CsaV3_4G007340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G007340
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTransmembrane protein
Locationchr4: 4998809 .. 5001483 (-)
RNA-Seq ExpressionCsaV3_4G007340
SyntenyCsaV3_4G007340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCTAGTAAATGTAAAACTAATTTTATATAACATGAAACAAATTTAAACATTTTTTTGTTAGTAGAATCTAATTTTAGAATCAAATATAAGTGTGAAAACATAAAATAGTTTTTCATATTGAATCTCTTATTTCAAATAAACAAAAAGAAGACGTTATCTTGATTACGTCATCTTATCCGTCTTCACAAAAGCATAGCTTCAAGTCACCGAAGCATCCACTCTCCAGTACAGATTTAGTTTAGAAGGAAGAAGGAAGGGGAAAATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGGTACCTTTCTGTCTTCCTTCTTTTTTTCCAATTTTTACACATTTTTTTACTTCAAATTATAAACCAATTAATGGGTTCTTAAATTGGGGGATCGCTAAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGATCATTTTGTAAGATAATTTGCCTCTTTTACAAGTCTTTTCATTTCTTTTTTTGTAATGTCTGTTAAAGATTCTAATAGGAGCTTTTATTTCAAGAAGGCTTTGAAATCTATATCAAACATCATATTCACAACATCCAAGATGCAGAAGGATTTATACGTTCCTTGAGTGTAGACATGATTCTGTTCCTTCAAGCCATTCATTGTAACTATTTGCCGCTTCTTTTTCTGAGCCTTCAATTCCTTCACTCTCTTCAATGGCTTTCAGTGCTTTTTCGTATTTGCTCATTAACTGGAATCAAGAAACGGCGGATCAAATTCTTAGAAAACATGTAGAGAATTGATACTCATTACTCAATCATGTTATTATTAGTCTTTTTCAGATACCCCATCAACTTCTTGAGGAGAGATCATAAATGATGGAGACAGCGTTATAGTATCCCCTCCAGTTCTTATTATCAAACCATTTTTTCGACATTCAGCTCCAAAATATTTACCAACTCCTGTTTATATAAAACAGATAACAACCTATAAGCATAAGTATGACCTGGTAAATCAAGATCCACCGCATTTCTAGAGATTTGTTATCTTGAGGTTAAGCTGGTTCAGAAATATCAAGATTTATAAACTACTATGCTATTTTTTTAGGCTATAATTATTTGATTCAAATCATATACTCTTTCTTTTCACGACATTAGGCTTGGCGATGAAACCAAGGTGTTTTCTTGATATAAGCGATTAAGATGTATATATACCGATGAGAATTACATAAAGATAAAACATATCCCATTCTGGAGGGGAGGGAATGGATCATTTGGAGTCATTTCCCATTTGTGATGATCACTCAAACATCAATTCCATTCCAACTCTCTCTTTATACTTTCAAGTCCCGAGCTTAAAAACGGTTTTGTTTCTATTCCTTGTTCTGACGAGTGTACATTAGAATAAAGCTGTGTTAGTCTTGGGGGCAACCGATAACAGGATTAGCACCACAGTTGGCCATATTTGCTTTCAGGGTAGTAGTTCGTCATGGCACGACACAACAATTTAGTATTTATTCGACATTCTCACATATTTTTCAACACATTTTAAACATATTGCTTCTGTATGTGAGTTTGTATCATAATTCATAACTACTACATTTATTCTTTTTTTACTTCAGATCGTGTTTACATCCTTAAACAAGGACGCCGACTGATTCAAATGGAAAAGTAGGTCCAGTCCTCCTTGATGGATTATAGCAGTTTTATTGTACCAACAAATCATTGGATCTTTGAAATGTTTGTCCACTTTTAAGGTTTCTCTGTCATTCTGAACAATGAAAGTAAAATTCGAAAAGAACAGGGGTATGAACGTACTTGTAGATCTTGAGTGTTTCAAGTGAGACCGGATGTCCAGAATAAGTAAATCCATGAGAAAAGGAACCTGGAAGTAATATTGTTGGATAAAGAAAATAGGCTATCAGCTACTGGAGTTGGAGATTTTATATTAACAGTAATTGACTAGTTTATTGTATAAGCAGTATACCTAGCTCGTTGCTATGGGAGTAATACCACATCAAAGATTTCAGGGTTAATGATCAGGAAGGTAAGCCGATGATAGTGTCTACAGTGTGCAGTAGACTATTAGGCTTGATAGAAACAATGAAAAGCCTAAACTAAGCAAGATATTTGTTTAAGTTAACTTCACCTTTGCAAGGGAAACAAGGCCTGTTTTAATATTGTATTTATCGCATCCATACATTGTCACTAGTCTTCCAAAGCCACATATAAGCTATAGATCAGAAAGAAATATTGAAGGCAAAACCAGGTGATTTATACTGATCAAACCATTCTTGTAAACAAAGTAAAATGATGAAGACAAAAAATTTCATTAGCAATGAGCCCCATCAGCAATAAAAAGTTTATCATACTTCCTTAGCACAGCTTGGACCTGCAACATAAGAAAAATTATTATTGAAGTGACTATAAGGGTTAGTGATTCCATTTAGCCCGCCGGGGCCAATCCTCCAAGTACTCGCCCGCGTTGTTGAGTTGACAATGTAAAGTAAATTGAGATTGTGTTTTAAAGGAAAAAAATTTAATTAAGTAACTCGACTAATCAAC

