CsaV3_4G007130 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G007130
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	embryo defective 3006
Location	chr4: 4829185 .. 4834469 (+)
RNA-Seq Expression	CsaV3_4G007130
Synteny	CsaV3_4G007130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGTTGTAACATCAACCCTTAACTTCTGAAATATTACATAATTGCCACCAGGCTTAAGTTTCAACTCTCCAGAAATCTCCCGCTAACTACTTCAGAATTTTCGGACTTCAATTTCTTTGTCAGCTTGCCGTTCCTCTATTCGTCGCCGCCAATCGACGGCACTGACGGGGCTCAACTCACCAACTCGTTTCACTTACAGCCGCTTTCGAATTTCTTCTTCCCGTCGTTGTTCCGCCATTTTTATCAAGTTTAATGTCAGCGCAGATTTTAGCAAGATAGGGTTGGGAATCGTAGTGTACAAAAATTTTGAATATGGGGGAGAAGCACGAGCTTGATGCTCCGGTGAGCTCCAGACAGATCGATCTGAAGAAGTCCTTCAAGCTTGCTGTTCGTCCTCTCCTTACTTCCTGTTCCAGGGAGGTAAGCACGAAATGAGAATCTGCTATGTGTATAATGTCTTGGAAATGGTGTGGAATTGGTACTTAGAAATTCGAATCTGCATTCTGAGTGGGAATTTGGTCATGATGTATACTTTTTTAGGTTACTTCTATAAGATGCTAAAATTTGTGTAGTGTTTTTTTGTTTCAAAATTTAGGAGTTTCGGGAATGCTTTTCGAGATTTACGACTGCAGAGCAAGATTATCTTCATCGTCTTTTCATTCAGGTACTACTGTTCTGCTTTTGTATGTTTTCTCTCATTCTCACTGGGAGGCTGAGGTGAAAACGAATTAGCATCATATGGACAAATTGGAGATATTGAGTTTCTTTCAGTACAATTCTAGGACGTTTTCTTGTCTCCATCCTTCTTAAATTTGTTGCATGCAGATCCTATACTGTCTTCAATGGTTAGCAGCATGTAATTTGCTGCACATCATTTTTGAATTTGCATTGTTCTTATTGCTTCTAGTCTCCTTGATGATGCAATAATGAATTTTGGTGTTCATCAAACTTGCAGGTTATAACTTCTCTTCATGGAAACATAGAGGTATATTACTCAAGGTTTTTCTTCATAGTCCATCCTGATAATTGCATTTTGGGATTTTCTCAATAGTGACGTGTGATTATGTTTTTTTTAAAAATCCTTTTTCTCAACGAGGCACGTAATGAGATAATGCTTATTTTATGCTTAGGCTTCCTGATCTTCTACTTGGATTACTTTTCTTATTACCCAATCATCATGTCACAGAATAATCATCATTAAGCCCATTAGATTGTCTTCTCCAATTATATATTAACTTTTAGCTTGGAAGTTTTCATCTAGTGTTTTCACAATGTAAGGTCCAGTTTAAGTTGACAAGCTCGCTGCTTGTCTGATGACGGGGGCACATTACTGGCCATATTGGACTATAACTAGACACATAGTTTAGAATAGAAATAATATATATTGTAAATAGAAGATTCCTGTACATGCGAACAATAAATTTTATTGCTTCTGTTCCTAAGAGTTGAGAAATGGGAAAAGAGAAAATAATATGAAAAAATTGTTTTTGATTTTCTTTCGGTATAGTGCACTTTGCCTTGTCAGTAGGGGCAAAATCTAAAAAGCAATCCACCAGGTGCTTGTCATAGACTACTAGTGCAGTCTCTGTCGCCCATTGCTGCAGTGGGCAATCTCTTAAAGCTTGTCTCAAAATAAATTCACAATAAAATTCTCTATTTTTACGTTGTGTGGTCATCAATAGCATTTGATTTTAATTCTCTTTTTACGTATAGCAATTTCTGGTCAATAACAGTACCTTTATCTGAAATGTACAGGACGAGTTTGAGTCATTATGTGTTGAAACACAGGTAATGCTCTTGTTTCTGTCAACTTATTATGCCCAGGTTTGTCTTCTTACTTCTTTTTTTAGTATGTGCGTACACATTCGTATTTTAAGGTATGGGCATGACCCCTTGGATAAGTTCAATATGAGTACAGGGGACCTTCATTGTAACTATTGATATAGCAGTTTTGAAAAACTTAACTTAGTTTGGATGTGTCGGTTGTCAGATGTCTGAGTTCAAAGGGGTGATGGCAGGCTTCAATTAAAGCAGATAGAAAAACATGAGTGATCAGTAAGAAATAGTGAAAATTGGTGAATTGGCAGCATGATAGGAACTGCGGCATTCTATAATGTTTCATGCTATGCTATGCAATGATTATCTACATTCTAAACTTCCGACTTTGTGTTACACGTACTTTGTAGTAGATAATTTTAATATGTTGAGATTTGTTTATTTGAAAAGCCCAACAAGTGGAAATTGATTTTAATTGGGGAGGAAACGACAATGCAGCAGCTTGAACACATGACCACCTGCTCTGATACCATATTGAAAGGAGAGACAACGAGCACACACCAATTTACGTGGAAACCCGAGTACCGGGAGAAAAACCACGATTGTTTGTTGTTATTATTTTCTAATGAATAAAACAATAGGTACAAGGGAGAATAAATAGAGTAATAAAACAATAGGTACAAGGGAGAATAAATAGAGTAATAAAACAATAGGTACAAGGGAGAATAAATAGAGTATACAATGGAATAAAAAAGGAAAAGATTTAGGAAAATAAGGAAAACATTCCCATAATCTTTCCATAATTATTCTAGGATTCTTAACAAGGAAAATATCTAGAAAAAGGAAAGAATTCCAACAGTTTGAAGTGGTGATGTATTGCTAGCCATTTGTGTCTATATGCAGGTAACCTTCCCACTACCATTGTGTCACTATTTTCCTTGCATTCTAACAGTTTTGCTTTATCCAGGTGGGACTTGTATTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCAAAGAAGTAGGTATCTTCTGCTGCAGGGTTATTTTCTTGATCAAATTTGGTGTTGTAATTAGATACAGGTTCAAAAGACACTTCTAATCCTTTAACTTATATGGAAGCAACAATTTTGTCCCTGAATTTTACTTAGTAACAATCTGGCCTGCACTTTCAATTTTGAAACAATTTAGTTCTCTAACTTTGATATGTCACAATTTAGTCTTTGCACTTCAAAATTTATACAATAACAAATCTCATCAAATTTGAGTCCCAATTTTTTCTTATATAAGGCTTATTCTTGGCAGGTTATGAATATACTTGGTTCCTAATCAGTTAATATATCTGCATATGAAAAAATGTGATTAAGTCTCAGTAATTTTACAAATGGGACCAAAATATGATAAATTTTAAATACATAGACTAAATTGGTACAAATTTTAAATTACGGGCCCATGTAGTGAAAAACTAAAGTTCAGCAAAGTTAAGGGACAGTCTTTTTGAATCCTAAATTTATAGTATTGATGAAGAATCTAAACATCGTTTAATGGGATGGGAAGGGGCTTACACAGCAGGCTTCCGTAGGTTTTACAGATTGAATTTCTCTGGTGGAGTTAACAAATGACAGCCTCTAATGCAGGACCAATATAGTGGAAATATATAATTTTCTGTCCATGACAAAGAAGGAGGAGATCCAACACTTGAAGGACATGCTAAAAACGGTGAGCAACACTTGTAATTGTAACGCTTCTAAATAAAACCAACTTAACTGAATTTTTCTTCATTGATAAATCTACCTAATGGTATTGTTTCCCTTTCCACGTCAAAACAATAGTTTTATGTTCAATGGCCTATTATTTTCTATGATATGAATTTGATACGAACCAGTAGGCATTTATGTTGTTTCTGTCACTAAGCATGTATCCTAACTATTAGGTAAAATGACTTAATAATGCATTTGCTCTAGTGCACATGTAGGCTCAGGCTTTGTTAAAGCATAATGCGTGAACTGCAATATATTTGACCAAAGTGAACTTAGTTTAACGATAATTGGCATGACATTCCTCTCTAAAGGTTGAAGGTTCGATCTCCCATTCTCACAATTGTTGTGTTAAAACAAAATTGTAATATATTTGAACACTCTTTCTTTTAGCTTGTATTTTTTTACATAAATTGTAATATATGTGCTGCCTTTTTCTGTATGGCCTGAGCCAATGGTTTATGTGTGGATTTACAAAGATTTATTAATTAACTCATCCACTAAAGTTCTCTTTTTACGTAATTATTTCTTAACAAATAAAGTTGGGAAATTTTCTTATGATTGCAATTTTCCGTAGGCTGAGGAACAGAACTGGGTTATTCAAGGCCGTATTGATGATTTAAGGAAAGGAGTGCAAGATGCCTCTGGCATGGCAGATGCTGTTAAAAAGGTGCCTTTTGTATTTGGGGATCTTTTCCCACCTCTTTCAAATGGATAAATAATTTGAAAATGGTTGATAAAGTAAAACATGGCTGACTAAAGCGAACTTATATGGTTGGTTAGATTATTTTGATCCGTCTAAATAAAATGTGTTGTACAATTACAATCTGCTTTGGGAATTGCTTTTATTATGAATTTTAAAGAGTAATTAAGTAAAAATCTTAACTGCTTTGAATGTTTGATAAGATTTATTGTGAGTGAATTCACACATTCATTCTCACAGTTAACAAAATTTATTTCCTACACTCGCTTCTAAAAGTAAATTTTTGCGTAGAATCAACAAGTATTTCCCAACAATTTTTAGATTCTCTACCAAACATACTCTAAGGAAATAAAACTCAAAGGCCTAGTTTCCAACCTTAACAGCTAACTGACTTGTAAACGCTTGCAGCTAAGAAACTAATGCAGATCTTATGGAACTGATGGTGTTAATGAGACCTTCGATATACTTAACTGATGCTGTTAAATAGCAAGGTCAGTATGTAATTTAGTAGATTATACTTGGGTAGTTATGTGTGTCAATTTCCTCAGCTTAGCTCAAGCTTTATATTTACTTCTTATTTCATGTTTGCAATTATACATGTTTTCTTCTGACTAATGCATACAATCTATCTTGTTGTATCAAAGAATTGTTCAATGCCCCATCAAGAATTAGCTATGTCGTTGGAACTCTATATTGCCCTTGTTTCTTTCTCCACTCTCTCTAGGGACATTTTTTGTAGGCTTTATCATCCTCTTTGCAATGAAGATTGTAATCACAATGCAGTGGCATCTATCAAGCACAAACACTCTATTTTAGGTAGAGTGCCTGACACGTAAGTGTGCATGTCCTATTTTTATTTAAGATAATTGCAATGAGTATCATTTTTAATAATTAAGTGCATACGAACATTTTAAAAAAATTGCAACTTTAGTAATGGACTCAATCGTGGATAGACTTTGAAAGTGCATCTAGTTTTGGGTTTGATTGTAAACTTGCAACTCTGGTACAAATCCATTTTTTAAACCAAGGA

