CsaV3_4G006020 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G006020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	nuclear transcription factor Y subunit C-1-like
Location	chr4: 3971972 .. 3973216 (-)
RNA-Seq Expression	CsaV3_4G006020
Synteny	CsaV3_4G006020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACCTTTAATCCTATCAATCATGTTTATAGACTTAATTTTTCTTTAAAAAAAAATCTTAGCAAACTAGACCTAAATTTTAAAACTGAAGGTTAAATTTGAACTATTATAAAATCGAAGGTAATGAATCAATTATAAAATTAGGTAAATAAATCAATTGTTTTTAAAATAAAATTTGTCAAAAGAAAGAAAAAACTATAACATTGAAATATTTTAGAGTTTGGTTAAAGTAAATACAAACCTCAAAGTTCACTAAATTAAAAATGTTAGGTTGAATGATTAATATATACGAGAGAGTGACATCACCCTAAAAGGTCTAATTTGTCTTAACCAACAAAAACAAATATTTAAATCATAAGTTTAGTATAATTAATTATCATAAACCTTCCCTTAATCATGATTCCATTTGTTAAAATAAACAAAAAAAAAAGTGTTAATTAGACTGAGTAACCTTAATCGGAGGAGCAGGCTGGCCGGCCGCAGTAGCATTCCAATTTCCACAACCTCTATAAATTCACAATCCTCCTTTCATGAATCTTCAATAGAAATCTCGAAGAATCTCCGGCTGTTTTCCGATCCAATGAGGCAAGCGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAAGATGATCTCCGGTGAGGCGCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGTGAAAGTGAAACTATTTCGGTAGGTTGTTGAAACTTAAAAAGAATGGATTGAAGTGTTCTCCATTTCTCTCTGTTTGGAGTGAATTGAAATTTCAATTTGTCAATCTATGATAAAATGTAAAATATGATTCTCATATCTGTGGTTCCATTTATAACAAACAATTTCAGTTATGTCTTTCTCTCCCACTTAAATTATCAAAACAATCATACTCAAAAAATTTCAATGTATCGTAATGGGTAAGAACCACTAATTCATTAAAAACTAAATAACAATAGATCGATTTTAATAGGTTTATAATTCAATTAAACCATCATAGATTAAAACTTATAGTAAAG

mRNA sequence

ATGAGGCAAGCGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAAGATGATCTCCGGTGAGGCGCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGTGAAAGTGAAACTATTTCGGTAGGTTGTTGA

Coding sequence (CDS)

ATGAGGCAAGCGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAAGATGATCTCCGGTGAGGCGCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGTGAAAGTGAAACTATTTCGGTAGGTTGTTGA

Protein sequence

MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC*

Homology

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BLAST of CsaV3_4G006020 vs. NCBI nr
Match: XP_004146566.1 (nuclear transcription factor Y subunit C-3 [Cucumis sativus] >KGN53346.1 hypothetical protein Csa_014665 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 5.4e-59
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC 120
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC 119

[Close]

BLAST of CsaV3_4G006020 vs. NCBI nr
Match: XP_008452022.1 (PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo] >KAA0044837.1 nuclear transcription factor Y subunit C-1-like [Cucumis melo var. makuwa] >TYK16627.1 nuclear transcription factor Y subunit C-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 221.5 bits (563), Expect = 4.0e-54
Identity = 113/119 (94.96%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC 120
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA  A  GD+GESE ISVGC
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA--ATAGDVGESENISVGC 117

[Close]

BLAST of CsaV3_4G006020 vs. NCBI nr
Match: XP_038877432.1 (nuclear transcription factor Y subunit C-1-like [Benincasa hispida])

HSP 1 Score: 217.2 bits (552), Expect = 7.5e-53
Identity = 112/123 (91.06%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAT----PAATGDLGESETIS 120
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAT     AA GDL ESE +S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATATAAAAAGGDLAESENMS 120

[Close]

BLAST of CsaV3_4G006020 vs. NCBI nr
Match: XP_023552994.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.8 bits (538), Expect = 3.2e-51
Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAAT--GDLGESETISV 118
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET TPAA+  GDL ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTPAASAAGDLAESETMSI 119

[Close]

BLAST of CsaV3_4G006020 vs. NCBI nr
Match: XP_022985461.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita maxima])

HSP 1 Score: 204.5 bits (519), Expect = 5.0e-49
Identity = 105/122 (86.07%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPA-----ATGDLGESETI 118
           RSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIF+ET T A     A GDL ESET+
Sbjct: 61  RSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETM 120

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVG 119
           D+A+A+  TD+FDFL+ ++  E       G +G     + G
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAG 168

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy Swiss-Prot
Match: A6BLW4 (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + 
Sbjct: 68  HQLPLARIKKIM-KADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRN 127

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDLG 111
           DVA+AI  TDVFDFL+ ++  E A       LG
Sbjct: 128 DVAAAIARTDVFDFLVDIVPREEAKEEPGSALG 159

