CsaV3_4G006600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G006600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 4438486 .. 4439068 (-)
RNA-Seq Expression	CsaV3_4G006600
Synteny	CsaV3_4G006600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGAATTTTCAAGTACGTTCTTTCCTCTATAAATTCTCTGTTTCGCTCTCTGTTTCCCTCACACAATCTCCCTCCATAACCTCACCTCTCTATCTCTCTCTCTCTCTCTATTAGATCTGAGAAGAAGAAAAAGATAAAACAAAAAATCATGATCAGTAACTTGATTTCAAGCTTGAACAAAAAGCTACAGGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

mRNA sequence

ATGGGTTTGAATTTTCAAGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

Coding sequence (CDS)

ATGGGTTTGAATTTTCAAGCTGTTGAAATCAGTAGCCGCTGCAAACGAACGAAGAAGACGGCTTACGTATACAGAGACAATCTCACCAAGAAGAACCACTCACCACCCTCGTCATCGTCCTCACCACAGCACCAGCCGGAGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCTGATACGGAACCAGTGATAATCGCCATTAGTACCGACAGAGAGGAGGAGGAGTTGGAGGTTGAAACAGAGAAGAAAGTAGTGAGAATTACGGTGAAATTGACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCAATGGTGGCGTTCTTGAATTCGGAGATGTGGCTTCTGAACTCATGAGGATTCCTCCAACTAGAGTTCGTTCATCTTTGGTGGCGAATTGA

Protein sequence

MGLNFQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLVAN*

Homology

[Close]

BLAST of CsaV3_4G006600 vs. NCBI nr
Match: KAE8649206.1 (hypothetical protein Csa_015041 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MGLNFQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFAD 60
           MGLNFQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFAD
Sbjct: 1   MGLNFQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFAD 60

Query: 61  TEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELM 120
           TEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELM
Sbjct: 61  TEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELM 120

Query: 121 RIPPTRVRSSLVAN 135
           RIPPTRVRSSLVAN
Sbjct: 121 RIPPTRVRSSLVAN 134

[Close]

BLAST of CsaV3_4G006600 vs. NCBI nr
Match: XP_011653217.1 (uncharacterized protein LOC105435188 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI
Sbjct: 14  QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT
Sbjct: 74  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 133

Query: 126 RVRSSLVAN 135
           RVRSSLVAN
Sbjct: 134 RVRSSLVAN 142

[Close]

BLAST of CsaV3_4G006600 vs. NCBI nr
Match: XP_008451951.1 (PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 uncharacterized protein E6C27_scaffold74G001940 [Cucumis melo var. makuwa] >TYK16569.1 uncharacterized protein E5676_scaffold21G003900 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 8.4e-53
Identity = 117/129 (90.70%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKVKKRVRFADTEPVI
Sbjct: 14  QAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAISTDREEE  E ETEKKVVRITVKLTKQEANRMLSRCSN GVLEFGDVASEL+RIPPT
Sbjct: 74  IAISTDREEE--EEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPT 133

Query: 126 RVRSSLVAN 135
           RV SSLVAN
Sbjct: 134 RVSSSLVAN 140

[Close]

BLAST of CsaV3_4G006600 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 188.0 bits (476), Expect = 5.5e-44
Identity = 104/129 (80.62%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEIS+RC+RTKKT YVYRD+L+KK  SPP SSS PQ    EIKKVKKRVRFADTEPVI
Sbjct: 14  QAVEISNRCRRTKKTTYVYRDDLSKKKQSPPPSSSQPQ---PEIKKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAI TD+EE   E ETEKKVVRITVKLTK+EANRMLSRCS+GGVLEFGDVA ELMRIP T
Sbjct: 74  IAI-TDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEFGDVACELMRIPAT 133

Query: 126 RVRSSLVAN 135
           RV SS+VAN
Sbjct: 134 RVSSSMVAN 138

[Close]

BLAST of CsaV3_4G006600 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-36
Identity = 95/126 (75.40%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEIS+RC+RTKKT  VYR +++KK    P S S  Q +P EI+KVKKRVRFADTEPVI
Sbjct: 14  QAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKP-EIEKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEFGDVASELMRIP  
Sbjct: 74  IAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAA 133

Query: 126 RVRSSL 132
           RV SS+
Sbjct: 134 RVSSSM 134

[Close]

BLAST of CsaV3_4G006600 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI
Sbjct: 14  QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT
Sbjct: 74  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 133

