CsaV3_4G007350 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G007350
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	gamma aminobutyrate transaminase 1, mitochondrial-like
Location	chr4: 5000343 .. 5000759 (+)
RNA-Seq Expression	CsaV3_4G007350
Synteny	CsaV3_4G007350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTGGATCTTGATTTACCAGGTCATACTTATGCTTATAGGTTGTTATCTGTTTTATATAAACAGGAGTTGGTAAATATTTTGGAGCTGAATGTCGAAAAAATGGTTTGATAATAAGAACTGGAGGGGATACTATAACGCTGTCTCCATCATTTATGATCTCTCCTCAAGAAGTTGATGGGGTATCTGAAAAAGACTAATAATAACATGATTGAGTAATGAGTATCAATTCTCTACATGTTTTCTAAGAATTTGATCCGCCGTTTCTTGATTCCAGTTAATGAGCAAATACGAAAAAGCACTGAAAGCCATTGAAGAGAGTGAAGGAATTGAAGGCTCAGAAAAAGAAGCGGCAAATAGTTACAATGAATGGCTTGAAGGAACAGAATCATGTCTACACTCAAGGAACGTATAA

mRNA sequence

ATGCGGTGGATCTTGATTTACCAGGTCATACTTATGCTTATAGGAGTTGGTAAATATTTTGGAGCTGAATGTCGAAAAAATGGTTTGATAATAAGAACTGGAGGGGATACTATAACGCTGTCTCCATCATTTATGATCTCTCCTCAAGAAGTTGATGGGTTAATGAGCAAATACGAAAAAGCACTGAAAGCCATTGAAGAGAGTGAAGGAATTGAAGGCTCAGAAAAAGAAGCGGCAAATAGTTACAATGAATGGCTTGAAGGAACAGAATCATGTCTACACTCAAGGAACGTATAA

Coding sequence (CDS)

ATGCGGTGGATCTTGATTTACCAGGTCATACTTATGCTTATAGGAGTTGGTAAATATTTTGGAGCTGAATGTCGAAAAAATGGTTTGATAATAAGAACTGGAGGGGATACTATAACGCTGTCTCCATCATTTATGATCTCTCCTCAAGAAGTTGATGGGTTAATGAGCAAATACGAAAAAGCACTGAAAGCCATTGAAGAGAGTGAAGGAATTGAAGGCTCAGAAAAAGAAGCGGCAAATAGTTACAATGAATGGCTTGAAGGAACAGAATCATGTCTACACTCAAGGAACGTATAA

Protein sequence

MRWILIYQVILMLIGVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEESEGIEGSEKEAANSYNEWLEGTESCLHSRNV*

Homology

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BLAST of CsaV3_4G007350 vs. NCBI nr
Match: KGN53492.1 (hypothetical protein Csa_015333 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MRWILIYQVILMLIGVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEK 60
          MRWILIYQVILMLIGVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEK
Sbjct: 1  MRWILIYQVILMLIGVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEK 60

Query: 61 ALKAIEESEGIEGSEKEAANSYNEWLEGTESCLHSRNV 99
          ALKAIEESEGIEGSEKEAANSYNEWLEGTESCLHSRNV
Sbjct: 61 ALKAIEESEGIEGSEKEAANSYNEWLEGTESCLHSRNV 98

[Close]

BLAST of CsaV3_4G007350 vs. NCBI nr
Match: KAA0044992.1 (gamma aminobutyrate transaminase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVGK FGAECR+NGLI RTGGDTITLSPSF ISPQEVDGL SKY KALKA EE
Sbjct: 227 GVGKCFGAECRENGLITRTGGDTITLSPSFTISPQEVDGLTSKYGKALKATEE 279

[Close]

BLAST of CsaV3_4G007350 vs. NCBI nr
Match: TYK16479.1 (gamma aminobutyrate transaminase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVGK FGAECR+NGLI RTGGDTITLSPSF ISPQEVDGL SKY KALKA EE
Sbjct: 195 GVGKCFGAECRENGLITRTGGDTITLSPSFTISPQEVDGLTSKYGKALKATEE 247

[Close]

