CsaV3_4G002530 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G002530
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 1549698 .. 1550899 (-)
RNA-Seq ExpressionCsaV3_4G002530
SyntenyCsaV3_4G002530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAATCAAGAAAAGGAAGCCTCCGATCTCATTATGAGGACTAGAGCTGCACCATTTATACGAAGCAACAAAAGTACAGTAATAGCTGTTATGAAACAGTTGATGAAAAATGCATCGGCAGTTCAAAGATTCAAACTGAGGTTTATGCGACTGCCTCCTTCAGATTCTTTATTGGTAACTTTACAATTGACTCTCAATGTCTGCATTTATAACGCCCTTTGGACAATAAATACAGTTAACATGCTAATTTGTATATTCATGGATAGTATTATTATAGAACATGATGTAAATGAATAAAAGTTCTAATTATTCCTTTTCTCTCTCATATGTTTGAGAGGGTGAAAAATAGAAATCTAGAGTTCACTCCCACTTATAGAGAACTTGTCGAGCGTCTATGCAATGTACTTGCTGTAATCTAGAATTCAGAGAAGTATATTTCTTATTCATATTGAGTCAAAGGAAAGTTACATATTTATATAGAGAATAAAATAAATCATAGACACTATGTACAATGACAATAAAGGACATATAATATAAATATAAATATATATTTCATAACACTTGCTATTTGTTTTGTTTCCCAAACCTTTCAATGATGAATAAGGGATCGTTTGCGCTTGTTTAGATGATCATATGCCACAATTAATTTTCCTTCACTGCAGAAACCAATCCCTCTATTATGCCTTCTTGGTTCTTCAACCCCAAAATATAATGCGAGACTCTCTCCTTGATTGCTTTCTCCTTTCAACTTTAGATTCATCTTCAAGTGGTGGTCATCAAAGTCGTCCTTGATTCCACCACTCGGCTCTACAAAACTAATCTAGAAATCTAGCTGTTTGTCTATAGCCTATGGGCATCTCAGAACTATAGCAAACAAATCTTGAAAGCTTTTCTTATTTGCTTTAGTGTATAAATGCTGTGTTCTTAACGTATATAATGATAGAATTACATTCATGTGAATATTCCTCTGTTAATTATATTGCTTGTGAGCCCAAACCAATTTCTGGTAAAACATACATCTTTCACAGTGATTCTTTAGTTTTGATGCAATTACTCTTTTTAGATTCTAATTTCTAATAGACTCATTCTCTCTCGTTTTACCTCATTTTCGTGAGGTCAGTGCAGAGATTATGAAATGGGAAGAAAGAAATATCTTCGCTTTTGTCGTCAAGGAGCAATTGGAATTCATTGTACAGGCTTAAG

mRNA sequence

AGCTGCACCATTTATACGAAGCAACAAAAGTACAGTAATAGCTGTTATGAAACAGTTGATGAAAAATGCATCGGCAGTTCAAAGATTCAAACTGAGGTTTATGCGACTGCCTCCTTCAGATTCTTTATTGTGCAGAGATTATG

Coding sequence (CDS)

AGCTGCACCATTTATACGAAGCAACAAAAGTACAGTAATAGCTGTTATGAAACAGTTGATGAAAAATGCATCGGCAGTTCAAAGATTCAAACTGAGGTTTATGCGACTGCCTCCTTCAGATTCTTTATTGTGCAGAGATTATG

Protein sequence

SCTIYTKQQKYSNSCYETVDEKCIGSSKIQTEVYATASFRFFIVQRLX
Homology
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BLAST of CsaV3_4G002530 vs. NCBI nr
Match: KAE8649086.1 (hypothetical protein Csa_023805, partial [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  SCTIYTKQQKYSNSCYETVDEKCIGSSKIQTEVYATASFRFFIVQRL 48
          SCTIYTKQQKYSNSCYETVDEKCIGSSKIQTEVYATASFRFFIVQRL
Sbjct: 1  SCTIYTKQQKYSNSCYETVDEKCIGSSKIQTEVYATASFRFFIVQRL 47

The following BLAST results are available for this feature:
BLAST of CsaV3_4G002530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649086.13.5e-17100.00hypothetical protein Csa_023805, partial [Cucumis sativus][more]
BLAST of CsaV3_4G002530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G002530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G002530 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G002530.1CsaV3_4G002530.1mRNA