mRNA sequence

ATGGGGGAGAAGCACGAGCTTGATGCTCCGGTGAGCTCCAGACAGATCGATCTGAAGAAGTCCTTCAAGCTTGCTGTTCGTCCTCTCCTTACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCTTTTCGAGATTTACGACTGCAGAGCAAGATTATCTTCATCGTCTTTTCATTCAGGTTATAACTTCTCTTCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTGTTGAAACACAGGTGGGACTTGTATTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCAAAGAAGACCAATATAGTGGAAATATATAATTTTCTGTCCATGACAAAGAAGGAGGAGATCCAACACTTGAAGGACATGCTAAAAACGGCTGAGGAACAGAACTGGGTTATTCAAGGCCGTATTGATGATTTAAGGAAAGGAGTGCAAGATGCCTCTGGCATGGCAGATGCTGTTAAAAAGCTAAGAAACTAA

Coding sequence (CDS)

ATGGGGGAGAAGCACGAGCTTGATGCTCCGGTGAGCTCCAGACAGATCGATCTGAAGAAGTCCTTCAAGCTTGCTGTTCGTCCTCTCCTTACTTCCTGTTCCAGGGAGGAGTTTCGGGAATGCTTTTCGAGATTTACGACTGCAGAGCAAGATTATCTTCATCGTCTTTTCATTCAGGTTATAACTTCTCTTCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTGTTGAAACACAGGTGGGACTTGTATTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCAAAGAAGACCAATATAGTGGAAATATATAATTTTCTGTCCATGACAAAGAAGGAGGAGATCCAACACTTGAAGGACATGCTAAAAACGGCTGAGGAACAGAACTGGGTTATTCAAGGCCGTATTGATGATTTAAGGAAAGGAGTGCAAGATGCCTCTGGCATGGCAGATGCTGTTAAAAAGCTAAGAAACTAA

Protein sequence

MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKEEIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN*

Homology

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BLAST of CsaV3_4G007130 vs. NCBI nr
Match: XP_011653244.1 (uncharacterized protein LOC101212745 [Cucumis sativus] >KGN53468.1 hypothetical protein Csa_015125 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 1.2e-85
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 165

[Close]

BLAST of CsaV3_4G007130 vs. NCBI nr
Match: XP_008451872.1 (PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo] >KAA0040183.1 uncharacterized protein E6C27_scaffold118G00190 [Cucumis melo var. makuwa] >TYK16453.1 uncharacterized protein E5676_scaffold21G002510 [Cucumis melo var. makuwa])

HSP 1 Score: 297.4 bits (760), Expect = 7.9e-77
Identity = 153/165 (92.73%), Postives = 157/165 (95.15%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           MG+KHE+D PV+SRQIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQDYLHRLFIQV
Sbjct: 1   MGKKHEIDTPVTSRQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPLYSKKTNIVEI NFLSM K E
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIVEISNFLSMKKME 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQN VIQGRID LRKGVQDASGMADAVKKLR+
Sbjct: 121 EIQHLKDMLKTAEEQNRVIQGRIDVLRKGVQDASGMADAVKKLRS 165

[Close]

BLAST of CsaV3_4G007130 vs. NCBI nr
Match: XP_022931290.1 (uncharacterized protein LOC111437518 isoform X1 [Cucurbita moschata] >XP_023552810.1 uncharacterized protein LOC111810334 isoform X1 [Cucurbita pepo subsp. pepo] >KAG6577107.1 hypothetical protein SDJN03_24681, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 145/165 (87.88%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQ+YLHRLFIQV
Sbjct: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPLYSKKTNI+EI N+LSMTKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKN 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+KLRN
Sbjct: 121 EIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKLRN 165

[Close]

BLAST of CsaV3_4G007130 vs. NCBI nr
Match: XP_038876216.1 (uncharacterized protein LOC120068468 [Benincasa hispida])

