CsaV3_4G008200 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAGTACAGCTGTTGCATTCAAGTTCTTTGGCTGGTATCTTACATATCCAATGCAAAGAACTCGACATATTCTCCTGCCCTGTACATCTTAAAACAACAATATCCGATTTAGATTATGAGTAACTGTTTCTGCCAGAATGCAATCACTTGACAGACGTTGCTGGATCTATTGCTTCTCATTCTCGTGGAATTTTTTTCCTTTAATCGTATATGGGTGTTGAACCTTTAGAAGATATGCTGTTTGCTGAATTTTTTTGAGTAGGCGAATTTATTGAATTTTAGGTGAGAAAACTGAAGTATCTTTATATCCATCGTTCAGATGGTAAGTGATTGGTGTTAAGATATCATAAAACCACTAGATTTCTTTTAGGAAGTAGAACTTTGTCTTTGTGGAGAGGGTGGTAGCATTAAGTGGACGCGATCCTCTGATATCCTTTTGTTATGAAAAGTGCTTCTGCTATTCACATTTATAAACTTTATGCACAATTTGAAGTCCTCAAAATCATTGATGGTGGTCAAAAAGTGATTTATTTTATTTCAGGACTTACAGTGAACATTGAAAGCTTGGATCGCTGATATTTTCGTTACAGGGTATATGATATTCCTAGCATTCCATGGACTTAGAGGGTGCTTCTGAGGGTTAATTATGAAATGCAATGCTTGCTGGAGGGAACTTGAAGGGCGAGCTGTCACCACAACTTGTGGTCACTTATTGTGTATCCTAAGCTTTTTTTCGTTTCACCATCGTTTAATTTGGTGAAATATTTGACCTACTATTATTAGTCAATGCAAATGGCTTGGTTGGATAAATTGTTCCTTAACGGTGTAAAGGCACAGAAGATGCAAGCAAGATCCTTAGCAACGATGGAGCATGCCCCATCTGTGATCAAGTTCTTTCTAAAAGGTGAAGGGTTTGTTATTATAACGCTTTCAAGTCTCAGCAATTGCTCAACTTACGTACTGTTTAGACAAGGTTTGCATTAGGCCCCAGACCCAGTGCACGTTTGATTTAAAAAAGGAAACGTAATTTTATTAATAGTATGTAAGCAATGTCTTATAGTACCCAACATCAGATCTATCATACCTATCATCTTCTTAGAAAATAGAGCGCCATTTAGACAAATTATTTTTCCATGGTTTACAGATTCAATAACAAAAATGATTTCATTCTCTTACATTCGGTTTCTGTTTAGCAGCCTCATGAAACCTGTGGACATCAATCCAAATGACGAATGGGCAAATGTAAGTATTTTCTTAAAAGGATTGCATTTAGCTTGGTAATATCTTTTAAAACTCTTCTAGCATTCTCGACTTTTTCAATGTCTGTTATTTTGATGCTGACATTCACTGCACAAAATATTGCAGATGGCCATGGCTGGCATATCACCCCAGATATGTATCTTTTGGAATGATCATCAATTATACAAAATTATGATAATTAATAATAAACCAGTCTCCAGAGTCTGGAAAACACTGCTTTGTCATTTTTTTAACAGTTGAGAAGGTAACTATAGTGGTGATGCATTCCCGTTGTACATAGGAACAATATGAAACATAAATTGTCTGTCACTTCTCCTTGACTGCTCCCAGTGATGAAAAGTGCATATAGAAGCGTAATGTTCTATAATGGACAAAAGGAATTGGAGATGCAGTACAAGATGAACAGACTCATGGCGCAATGCCGACAGAAATGCGAGGTAATGCAAGAAAAGTTTACTGAGAAACTAGAGCAGGTACATTCTGCATACCAAAAGATGGCCAAGAGATGCCAGATGATGGAACGAGAAATGGAGAATTTATCCAAAGACAAACAAGAGCTACAGGAGAAGTTTGCCGAAAAATCCAGGTCATCTCCTTTCATTTATTCTTCCAACTTTTTAACTGATTCAAGAGGCCATTTTCTGTTTTCAAGATCCTGATCCAGAAAATTCAATTGCATGTTAGGCAGAAGAGGAAACTAGATGAAATGTATGATCAATTGAGGAATGAGCATGAATCACTAAAACGTTCAGCGATCCAGCCCGTGACTAATTTTTATACAAGAAATGAGTCTGATTTGTTCTCAAACCCCGTTAATTTGATGGATAACAGAGAAGCTACGAGGAAAGGTAAACTTTTTCTCTTTCTAATTTTACACAATCGATATTTCTTTCATATCATGCTTTTCAGTTGTGACATAAATACTGTTTAATAATATCTCATGTTACTGTTCTAGTATTTTTCCGAAATAATATCTCATGTTACTGTTCTAGTATTTTTCCGAAACAAGTTGACTTATTTCTTGCAGACTGGATGGTTTCTGCTCCTGAAACTCCAGGACCAAGAGAAGAAATATGGCCGACAAGACAGAATAGTGGGAACTCTGGTCACTTCGACATCTCCGTTGGGTCACCGGCAAAACAAGCTGCTCCAATGGCAATGGAAGCTGGGAACAGAAGAGCTGGAGCTCACACTGCATTTGGAAGTGGAGCTGGAAATCCCTCCATGACTCTCCGAAACTTGATTCTGTCCCCAATCAAACGACCTCAGCTCTCTCGTCGTCCTCAAATGTTCACGTAAGTAATATTTGAAATCTCATAATTTTGAGGGATCTTACAGGATTTGGGTTAAATTATTCATTTAACTTTCTTGTTATTTTCATTTCCAATCAATAACCTCATTATATTAGTAAATTTTTTCTTTCTTTCTTTTTTCGATAAAACTTTTTCATCTTTTTTGAGTTGAAGAATAAGACAAGCCATCTAGGTTCAATCAACCACCCCCACACTTTGTCGAAAAAAAAAAATCTTTCTTCCCTTTTTCAGTTACCACACAAAAACAATGTTAAATACATTCATATCAAACCTTTTTCATTTCAAATTAAAATTAAAGAGAGTTCTAAACTTGTAGATTCACCCCTTTCTACTCTCTGTAGCTGATTTATAATACTGTCATTGTAGATTGTGAGATGGAAGTTAAGTAGTTGAAATTTGGTGGGCAAAAGCGCACAGATCAATTGGCTTCCTCGACGGTTCTCTCTTCTTTCGTTTGGCAGTTTTGAAGCTATTGAAGGATTACAGAAGAAAATAGGATGCACCTTTTATCCTCTCTTGCTGTTTTTAATCATTCGGTTCATGAACCAACGGAATATTACACTGATTAACTCCCAACACCTACACATTTTTTATTTCTTGCGTGAGCTTTGATCTTCACTACATGAAAGAAAAAAGAAAACCCCCCAACAGACACAAATGTAGAAATCATTATCAACTAATTCGATGCAACATTATGCAAACAGCGTTCTTCTGAAGAAGGGTTGCCC ATGAAATGCAATGCTTGCTGGAGGGAACTTGAAGGGCGAGCTGTCACCACAACTTGTGGTCACTTATTGTGCACAGAAGATGCAAGCAAGATCCTTAGCAACGATGGAGCATGCCCCATCTGTGATCAAGTTCTTTCTAAAAGCCTCATGAAACCTGTGGACATCAATCCAAATGACGAATGGGCAAATATGGCCATGGCTGGCATATCACCCCAGATATTGATGAAAAGTGCATATAGAAGCGTAATGTTCTATAATGGACAAAAGGAATTGGAGATGCAGTACAAGATGAACAGACTCATGGCGCAATGCCGACAGAAATGCGAGGTAATGCAAGAAAAGTTTACTGAGAAACTAGAGCAGGTACATTCTGCATACCAAAAGATGGCCAAGAGATGCCAGATGATGGAACGAGAAATGGAGAATTTATCCAAAGACAAACAAGAGCTACAGGAGAAGTTTGCCGAAAAATCCAGGCAGAAGAGGAAACTAGATGAAATGTATGATCAATTGAGGAATGAGCATGAATCACTAAAACGTTCAGCGATCCAGCCCGTGACTAATTTTTATACAAGAAATGAGTCTGATTTGTTCTCAAACCCCGTTAATTTGATGGATAACAGAGAAGCTACGAGGAAAGGACCAAGAGAAGAAATATGGCCGACAAGACAGAATAGTGGGAACTCTGGTCACTTCGACATCTCCGTTGGGTCACCGGCAAAACAAGCTGCTCCAATGGCAATGGAAGCTGGGAACAGAAGAGCTGGAGCTCACACTGCATTTGGAAGTGGAGCTGGAAATCCCTCCATGACTCTCCGAAACTTGATTCTGTCCCCAATCAAACGACCTCAGCTCTCTCGTCGTCCTCAAATGTTCACATTGTGA ATGAAATGCAATGCTTGCTGGAGGGAACTTGAAGGGCGAGCTGTCACCACAACTTGTGGTCACTTATTGTGCACAGAAGATGCAAGCAAGATCCTTAGCAACGATGGAGCATGCCCCATCTGTGATCAAGTTCTTTCTAAAAGCCTCATGAAACCTGTGGACATCAATCCAAATGACGAATGGGCAAATATGGCCATGGCTGGCATATCACCCCAGATATTGATGAAAAGTGCATATAGAAGCGTAATGTTCTATAATGGACAAAAGGAATTGGAGATGCAGTACAAGATGAACAGACTCATGGCGCAATGCCGACAGAAATGCGAGGTAATGCAAGAAAAGTTTACTGAGAAACTAGAGCAGGTACATTCTGCATACCAAAAGATGGCCAAGAGATGCCAGATGATGGAACGAGAAATGGAGAATTTATCCAAAGACAAACAAGAGCTACAGGAGAAGTTTGCCGAAAAATCCAGGCAGAAGAGGAAACTAGATGAAATGTATGATCAATTGAGGAATGAGCATGAATCACTAAAACGTTCAGCGATCCAGCCCGTGACTAATTTTTATACAAGAAATGAGTCTGATTTGTTCTCAAACCCCGTTAATTTGATGGATAACAGAGAAGCTACGAGGAAAGGACCAAGAGAAGAAATATGGCCGACAAGACAGAATAGTGGGAACTCTGGTCACTTCGACATCTCCGTTGGGTCACCGGCAAAACAAGCTGCTCCAATGGCAATGGAAGCTGGGAACAGAAGAGCTGGAGCTCACACTGCATTTGGAAGTGGAGCTGGAAATCCCTCCATGACTCTCCGAAACTTGATTCTGTCCCCAATCAAACGACCTCAGCTCTCTCGTCGTCCTCAAATGTTCACATTGTGA MKCNACWRELEGRAVTTTCGHLLCTEDASKILSNDGACPICDQVLSKSLMKPVDINPNDEWANMAMAGISPQILMKSAYRSVMFYNGQKELEMQYKMNRLMAQCRQKCEVMQEKFTEKLEQVHSAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKSRQKRKLDEMYDQLRNEHESLKRSAIQPVTNFYTRNESDLFSNPVNLMDNREATRKGPREEIWPTRQNSGNSGHFDISVGSPAKQAAPMAMEAGNRRAGAHTAFGSGAGNPSMTLRNLILSPIKRPQLSRRPQMFTL* Homology
BLAST of CsaV3_4G008200 vs. NCBI nr
Match: XP_011653300.1 (E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X3 [Cucumis sativus] >KGN53579.1 hypothetical protein Csa_014846 [Cucumis sativus]) HSP 1 Score: 579.7 bits (1493), Expect = 1.4e-161 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. NCBI nr
Match: XP_011653301.1 (E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4 [Cucumis sativus]) HSP 1 Score: 578.2 bits (1489), Expect = 4.1e-161 Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. NCBI nr
Match: XP_004137226.1 (E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Cucumis sativus] >XP_011653295.1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Cucumis sativus] >XP_011653296.1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Cucumis sativus] >XP_011653297.1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Cucumis sativus] >XP_011653298.1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Cucumis sativus]) HSP 1 Score: 571.6 bits (1472), Expect = 3.9e-159 Identity = 294/304 (96.71%), Postives = 294/304 (96.71%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. NCBI nr
Match: XP_031740265.1 (E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X2 [Cucumis sativus]) HSP 1 Score: 570.1 bits (1468), Expect = 1.1e-158 Identity = 293/303 (96.70%), Postives = 293/303 (96.70%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. NCBI nr
Match: XP_008451733.1 (PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X3 [Cucumis melo]) HSP 1 Score: 561.2 bits (1445), Expect = 5.2e-156 Identity = 289/304 (95.07%), Postives = 290/304 (95.39%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy Swiss-Prot
Match: F4HRI2 (E3 ubiquitin-protein ligase CCNB1IP1 homolog OS=Arabidopsis thaliana OX=3702 GN=HEI10 PE=2 SV=1) HSP 1 Score: 431.8 bits (1109), Expect = 6.3e-120 Identity = 230/309 (74.43%), Postives = 259/309 (83.82%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy Swiss-Prot