mRNA sequence

ATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Coding sequence (CDS)

ATGGATGGATTGCAGGAAATGGGGATTCCAATGCTTGGGATTGTTGCTGCTGCCGCCATTACCTTCTACGCTGTAAGCTTTTCAGAGCTTCGAGAGAAATCATTCAAAGATTTGGATGAATTGGAGGATCAGAAAGGAGGGTTTCAGATGACTTCAAGTTCTAGAGAAAGGCGAGCAAGAAGGAAGGCTGAAAAGGAAGCTAAAAGATGA

Protein sequence

MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRARRKAEKEAKR*
Homology
[Close]
BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_004147735.1 (uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 uncharacterized protein LOC101211279 [Cucumis sativus] >KGN53493.1 hypothetical protein Csa_014484 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_008451897.1 (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451899.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451900.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_016901164.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >KAA0044991.1 uncharacterized protein E6C27_scaffold74G003010 [Cucumis melo var. makuwa] >TYK16480.1 uncharacterized protein E5676_scaffold21G002830 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 7.8e-26
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_038900556.1 (uncharacterized protein LOC120087738 [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSF+DLDE EDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFRDLDESEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_022136426.1 (uncharacterized protein LOC111008135 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. NCBI nr
Match: XP_023545078.1 (uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo] >KAG6600446.1 hypothetical protein SDJN03_05679, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 5.8e-21
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. ExPASy TrEMBL
Match: A0A0A0KVD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. ExPASy TrEMBL
Match: A0A1S3BRZ5 (uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. ExPASy TrEMBL
Match: A0A5D3CYP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002830 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQEMGIP+LGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. ExPASy TrEMBL
Match: A0A6J1C3G9 (uncharacterized protein LOC111008135 OS=Momordica charantia OX=3673 GN=LOC111008135 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.1e-23
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. ExPASy TrEMBL
Match: A0A6J1J6A4 (uncharacterized protein LOC111482149 OS=Cucurbita maxima OX=3661 GN=LOC111482149 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.1e-21
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          MDGLQ+ G+P++GIVAAAAITFYAVSFSE+REKSF+DLDE ED+  GF+MT+SSRERRAR
Sbjct: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]
BLAST of CsaV3_4G007340 vs. TAIR 10
Match: AT3G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 35/66 (53.03%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60
          M+G+  + +P+LGIVA + +TFYAVSF+E+REKSFKD+ + E++  GF+ + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENEV-GFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

The following BLAST results are available for this feature:
BLAST of CsaV3_4G007340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147735.12.7e-26100.00uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 uncharact... [more]
XP_008451897.17.8e-2698.55PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 P... [more]
XP_038900556.13.0e-2597.10uncharacterized protein LOC120087738 [Benincasa hispida][more]
XP_022136426.11.1e-2288.41uncharacterized protein LOC111008135 [Momordica charantia][more]
XP_023545078.15.8e-2181.16uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo] >KAG6600446.1 ... [more]
BLAST of CsaV3_4G007340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVD41.3e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1[more]
A0A1S3BRZ53.8e-2698.55uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=... [more]
A0A5D3CYP33.8e-2698.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1C3G95.1e-2388.41uncharacterized protein LOC111008135 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1J6A48.1e-2181.16uncharacterized protein LOC111482149 OS=Cucurbita maxima OX=3661 GN=LOC111482149... [more]
BLAST of CsaV3_4G007340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G22210.11.4e-1253.03unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..69
NoneNo IPR availablePANTHERPTHR37225OSJNBA0011F23.3 PROTEINcoord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G007340.1CsaV3_4G007340.1mRNA