CsaV3_4G003970 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G003970
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 2421353 .. 2422338 (+)
RNA-Seq ExpressionCsaV3_4G003970
SyntenyCsaV3_4G003970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATATTTCTTCTTATATATAAGCCACTGAAATCAAGCTTGGTGCTCCACACAGCGCTATGGCTTCTAGTAATGCTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCCTCTTTGCCTCCAATAATTTTGCCACAAGGAACTTGCTTTCTATGCCTCATCTCGCTCGTAAGTTACTCTCTTGTATCACATTGAATCTTAATGTTTAAATCTGATGTTTTTTCAGTCAGATTGAAATTATTTTTAGAGTGTACTTAAAAGTCATTTTAAAATATACTACAAGAAATTTGGAAATACATACTATGTATATAGAATCTAAATCAATTCATATATATTGAAAATGAGAACTAAACACTTAAAAGGGTGATAACTACTTTAATTTTTAATTTTCTGTTTTTGAAATAATTTTTCAAACTTTTCTTAATTTTCTAACTGTGCGAAAAATATTTGAATACTTAATTAAATTTCACAATATGGAAAAAAGTACTTGCTACTTAAGATTTTATACAAATTATAATAAGAAAAAAAATAGACTTAATAAAAATTCAAAAGATGAAATGGTTATCAAACAAGATCAATATAATTGAAAAAGGTAACGTAAAGAAATTGTGGTTGATTTTGATCAGATGTAAATCATGATGAGATGACCAATTCTCCACCAACACCACCAAAAGATGGACCATGGGGTGGAAACGTTTGAGGATAACACTGCCTTTCTTTCTTTTCTTTTGTTTTAACTAGACGTTTCCATAACTTGTTATTTCCATACATCTAAAATAAGAAATGAACTTGAGTGTAGTTGGGATGAACAATATTATCTTCTTTCGAAATATGTATTTGTATGGTCAAAAGGTGGAAAGCATAGTGGTTCGATGCAAGTTAGGTTGGTTGTACTTGATCGTGGCTTGTTGAATGAAAATTTAAACTTTCAATCTTGTGGATAAATATGAATATACTTTTAATTGTTGTTAGTTCATGACGTG

mRNA sequence

ATGGCTTCTAGTAATGCTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCCTCTTTGCCTCCAATAATTTTGCCACAAGGAACTTGCTTTCTATGCCTCATCTCGCTCATGTAAATCATGATGAGATGACCAATTCTCCACCAACACCACCAAAAGATGGACCATGGGGTGGAAACGTTTGA

Coding sequence (CDS)

ATGGCTTCTAGTAATGCTCTATGCAAACTAATAATGCTCATCTTAGTTACCATCCTCTTTGCCTCCAATAATTTTGCCACAAGGAACTTGCTTTCTATGCCTCATCTCGCTCATGTAAATCATGATGAGATGACCAATTCTCCACCAACACCACCAAAAGATGGACCATGGGGTGGAAACGTTTGA

Protein sequence

MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGNV*
Homology
BLAST of CsaV3_4G003970 vs. NCBI nr
Match: KAE8649132.1 (hypothetical protein Csa_015133 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGN 60
          MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGN
Sbjct: 1  MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGN 60

Query: 61 V 62
          V
Sbjct: 61 V 61

BLAST of CsaV3_4G003970 vs. NCBI nr
Match: KAA0044642.1 (hypothetical protein E6C27_scaffold46G003970 [Cucumis melo var. makuwa] >TYK16946.1 hypothetical protein E5676_scaffold130G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 1  MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNS-------PPTPPK 58
          MAS+N LCKLIMLILVTI+FASNN ATRNLLSM HLAHV HDEM N+       P +PP+
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMSHLAHVKHDEMNNTSVPAPNPPKSPPE 60

BLAST of CsaV3_4G003970 vs. NCBI nr
Match: KAE8649133.1 (hypothetical protein Csa_014439, partial [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-13
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1   MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGN 60
           MAS+N LCKLIMLILVTI+FASNN ATRNLLSMPHLA+V  DE+ N+PP    D PW GN
Sbjct: 41  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEI-NNPPQTADDEPWDGN 100

Query: 61  V 62
           +
Sbjct: 101 I 100

BLAST of CsaV3_4G003970 vs. NCBI nr
Match: KAG6600182.1 (hypothetical protein SDJN03_05415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 4.3e-04
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 2  ASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTN------SPPTPPKDG 58
          A + ALCKL  ++++TI+  SNN A RNLL +P   HV  DEM N      +PP  P DG
Sbjct: 6  ARTIALCKL--MLVLTIILPSNNVAARNLLDVPRFTHVKRDEMNNTNVGVPNPPQSPGDG 65

BLAST of CsaV3_4G003970 vs. ExPASy TrEMBL
Match: A0A5A7TMV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00830 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0

Query: 1  MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNS-------PPTPPK 58
          MAS+N LCKLIMLILVTI+FASNN ATRNLLSM HLAHV HDEM N+       P +PP+
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMSHLAHVKHDEMNNTSVPAPNPPKSPPE 60

BLAST of CsaV3_4G003970 vs. ExPASy TrEMBL
Match: A0A0A0KZ52 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022280 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  MASSNALCKLIMLILVTILFASNNFATRNLLSMPHLAHVNHDEMTNSPPTPPKDGPWGGN 60
          MAS+N LCKLIMLILVTI+FASNN ATRNLLSMPHLA+V  DE+ N+PP    D PW GN
Sbjct: 1  MASNNVLCKLIMLILVTIIFASNNVATRNLLSMPHLANVKRDEI-NNPPQTADDEPWDGN 60

Query: 61 V 62
          +
Sbjct: 61 I 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649132.13.4e-25100.00hypothetical protein Csa_015133 [Cucumis sativus][more]
KAA0044642.12.7e-1471.88hypothetical protein E6C27_scaffold46G003970 [Cucumis melo var. makuwa] >TYK1694... [more]
KAE8649133.15.1e-1372.13hypothetical protein Csa_014439, partial [Cucumis sativus][more]
KAG6600182.14.3e-0448.39hypothetical protein SDJN03_05415, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TMV81.3e-1471.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KZ522.5e-1372.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G003970.1CsaV3_4G003970.1mRNA