Query: 126 RVRSSLVAN 135
           RVRSSLVAN
Sbjct: 134 RVRSSLVAN 142

[Close]

BLAST of CsaV3_4G006600 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.1e-53
Identity = 117/129 (90.70%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKVKKRVRFADTEPVI
Sbjct: 14  QAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAISTDREEE  E ETEKKVVRITVKLTKQEANRMLSRCSN GVLEFGDVASEL+RIPPT
Sbjct: 74  IAISTDREEE--EEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPT 133

Query: 126 RVRSSLVAN 135
           RV SSLVAN
Sbjct: 134 RVSSSLVAN 140

[Close]

BLAST of CsaV3_4G006600 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.1e-53
Identity = 117/129 (90.70%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEIS+RCKRTKKT YVYRD+LTKK HSPP SSSSPQHQP EIKKVKKRVRFADTEPVI
Sbjct: 14  QAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAISTDREEE  E ETEKKVVRITVKLTKQEANRMLSRCSN GVLEFGDVASEL+RIPPT
Sbjct: 74  IAISTDREEE--EEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGDVASELLRIPPT 133

Query: 126 RVRSSLVAN 135
           RV SSLVAN
Sbjct: 134 RVSSSLVAN 140

[Close]

BLAST of CsaV3_4G006600 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 95/126 (75.40%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEIS+RC+RTKKT  VYR +++KK    P S S  Q +P EI+KVKKRVRFADTEPVI
Sbjct: 14  QAVEISNRCRRTKKTTNVYRRDMSKKKQ--PQSPSPSQGKP-EIEKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEFGDVASELMRIP  
Sbjct: 74  IAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAA 133

Query: 126 RVRSSL 132
           RV SS+
Sbjct: 134 RVSSSM 134

[Close]

BLAST of CsaV3_4G006600 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.7e-36
Identity = 92/126 (73.02%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 6   QAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVI 65
           QAVEIS+RC+RTKKT  VYR +++KK      S   P     EI+KVKKRVRFADTEPVI
Sbjct: 14  QAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKVKKRVRFADTEPVI 73

Query: 66  IAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPT 125
           IAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEFGDVASELMRIP  
Sbjct: 74  IAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAA 132

Query: 126 RVRSSL 132
           RV SS+
Sbjct: 134 RVSSSM 132

[Close]

BLAST of CsaV3_4G006600 vs. TAIR 10
Match: AT4G23880.1 (unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-05
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 26  DNLTKKNHSPPSSSSSPQHQPEEIKKVKKRVRFADTEPVIIAISTDREEEELE-VETEKK 85
           D   KK  + P      Q +  +I + KK V F D   +    +   E+E L+ VE +++
Sbjct: 73  DEQNKKPLAKPRKVVRFQLENNKIFEPKKTVSFDDDHELKPKENPLEEKESLKMVEGKEE 132

Query: 86  VVRITVKLTKQEANRMLSRCSNGGVLEFGDVASELMRIPPTRVRSSLV 133
           VVR+ +K+TK EA R+LS+C N  VL+   +  ++  +P  +++ ++V
Sbjct: 133 VVRVKIKMTKHEAQRLLSKCKNDSVLKLEHLMDQIAHVPVHQLQVAMV 180

The following BLAST results are available for this feature:

BLAST of CsaV3_4G006600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649206.1	1.6e-64	100.00	hypothetical protein Csa_015041 [Cucumis sativus]	[more]
XP_011653217.1	2.9e-61	100.00	uncharacterized protein LOC105435188 [Cucumis sativus]	[more]
XP_008451951.1	8.4e-53	90.70	PREDICTED: uncharacterized protein LOC103493098 [Cucumis melo] >KAA0044901.1 unc...	[more]
XP_038906331.1	5.5e-44	80.62	uncharacterized protein LOC120092170 [Benincasa hispida]	[more]
XP_022985430.1	2.5e-36	75.40	uncharacterized protein LOC111483436 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G006600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G006600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE1	1.4e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]
A0A5D3D246	4.1e-53	90.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	4.1e-53	90.70	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A6J1JBA8	1.2e-36	75.40	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]
A0A6J1EU86	7.7e-36	73.02	uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376...	[more]

BLAST of CsaV3_4G006600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23880.1	1.1e-05	30.56	unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..53
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 11..132
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 11..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G006600.1	CsaV3_4G006600.1	mRNA