BLAST of CsaV3_4G007350 vs. NCBI nr
Match: XP_022931321.1 (gamma aminobutyrate transaminase 1, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG YF AECRKNGLI+R GGDTIT++P F+ISPQEVD L+S Y KALKA EE
Sbjct: 435 GVGAYFVAECRKNGLIVRPGGDTITMAPPFIISPQEVDELISIYGKALKATEE 487

[Close]

BLAST of CsaV3_4G007350 vs. NCBI nr
Match: XP_023551969.1 (gamma aminobutyrate transaminase 1, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG YF AECRKNGLI+R GGDTIT++P F+ISPQEVD L+S Y KALKA EE
Sbjct: 435 GVGAYFVAECRKNGLIVRPGGDTITMAPPFIISPQEVDELISIYGKALKATEE 487

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy Swiss-Prot
Match: Q94CE5 (Gamma-aminobutyrate transaminase POP2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=POP2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-11
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG +FGAEC+K+G+++R  GD I +SP  +ISP+E+D L+S Y KALKA EE
Sbjct: 441 GVGAFFGAECQKHGMLVRVAGDGILMSPPLIISPEEIDELISIYGKALKATEE 493

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy Swiss-Prot
Match: Q84P54 (Gamma aminobutyrate transaminase 1, mitochondrial OS=Solanum lycopersicum OX=4081 GN=GABA-TP1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-11
Identity = 28/53 (52.83%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG YFGA+C+KNG+++R  GDTI +SP F+++P+E+D L+  Y KAL+  E+
Sbjct: 454 GVGAYFGAQCQKNGMLVRVAGDTIMMSPPFVVTPEELDELIRIYGKALRETEK 506

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy Swiss-Prot
Match: B8BBZ7 (Probable gamma-aminobutyrate transaminase 3, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28220 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG  FGAEC K G++IR  GD I LSP  +++P EV+ ++SKY  ALKA EE
Sbjct: 448 GVGSLFGAECEKRGMLIRVAGDNIMLSPPLIMTPDEVEEIISKYGDALKATEE 500

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy Swiss-Prot
Match: Q6ZCF0 (Probable gamma-aminobutyrate transaminase 3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0205900 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.8e-10
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG  FGAEC K G++IR  GD I LSP  +++P EV+ ++ KY  ALKA EE
Sbjct: 448 GVGSLFGAECEKRGMLIRVAGDNIMLSPPLIMTPDEVEEIICKYGDALKATEE 500

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy Swiss-Prot
Match: Q01K12 (Probable gamma-aminobutyrate transaminase 2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=OsI_17384 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-09
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GV + FGAEC+K G++++  GD I +SP  ++S +EVDGL+S Y +ALKA EE
Sbjct: 435 GVAQIFGAECKKRGMLVKVVGDEIAMSPPLIMSQREVDGLVSIYGEALKATEE 487

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy TrEMBL
Match: A0A0A0KYR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056800 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.5e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MRWILIYQVILMLIGVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEK 60
          MRWILIYQVILMLIGVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEK
Sbjct: 1  MRWILIYQVILMLIGVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEK 60

Query: 61 ALKAIEESEGIEGSEKEAANSYNEWLEGTESCLHSRNV 99
          ALKAIEESEGIEGSEKEAANSYNEWLEGTESCLHSRNV
Sbjct: 61 ALKAIEESEGIEGSEKEAANSYNEWLEGTESCLHSRNV 98

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy TrEMBL
Match: A0A5A7TNQ3 (Gamma aminobutyrate transaminase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003020 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVGK FGAECR+NGLI RTGGDTITLSPSF ISPQEVDGL SKY KALKA EE
Sbjct: 227 GVGKCFGAECRENGLITRTGGDTITLSPSFTISPQEVDGLTSKYGKALKATEE 279

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy TrEMBL
Match: A0A5D3D1Y0 (Gamma aminobutyrate transaminase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002820 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVGK FGAECR+NGLI RTGGDTITLSPSF ISPQEVDGL SKY KALKA EE
Sbjct: 195 GVGKCFGAECRENGLITRTGGDTITLSPSFTISPQEVDGLTSKYGKALKATEE 247

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy TrEMBL
Match: A0A6J1ETC9 (gamma aminobutyrate transaminase 1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111437542 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG YF AECRKNGLI+R GGDTIT++P F+ISPQEVD L+S Y KALKA EE
Sbjct: 435 GVGAYFVAECRKNGLIVRPGGDTITMAPPFIISPQEVDELISIYGKALKATEE 487