HSP 1 Score: 278.5 bits (711), Expect = 3.8e-71
Identity = 144/164 (87.80%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           M +K E+D PVSS QIDLKKSFKLAVR LLTSCSREEFRECFS+FT AEQ+YLHRLFIQV
Sbjct: 1   MEKKREIDTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSKFTMAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQ+LDPLYSKKTNI+EI NFLS+TKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQELDPLYSKKTNIMEIANFLSITKKN 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLR 165
           EIQHLKDMLKTAEEQN +IQGRID LRKGVQDAS MADAVKKLR
Sbjct: 121 EIQHLKDMLKTAEEQNRLIQGRIDVLRKGVQDASCMADAVKKLR 164

[Close]

BLAST of CsaV3_4G007130 vs. NCBI nr
Match: XP_022985332.1 (uncharacterized protein LOC111483373 isoform X1 [Cucurbita maxima])

HSP 1 Score: 278.5 bits (711), Expect = 3.8e-71
Identity = 143/165 (86.67%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSR EFRECFSRFTTAEQ+YLHRLFIQV
Sbjct: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVET+VGLV DNVEQLLEEQDLDPLYSKKTNI+EI N+LSMTKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKN 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+KLRN
Sbjct: 121 EIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKLRN 165

[Close]

BLAST of CsaV3_4G007130 vs. ExPASy TrEMBL
Match: A0A0A0KV94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056590 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 5.9e-86
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV
Sbjct: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN
Sbjct: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 165

[Close]

BLAST of CsaV3_4G007130 vs. ExPASy TrEMBL
Match: A0A5A7TAS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002510 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 153/165 (92.73%), Postives = 157/165 (95.15%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           MG+KHE+D PV+SRQIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQDYLHRLFIQV
Sbjct: 1   MGKKHEIDTPVTSRQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPLYSKKTNIVEI NFLSM K E
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIVEISNFLSMKKME 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQN VIQGRID LRKGVQDASGMADAVKKLR+
Sbjct: 121 EIQHLKDMLKTAEEQNRVIQGRIDVLRKGVQDASGMADAVKKLRS 165

[Close]

BLAST of CsaV3_4G007130 vs. ExPASy TrEMBL
Match: A0A1S3BTB0 (uncharacterized protein LOC103493030 OS=Cucumis melo OX=3656 GN=LOC103493030 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 153/165 (92.73%), Postives = 157/165 (95.15%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           MG+KHE+D PV+SRQIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQDYLHRLFIQV
Sbjct: 1   MGKKHEIDTPVTSRQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPLYSKKTNIVEI NFLSM K E
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIVEISNFLSMKKME 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQN VIQGRID LRKGVQDASGMADAVKKLR+
Sbjct: 121 EIQHLKDMLKTAEEQNRVIQGRIDVLRKGVQDASGMADAVKKLRS 165

[Close]

BLAST of CsaV3_4G007130 vs. ExPASy TrEMBL
Match: A0A6J1EZ15 (uncharacterized protein LOC111437518 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437518 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.7e-73
Identity = 145/165 (87.88%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSREEFRECFSRFTTAEQ+YLHRLFIQV
Sbjct: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVETQVGLV DNVEQLLEEQDLDPLYSKKTNI+EI N+LSMTKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKN 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+KLRN
Sbjct: 121 EIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKLRN 165

[Close]

BLAST of CsaV3_4G007130 vs. ExPASy TrEMBL
Match: A0A6J1J4K9 (uncharacterized protein LOC111483373 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483373 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.8e-71
Identity = 143/165 (86.67%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MGEKHELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQV 60
           M +KHE+  PVSS QIDLKKSFKLAVR LLTSCSR EFRECFSRFTTAEQ+YLHRLFIQV
Sbjct: 1   MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSRGEFRECFSRFTTAEQEYLHRLFIQV 60