Match: I6PL68 (E3 ubiquitin-protein ligase CCNB1IP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=HEI10 PE=1 SV=2) HSP 1 Score: 397.1 bits (1019), Expect = 1.7e-109 Identity = 210/305 (68.85%), Postives = 242/305 (79.34%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy Swiss-Prot
Match: Q9NPC3 (E3 ubiquitin-protein ligase CCNB1IP1 OS=Homo sapiens OX=9606 GN=CCNB1IP1 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 5.3e-10 Identity = 49/177 (27.68%), Postives = 90/177 (50.85%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy Swiss-Prot
Match: D3Z3K2 (E3 ubiquitin-protein ligase CCNB1IP1 OS=Mus musculus OX=10090 GN=Ccnb1ip1 PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 3.4e-09 Identity = 46/174 (26.44%), Postives = 88/174 (50.57%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy TrEMBL
Match: A0A0A0KXL4 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G083540 PE=4 SV=1) HSP 1 Score: 579.7 bits (1493), Expect = 6.9e-162 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy TrEMBL
Match: A0A1S3BSZ6 (E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492939 PE=4 SV=1) HSP 1 Score: 561.2 bits (1445), Expect = 2.5e-156 Identity = 289/304 (95.07%), Postives = 290/304 (95.39%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy TrEMBL
Match: A0A1S3BTB4 (E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4 OS=Cucumis melo OX=3656 GN=LOC103492939 PE=4 SV=1) HSP 1 Score: 559.7 bits (1441), Expect = 7.3e-156 Identity = 288/303 (95.05%), Postives = 289/303 (95.38%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy TrEMBL
Match: A0A1S4DYU0 (E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492939 PE=4 SV=1) HSP 1 Score: 558.1 bits (1437), Expect = 2.1e-155 Identity = 289/312 (92.63%), Postives = 290/312 (92.95%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. ExPASy TrEMBL
Match: A0A6J1J3Z1 (E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111481027 PE=4 SV=1) HSP 1 Score: 552.0 bits (1421), Expect = 1.5e-153 Identity = 277/294 (94.22%), Postives = 286/294 (97.28%), Query Frame = 0
BLAST of CsaV3_4G008200 vs. TAIR 10
Match: AT1G53490.1 (RING/U-box superfamily protein ) HSP 1 Score: 431.8 bits (1109), Expect = 4.4e-121 Identity = 230/309 (74.43%), Postives = 259/309 (83.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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