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy Swiss-Prot
Match: Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-21
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLIFNE 100
           D+A+AI  TD+FDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-21
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TD+FDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy Swiss-Prot
Match: Q655V5 (Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-20
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP++F+KACE+FI ELT RSWM   ++K+R L K 
Sbjct: 100 HSLPLARIKKIM-KADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKN 159

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TD++DFL+ ++
Sbjct: 160 DIAAAITRTDMYDFLVDIV 177

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy TrEMBL
Match: A0A0A0KZN6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049050 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC 120
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC 119

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy TrEMBL
Match: A0A5A7TSI3 (Nuclear transcription factor Y subunit C-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004550 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 113/119 (94.96%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC 120
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA  A  GD+GESE ISVGC
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA--ATAGDVGESENISVGC 117

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy TrEMBL
Match: A0A1S3BSA0 (nuclear transcription factor Y subunit C-1-like OS=Cucumis melo OX=3656 GN=LOC103493153 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 113/119 (94.96%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVGC 120
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA  A  GD+GESE ISVGC
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA--ATAGDVGESENISVGC 117

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy TrEMBL
Match: A0A6J1J883 (nuclear transcription factor Y subunit C-4-like OS=Cucurbita maxima OX=3661 GN=LOC111483463 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 105/122 (86.07%), Postives = 110/122 (90.16%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPA-----ATGDLGESETI 118
           RSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIF+ET T A     A GDL ESET+
Sbjct: 61  RSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETM 120

[Close]

BLAST of CsaV3_4G006020 vs. ExPASy TrEMBL
Match: A0A6J1EZM2 (nuclear transcription factor Y subunit C-4-like OS=Cucurbita moschata OX=3662 GN=LOC111437669 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.1e-49
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPA---ATGDLGESETISV 118
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET T A   A  +L ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120

[Close]

BLAST of CsaV3_4G006020 vs. TAIR 10
Match: AT1G54830.2 (nuclear factor Y, subunit C3 )

HSP 1 Score: 104.0 bits (258), Expect = 8.6e-23
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVG 119
           D+A+A+  TD+FDFL+ ++  E       G +G     + G
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAG 168

[Close]

BLAST of CsaV3_4G006020 vs. TAIR 10
Match: AT1G54830.1 (nuclear factor Y, subunit C3 )

HSP 1 Score: 104.0 bits (258), Expect = 8.6e-23
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVG 119
           D+A+A+  TD+FDFL+ ++  E       G +G     + G
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAG 168

[Close]

BLAST of CsaV3_4G006020 vs. TAIR 10
Match: AT1G54830.3 (nuclear factor Y, subunit C3 )

HSP 1 Score: 104.0 bits (258), Expect = 8.6e-23
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDLGESETISVG 119
           D+A+A+  TD+FDFL+ ++  E       G +G     + G
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAG 168

[Close]

BLAST of CsaV3_4G006020 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-22
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLIFNE 100
           D+A+AI  TD+FDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]

BLAST of CsaV3_4G006020 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-22
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLIFNE 100
           D+A+AI  TD+FDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

The following BLAST results are available for this feature:

BLAST of CsaV3_4G006020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146566.1	5.4e-59	100.00	nuclear transcription factor Y subunit C-3 [Cucumis sativus] >KGN53346.1 hypothe...	[more]
XP_008452022.1	4.0e-54	94.96	PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo] >KAA00...	[more]
XP_038877432.1	7.5e-53	91.06	nuclear transcription factor Y subunit C-1-like [Benincasa hispida]	[more]
XP_023552994.1	3.2e-51	89.92	nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985461.1	5.0e-49	86.07	nuclear transcription factor Y subunit C-4-like [Cucurbita maxima]	[more]

BLAST of CsaV3_4G006020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVL3	1.2e-21	50.50	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
A6BLW4	1.6e-21	58.06	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9FMV5	3.5e-21	62.20	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SMP0	6.0e-21	63.29	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q655V5	1.0e-20	60.76	Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of CsaV3_4G006020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZN6	2.6e-59	100.00	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0490...	[more]
A0A5A7TSI3	1.9e-54	94.96	Nuclear transcription factor Y subunit C-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BSA0	1.9e-54	94.96	nuclear transcription factor Y subunit C-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1J883	2.4e-49	86.07	nuclear transcription factor Y subunit C-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EZM2	7.1e-49	85.83	nuclear transcription factor Y subunit C-4-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsaV3_4G006020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54830.2	8.6e-23	50.50	nuclear factor Y, subunit C3	[more]
AT1G54830.1	8.6e-23	50.50	nuclear factor Y, subunit C3	[more]
AT1G54830.3	8.6e-23	50.50	nuclear factor Y, subunit C3	[more]
AT5G63470.1	2.5e-22	62.20	nuclear factor Y, subunit C4	[more]
AT5G63470.2	2.5e-22	62.20	nuclear factor Y, subunit C4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 19..83 e-value: 2.6E-18 score: 66.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..97 e-value: 1.1E-30 score: 108.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 15..92
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 1..102
None	No IPR available	PANTHER	PTHR10252:SF41	HAP5 SUBUNIT OF HAP COMPLEX	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G006020.1	CsaV3_4G006020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046982	protein heterodimerization activity