Query: 61  ITSLHGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKE 120
           ITSLHGNIEDEFESLCVET+VGLV DNVEQLLEEQDLDPLYSKKTNI+EI N+LSMTKK 
Sbjct: 61  ITSLHGNIEDEFESLCVETKVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIANYLSMTKKN 120

Query: 121 EIQHLKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKLRN 166
           EIQHLKDMLKTAEEQN  +QGRID LRKGVQDAS M DAV+KLRN
Sbjct: 121 EIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKLRN 165

[Close]

BLAST of CsaV3_4G007130 vs. TAIR 10
Match: AT4G19350.1 (embryo defective 3006 )

HSP 1 Score: 148.7 bits (374), Expect = 4.2e-36
Identity = 79/159 (49.69%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 5   HELDAPVSSRQIDLKKSFKLAVRPLLTSCSREEFRECFSRFTTAEQDYLHRLFIQVITSL 64
           HE D    SR+  LKKSFK  +R LLT+CS+++F + FS+F+ AEQ+ L +L+ +V+ +L
Sbjct: 6   HETDI-AGSRRTHLKKSFKSTLRHLLTACSKQDFVDIFSKFSGAEQELLFQLYTRVVVNL 65

Query: 65  HGNIEDEFESLCVETQVGLVFDNVEQLLEEQDLDPLYSKKTNIVEIYNFLSMTKKEEIQH 124
           H  IE+EF+  C ETQVG + D VE+L+EEQ LDPL+S KT+++ I   L+ +KK EIQ 
Sbjct: 66  HQTIEEEFDEQCHETQVGPILDTVEELVEEQSLDPLFSDKTDVMAIAYDLTTSKKNEIQK 125

Query: 125 LKDMLKTAEEQNWVIQGRIDDLRKGVQDASGMADAVKKL 164
           L  +L+ AEEQN   + RI  L+K  QD SG AD ++KL
Sbjct: 126 LTVLLQRAEEQNRQKEARISMLKKQTQDLSGTADRIEKL 163

The following BLAST results are available for this feature:

BLAST of CsaV3_4G007130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653244.1	1.2e-85	100.00	uncharacterized protein LOC101212745 [Cucumis sativus] >KGN53468.1 hypothetical ...	[more]
XP_008451872.1	7.9e-77	92.73	PREDICTED: uncharacterized protein LOC103493030 [Cucumis melo] >KAA0040183.1 unc...	[more]
XP_022931290.1	2.0e-72	87.88	uncharacterized protein LOC111437518 isoform X1 [Cucurbita moschata] >XP_0235528...	[more]
XP_038876216.1	3.8e-71	87.80	uncharacterized protein LOC120068468 [Benincasa hispida]	[more]
XP_022985332.1	3.8e-71	86.67	uncharacterized protein LOC111483373 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G007130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G007130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV94	5.9e-86	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056590 PE=4 SV=1	[more]
A0A5A7TAS4	3.8e-77	92.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BTB0	3.8e-77	92.73	uncharacterized protein LOC103493030 OS=Cucumis melo OX=3656 GN=LOC103493030 PE=...	[more]
A0A6J1EZ15	9.7e-73	87.88	uncharacterized protein LOC111437518 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J4K9	1.8e-71	86.67	uncharacterized protein LOC111483373 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CsaV3_4G007130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19350.1	4.2e-36	49.69	embryo defective 3006	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 115..135
None	No IPR available	PANTHER	PTHR15459:SF3	POLYAMINE-MODULATED FACTOR 1	coord: 8..160
IPR007128	Nuclear MIS12/MIND complex subunit PMF1/Nnf1	PFAM	PF03980	Nnf1	coord: 55..147 e-value: 7.6E-6 score: 26.2
IPR007128	Nuclear MIS12/MIND complex subunit PMF1/Nnf1	PANTHER	PTHR15459	POLYAMINE-MODULATED FACTOR 1	coord: 8..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G007130.1	CsaV3_4G007130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000818	nuclear MIS12/MIND complex