CsaV3_4G005660 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G005660
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Small nuclear ribonucleoprotein Sm D2
Location	chr4: 3749071 .. 3752152 (+)
RNA-Seq Expression	CsaV3_4G005660
Synteny	CsaV3_4G005660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATAGAGTGAGGGTCATCTCATAAAAGTTGTAATTTAATTGGTATGTTTCAACCCAAAACGCAAGAAAACCTCGCGTTTAGGGTTTTTTCATCCTTTTTTTTTCTTTTTTGAAAAAGAGCAATATGAACCTTAGTTTTTCCACGCGCGAGCCATTTCTCCTGCTCATCTTCTCCTTCGATCTTCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCTTTCCTTCACCTTCACTCTTCTTCTCTCCCGCCGGTAAGTGTTCTCTCTCTTTCTCTCTCCATCTCACTCTCCGTTTCGTTTTACAGCTACTCTTTCTTTCTCTCTTCGTTTAGTTTCACTGTTTCCTCCTACTGAATTTTTTATGCAGTTTCCCCCATTACTTTGTTCTTAAGATATTGCATCTGACTTATATGTTATTTTCTAAGATATTGCATCTCTTCTCTCGCTGTGAATTTTTCTTGAATAGTTTAACCTAGACTTTGGTCTCTCTGGAGCATGATGTTCTTTAGAGTTTAGGGTAACCTTAGGAACATACTGTTTATGAAATTATGCTGGTGCGGTTTTATTTACTGTCATTCTTTCTATGTGCTTATGGTCGTATGTTTGTCATGTAATTGCAGCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCACTTACAACATGAGGTATTGTGTTTTTCGGTATTTGTATACTTTGTTTGTTCGCACATCTTGGTCTTTTTTGTTCTTTTACTAAATTCTTTACATACTAATGGGTTTCGTGTCCTCTTTTTTGTCTTCAATTGCAGCCGACCGATGGAGGAAGATGTAAGTTCCTTCAGTCTGTTATGCTTTCAATTTTAGTACTTTCATCCAATATATGTTGCCTTTGCCTAATTGGTCTAGCCTCTATATTAGCACAAGTGTTAAAGAATCATGACTTGCTCTCGAGTCATTACCAACGCTTTTCATTGTATAATCTCTGCGGCTTCTTTTTCTTTTCGTCTACACAACTCTTTTAAGTTGGAAGAAAATGTTGTCCTTCGTATCGAAAAATCATGATATTTTTTTCCACAACTGTTCGACTAGTCCACATGAAGCAACTATTAGACTCTTTCAATTGAAGTTATTAATTTTTGGGTAAGGTTTTGTCATGTTTTTTTAATTAGTCTATTTATTTTTTAAACCTTTAGTTAAAAAGGTCGGCTTCATGTCAAATTTAAATATAACCAAATTCTACTGGTTGAATGATATTTTTATATATTGAGAGTTGATGCTCATAAACCATTTGACAAGTTCAACTGGCCTTTGTGTTTGGACCAGGAAGGCCAGATATTTTTTATGTCTTCAAAAAGAAATTTTCTTATTTTCTATCATTCACCTGGCTACCGTGAATGATGTTTCTTGAACCTCTAGTAGAGCAATACCAGTTCTATGTTGGGAATTCGTTGGTAGTTGGTCTTTTAAAAGGGTTTAATTATTAGCATTGTAATTTCTTTCTCAATAAAAATCTATTTGTTTCTGTTAAATGTGAAATTTTTGCTATCTTTCAGGTGCTATGATTAGCAAGAAATGATATGATTTCTTGAGACTAGTTTTGTACCTTTTTAAGTGAAACTGATGATCTTTTGATTCAGTTCTGTTTTCTCTTTCAACTTTGTTTCTATAGTTGGTTAATGTATTTTTTTCCCTATCCATTTGATGGTTGTTTACCAACTTCTTACACTTTTGCATTCTACTTATGAAAAAATGTTTAGTTTTTAATTAAAAAAAAATGAACTGTGACTTTTCCATGAAACTCATTTCAATAAGTAAATTACCATAAAGGTTTCATTTTTTCTTTCTTTCTAGTGTTAGCTTAATGTTCTCTCTCTAGAGTTTTTTTTTTTCTTGGTTTAATCTCTCGAGTCACCCTTCCTTAGTTTGTTCCTGTCATACTGCAAAATCCTTGGACTTGTGTTCTATTTTTTTTTTTGACTTCCAACTCTACTGAAGTGTTTCTACAAACACAATTACGAATTACTTGCTTTGAACTCTCTGCAGACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCATTTGTTTGTGTGTTTAACAGTTCCACTTGTAAATCAAGGCATAACTGTTCAAGTGAAAATGATGTTTATATGTTTTGGACCTTCTTGACAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTTTGTCTTATTGATGTGTGCTTACTATTTACTCTTTTTCTTGCTTAGACTCAAGTCATGGATCTTATGTTGTATTACTATGACCAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAAGAAGAGTTGATCATCTCATCATATGTTCGGTTTGGATTCTCAAGTCAACTCCATTTGTCTACCAATCTTTTTTGCTTGTCATCAAACTTTCATTTGATAGCCTGACGGTCTGCTAAGCTTGGGGCTATCTATATCAGTTTGTAGTTCGTTTTGATTTTTCATTCCCGCAAACCATTTACCAAATATTGTAACTCTAGAAAGTGTATTTGTTTAGGTATGGGAGATTATTAGTAGAAATGCCATATGTTTTTAACGTGTGTATTGAATAGAGTTTATCTTTGCAACTGTTGAGACGTTATCTGTTTTGATCACAAGTGGATATTATCATTCGTAATTACGAGGATCTTTTGGGCATGGTAGATGATGTGCTGTTTCTCTAGTCTTGTTCCTTGTTGCATATGTTCATGTGATACCAAGGAATCAAATTTTCATCGGGATGTCAGTGTTTGTTTGTTGTGTTCATAAATCTTAGGGTTCAGCAATCATCAGTTGCTTTTGCATTTGTGCACACTCAATTACTCTTCAACTTATGGTAATCGACATATGTTAGCTGTATTTCCTTCTTTT

mRNA sequence

ATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAA

Coding sequence (CDS)

ATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*

Homology

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BLAST of CsaV3_4G005660 vs. NCBI nr
Match: XP_004146504.1 (small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452074.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452075.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_022929177.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_022985082.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima] >XP_023551877.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo] >KAE8649185.1 hypothetical protein Csa_014590 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 6.8e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of CsaV3_4G005660 vs. NCBI nr
Match: KAA0044802.1 (small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 6.8e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 27  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 86

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 87  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 133

[Close]

BLAST of CsaV3_4G005660 vs. NCBI nr
Match: KAG6577216.1 (U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.2 bits (552), Expect = 6.8e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 804 MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 863

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 864 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 910

[Close]

BLAST of CsaV3_4G005660 vs. NCBI nr
Match: XP_022983472.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTNKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of CsaV3_4G005660 vs. NCBI nr
Match: XP_027340559.1 (small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-45
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-45
Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+ ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 13  EELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 72

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 73  WTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.1e-41
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+ +  E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74  WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy TrEMBL
Match: A0A1S3BTT5 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy TrEMBL
Match: A0A5A7TNA0 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004930 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 27  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 86

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 87  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 133

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy TrEMBL
Match: A0A6J1J3W3 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC111483160 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy TrEMBL
Match: A0A0A0KUK4 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 188

[Close]

BLAST of CsaV3_4G005660 vs. ExPASy TrEMBL
Match: A0A6J1EM19 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111435853 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of CsaV3_4G005660 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-52
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CsaV3_4G005660 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-52
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CsaV3_4G005660 vs. TAIR 10
Match: AT3G62840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-52
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MSRPMEEDTS-KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60
           MS+PMEEDT+ K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMEEDTNGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 60

Query: 61  LENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           LENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CsaV3_4G005660 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-52
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 60
           MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 61  VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           VLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of CsaV3_4G005660 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-52
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 60
           MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 61  VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           VLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

The following BLAST results are available for this feature:

BLAST of CsaV3_4G005660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146504.1	6.8e-53	100.00	small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTE...	[more]
KAA0044802.1	6.8e-53	100.00	small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662....	[more]
KAG6577216.1	6.8e-53	100.00	U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022983472.1	1.5e-52	99.07	small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima]	[more]
XP_027340559.1	1.5e-52	99.07	small nuclear ribonucleoprotein Sm D2-like [Abrus precatorius]	[more]

BLAST of CsaV3_4G005660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZF8	1.4e-45	87.00	Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1	[more]
P62316	1.4e-45	87.00	Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=...	[more]
P62317	1.4e-45	87.00	Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV...	[more]
Q9VI10	3.2e-45	86.00	Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722...	[more]
Q18786	2.1e-41	81.00	Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of CsaV3_4G005660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTT5	3.3e-53	100.00	Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE...	[more]
A0A5A7TNA0	3.3e-53	100.00	Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1J3W3	3.3e-53	100.00	Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC11148316...	[more]
A0A0A0KUK4	3.3e-53	100.00	Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730...	[more]
A0A6J1EM19	3.3e-53	100.00	Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111435...	[more]

BLAST of CsaV3_4G005660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47640.2	1.2e-52	93.52	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.3	1.2e-52	93.52	Small nuclear ribonucleoprotein family protein	[more]
AT3G62840.2	1.2e-52	93.52	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	1.6e-52	92.66	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.4	1.6e-52	92.66	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 25..104 e-value: 5.1E-20 score: 82.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 28..102 e-value: 6.2E-19 score: 67.5
None	No IPR available	GENE3D	2.30.30.100		coord: 15..107 e-value: 6.9E-42 score: 143.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR12777:SF6	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	coord: 1..107
IPR027248	Small nuclear ribonucleoprotein Sm D2	PANTHER	PTHR12777	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	coord: 1..107
IPR027248	Small nuclear ribonucleoprotein Sm D2	CDD	cd01720	Sm_D2	coord: 17..106 e-value: 9.06339E-62 score: 180.99
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 20..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G005660.1	CsaV3_4G005660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0030532	small nuclear ribonucleoprotein complex