[Close]

BLAST of CsaV3_4G007350 vs. ExPASy TrEMBL
Match: A0A6J1ETB2 (gamma aminobutyrate transaminase 1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111437544 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-12
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG YFGAECRKNGLI+R G +TIT++P F+ISPQEVD ++S Y KALKA EE
Sbjct: 408 GVGAYFGAECRKNGLILRAGENTITMAPPFIISPQEVDEIISIYGKALKATEE 460

[Close]

BLAST of CsaV3_4G007350 vs. TAIR 10
Match: AT3G22200.1 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 8.7e-13
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG +FGAEC+K+G+++R  GD I +SP  +ISP+E+D L+S Y KALKA EE
Sbjct: 441 GVGAFFGAECQKHGMLVRVAGDGILMSPPLIISPEEIDELISIYGKALKATEE 493

[Close]

BLAST of CsaV3_4G007350 vs. TAIR 10
Match: AT3G22200.2 (Pyridoxal phosphate (PLP)-dependent transferases superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 8.7e-13
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 15  GVGKYFGAECRKNGLIIRTGGDTITLSPSFMISPQEVDGLMSKYEKALKAIEE 68
           GVG +FGAEC+K+G+++R  GD I +SP  +ISP+E+D L+S Y KALKA EE
Sbjct: 450 GVGAFFGAECQKHGMLVRVAGDGILMSPPLIISPEEIDELISIYGKALKATEE 502

The following BLAST results are available for this feature:

BLAST of CsaV3_4G007350 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53492.1	1.1e-46	100.00	hypothetical protein Csa_015333 [Cucumis sativus]	[more]
KAA0044992.1	1.3e-15	86.79	gamma aminobutyrate transaminase 3 [Cucumis melo var. makuwa]	[more]
TYK16479.1	1.3e-15	86.79	gamma aminobutyrate transaminase 3 [Cucumis melo var. makuwa]	[more]
XP_022931321.1	1.4e-12	75.47	gamma aminobutyrate transaminase 1, mitochondrial-like [Cucurbita moschata]	[more]
XP_023551969.1	1.4e-12	75.47	gamma aminobutyrate transaminase 1, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]

BLAST of CsaV3_4G007350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CE5	1.2e-11	58.49	Gamma-aminobutyrate transaminase POP2, mitochondrial OS=Arabidopsis thaliana OX=...	[more]
Q84P54	3.6e-11	52.83	Gamma aminobutyrate transaminase 1, mitochondrial OS=Solanum lycopersicum OX=408...	[more]
B8BBZ7	2.3e-10	56.60	Probable gamma-aminobutyrate transaminase 3, mitochondrial OS=Oryza sativa subsp...	[more]
Q6ZCF0	8.8e-10	54.72	Probable gamma-aminobutyrate transaminase 3, mitochondrial OS=Oryza sativa subsp...	[more]
Q01K12	2.0e-09	52.83	Probable gamma-aminobutyrate transaminase 2, mitochondrial OS=Oryza sativa subsp...	[more]

BLAST of CsaV3_4G007350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYR6	5.5e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056800 PE=4 SV=1	[more]
A0A5A7TNQ3	6.5e-16	86.79	Gamma aminobutyrate transaminase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3D1Y0	6.5e-16	86.79	Gamma aminobutyrate transaminase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1ETC9	6.8e-13	75.47	gamma aminobutyrate transaminase 1, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1ETB2	3.4e-12	71.70	gamma aminobutyrate transaminase 1, mitochondrial-like OS=Cucurbita moschata OX=...	[more]

BLAST of CsaV3_4G007350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22200.1	8.7e-13	58.49	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	[more]
AT3G22200.2	8.7e-13	58.49	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015422	Pyridoxal phosphate-dependent transferase, small domain	GENE3D	3.90.1150.10	Aspartate Aminotransferase, domain 1	coord: 11..79 e-value: 3.2E-11 score: 45.1
None	No IPR available	PANTHER	PTHR42684:SF13	BNAA01G24820D PROTEIN	coord: 12..68
None	No IPR available	PANTHER	PTHR42684	ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE	coord: 12..68
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 17..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G007350.1	CsaV3_4G007350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity