CsaV3_4G005290 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G005290
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ferulate 5-hydroxylase
Location	chr4: 3491229 .. 3491555 (+)
RNA-Seq Expression	CsaV3_4G005290
Synteny	CsaV3_4G005290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATGAGAGACCAACTCACCCACCGTGGCCTCGCCGCCTTGGCCAAACGGTATGGCGGAATCTTCCACCTCCACATGGTCGTCATTTCCGACCGTGACGCTGCTCGGAATGTGCTTCAGGTCTGATCACCATCACCATGACTTTTAAGTAACAAACTTTAGTACTCTATAAATTTTAACAAGGCTGTATAGTTTTAGTTTTCATTTTTTTGAAATTTATTCTTAGATTCCCTCCCGAGCTTCTTTGAAGAAACTACAAGTACAAAATTGGGTTTTCAACAGATATTACAAGACTACGATGTTGATGACCAACAACGACAATGA

mRNA sequence

ATGCTGATGAGAGACCAACTCACCCACCGTGGCCTCGCCGCCTTGGCCAAACGGTATGGCGGAATCTTCCACCTCCACATGGTCGTCATTTCCGACCGTGACGCTGCTCGGAATGTGCTTCAGATTCCCTCCCGAGCTTCTTTGAAGAAACTACAAGTACAAAATTGGGTTTTCAACAGATATTACAAGACTACGATGTTGATGACCAACAACGACAATGA

Coding sequence (CDS)

ATGCTGATGAGAGACCAACTCACCCACCGTGGCCTCGCCGCCTTGGCCAAACGGTATGGCGGAATCTTCCACCTCCACATGGTCGTCATTTCCGACCGTGACGCTGCTCGGAATGTGCTTCAGATTCCCTCCCGAGCTTCTTTGAAGAAACTACAAGTACAAAATTGGGTTTTCAACAGATATTACAAGACTACGATGTTGATGACCAACAACGACAATGA

Protein sequence

MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQVQNWVFNRYYKTTMLMTNNDNX

Homology

[Close]

BLAST of CsaV3_4G005290 vs. NCBI nr
Match: KGN53283.2 (hypothetical protein Csa_015196, partial [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQVQNWVFNR 60
          MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQVQNWVFNR
Sbjct: 1  MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQVQNWVFNR 60

Query: 61 YYKTTMLMTNNDN 74
          YYKTTMLMTNNDN
Sbjct: 61 YYKTTMLMTNNDN 73

[Close]

BLAST of CsaV3_4G005290 vs. NCBI nr
Match: KAA0064209.1 (amino acid permease 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 5.7e-11
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQIPSRASL 49
           MLMRDQLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ   R  +
Sbjct: 50  MLMRDQLTHRGLAALAKRYGGIFHLHIGFVHMVVISDPDAARNVLQAAHRLKI 102

[Close]

BLAST of CsaV3_4G005290 vs. NCBI nr
Match: TYK02819.1 (amino acid permease 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 5.7e-11
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQIPSRASL 49
           MLMRDQLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ   R  +
Sbjct: 50  MLMRDQLTHRGLAALAKRYGGIFHLHIGFVHMVVISDPDAARNVLQAAHRLKI 102

[Close]

BLAST of CsaV3_4G005290 vs. NCBI nr
Match: KAA0044769.1 (cytochrome P450 84A1-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 4.8e-10
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          MLMR QLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ+
Sbjct: 50 MLMRHQLTHRGLAALAKRYGGIFHLRIGFVHMVVISDPDAARNVLQV 96

[Close]

BLAST of CsaV3_4G005290 vs. NCBI nr
Match: XP_008453715.1 (PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 84A1-like [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          ML+R QLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ+
Sbjct: 50 MLLRHQLTHRGLAALAKRYGGIFHLRIGFVHMVVISDPDAARNVLQV 96

[Close]

BLAST of CsaV3_4G005290 vs. ExPASy Swiss-Prot
Match: Q42600 (Cytochrome P450 84A1 OS=Arabidopsis thaliana OX=3702 GN=CYP84A1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGG+ H     LHM  +S  + AR VLQ+
Sbjct: 53 MLMMDQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQV 99

[Close]

BLAST of CsaV3_4G005290 vs. ExPASy Swiss-Prot
Match: F4JW83 (Cytochrome P450 84A4 OS=Arabidopsis thaliana OX=3702 GN=CYP84A4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          +LM +Q  HRGLA L++ YGG+ HL     H+ V+S  D AR VLQ+
Sbjct: 45 ILMMNQFNHRGLAKLSRIYGGLLHLRLGFSHIFVVSSPDIARQVLQV 91

[Close]

BLAST of CsaV3_4G005290 vs. ExPASy TrEMBL
Match: A0A0A0KWL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043900 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.3e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQV 54
          MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQ+
Sbjct: 1  MLMRDQLTHRGLAALAKRYGGIFHLHMVVISDRDAARNVLQIPSRASLKKLQI 53

[Close]

BLAST of CsaV3_4G005290 vs. ExPASy TrEMBL
Match: A0A5D3BXJ5 (Amino acid permease 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00090 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-11
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQIPSRASL 49
           MLMRDQLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ   R  +
Sbjct: 50  MLMRDQLTHRGLAALAKRYGGIFHLHIGFVHMVVISDPDAARNVLQAAHRLKI 102

[Close]

BLAST of CsaV3_4G005290 vs. ExPASy TrEMBL
Match: A0A5A7VFA3 (Amino acid permease 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001540 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.8e-11
Identity = 41/53 (77.36%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQIPSRASL 49
           MLMRDQLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ   R  +
Sbjct: 50  MLMRDQLTHRGLAALAKRYGGIFHLHIGFVHMVVISDPDAARNVLQAAHRLKI 102

[Close]

BLAST of CsaV3_4G005290 vs. ExPASy TrEMBL
Match: A0A5A7TU50 (Cytochrome P450 84A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00590 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          MLMR QLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ+
Sbjct: 50 MLMRHQLTHRGLAALAKRYGGIFHLRIGFVHMVVISDPDAARNVLQV 96

[Close]

BLAST of CsaV3_4G005290 vs. ExPASy TrEMBL
Match: A0A5D3CYW4 (Cytochrome P450 84A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005280 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          ML+R QLTHRGLAALAKRYGGIFHL     HMVVISD DAARNVLQ+
Sbjct: 50 MLLRHQLTHRGLAALAKRYGGIFHLRIGFVHMVVISDPDAARNVLQV 96

[Close]

BLAST of CsaV3_4G005290 vs. TAIR 10
Match: AT4G36220.1 (ferulic acid 5-hydroxylase 1 )

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-08
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFH-----LHMVVISDRDAARNVLQI 43
          MLM DQLTHRGLA LAK+YGG+ H     LHM  +S  + AR VLQ+
Sbjct: 53 MLMMDQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQV 99

[Close]

BLAST of CsaV3_4G005290 vs. TAIR 10
Match: AT5G04330.1 (Cytochrome P450 superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 7.7e-06
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 1  MLMRDQLTHRGLAALAKRYGGIFHL-----HMVVISDRDAARNVLQI 43
          +LM +Q  HRGLA L++ YGG+ HL     H+ V+S  D AR VLQ+
Sbjct: 45 ILMMNQFNHRGLAKLSRIYGGLLHLRLGFSHIFVVSSPDIARQVLQV 91

The following BLAST results are available for this feature:

BLAST of CsaV3_4G005290 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53283.2	1.5e-32	100.00	hypothetical protein Csa_015196, partial [Cucumis sativus]	[more]
KAA0064209.1	5.7e-11	77.36	amino acid permease 3-like [Cucumis melo var. makuwa]	[more]
TYK02819.1	5.7e-11	77.36	amino acid permease 3-like [Cucumis melo var. makuwa]	[more]
KAA0044769.1	4.8e-10	82.98	cytochrome P450 84A1-like [Cucumis melo var. makuwa]	[more]
XP_008453715.1	1.1e-09	80.85	PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 84A1-like [Cucumis melo]	[more]

BLAST of CsaV3_4G005290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42600	2.3e-07	59.57	Cytochrome P450 84A1 OS=Arabidopsis thaliana OX=3702 GN=CYP84A1 PE=1 SV=1	[more]
F4JW83	1.1e-04	48.94	Cytochrome P450 84A4 OS=Arabidopsis thaliana OX=3702 GN=CYP84A4 PE=1 SV=1	[more]

BLAST of CsaV3_4G005290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWL6	7.3e-20	98.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G043900 PE=4 SV=1	[more]
A0A5D3BXJ5	2.8e-11	77.36	Amino acid permease 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7VFA3	2.8e-11	77.36	Amino acid permease 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5A7TU50	2.3e-10	82.98	Cytochrome P450 84A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3CYW4	5.2e-10	80.85	Cytochrome P450 84A1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CsaV3_4G005290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36220.1	1.7e-08	59.57	ferulic acid 5-hydroxylase 1	[more]
AT5G04330.1	7.7e-06	48.94	Cytochrome P450 superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G005290.1	CsaV3_4G005290.1	mRNA