CsaV3_4G002090 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G002090
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ethylene-responsive transcription factor LEP-like
Location	chr4: 1235551 .. 1236306 (-)
RNA-Seq Expression	CsaV3_4G002090
Synteny	CsaV3_4G002090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAACAAGGCCTATAATATTATTATTCCTCTTCCCTTTTTTGTGTTAAGTTTGTTTATTCAAATTCCCCTATGGACTTCAAAACCTCCAAAACCAATTCCCCTTCTTCCTCCTCCTCTAAGCCAAGAAAATCAAAGCAACAAGACGGCCAACAACCTCTTCAGCAAGAACCCACTAGGTTTCTTGGTGTTAGAAGACGCCCATGGGGTAGATATGCTGCTGAAATTAGAGACCCTTCTACTAAAGAAAGACATTGGCTCGGCACCTTTGACACGGCTGAAGACGCTGCCTTAGCCTACGATCGAGCAGCTCGGTCCATGCGTGGCTCCAAGGCTCGCACCAACTTTGTCTACTCAGACATGCCTCATGGCTCCTCCGTTACTTCCATTATCTCTCCTGACGAATCTCAACTCTACCCTCCAACTCCTACTCAACCTAACCACCTCTGCTTCGACCCTTTCACCACGAGTTCATTCCCCGGTAACGACTGGTTGCCTGACTCTGACTCTTATCAACCCGTCACTGCCTTCATGGACAATGGCATTACGAACGATGATGCCGAACTCCCTCCGCTCCCGCCTGACGCATCTTCTTCCTACAATGACTGTGCTGCCATGGTTGATTGGTCTACTGCCTCCTCCTCTTCCACTTCCTCGTTTATGGGATTCAATTCCAATGCGGTTTTTCCGTCTTTCCCCGATACCAGTACTTCTGATGGCTTCGGATTCGGTTCCTCATCTACTTACTTCTATTGA

mRNA sequence

ATGGACTTCAAAACCTCCAAAACCAATTCCCCTTCTTCCTCCTCCTCTAAGCCAAGAAAATCAAAGCAACAAGACGGCCAACAACCTCTTCAGCAAGAACCCACTAGGTTTCTTGGTGTTAGAAGACGCCCATGGGGTAGATATGCTGCTGAAATTAGAGACCCTTCTACTAAAGAAAGACATTGGCTCGGCACCTTTGACACGGCTGAAGACGCTGCCTTAGCCTACGATCGAGCAGCTCGGTCCATGCGTGGCTCCAAGGCTCGCACCAACTTTGTCTACTCAGACATGCCTCATGGCTCCTCCGTTACTTCCATTATCTCTCCTGACGAATCTCAACTCTACCCTCCAACTCCTACTCAACCTAACCACCTCTGCTTCGACCCTTTCACCACGAGTTCATTCCCCGGTAACGACTGGTTGCCTGACTCTGACTCTTATCAACCCGTCACTGCCTTCATGGACAATGGCATTACGAACGATGATGCCGAACTCCCTCCGCTCCCGCCTGACGCATCTTCTTCCTACAATGACTGTGCTGCCATGGTTGATTGGTCTACTGCCTCCTCCTCTTCCACTTCCTCGTTTATGGGATTCAATTCCAATGCGGTTTTTCCGTCTTTCCCCGATACCAGTACTTCTGATGGCTTCGGATTCGGTTCCTCATCTACTTACTTCTATTGA

Coding sequence (CDS)

ATGGACTTCAAAACCTCCAAAACCAATTCCCCTTCTTCCTCCTCCTCTAAGCCAAGAAAATCAAAGCAACAAGACGGCCAACAACCTCTTCAGCAAGAACCCACTAGGTTTCTTGGTGTTAGAAGACGCCCATGGGGTAGATATGCTGCTGAAATTAGAGACCCTTCTACTAAAGAAAGACATTGGCTCGGCACCTTTGACACGGCTGAAGACGCTGCCTTAGCCTACGATCGAGCAGCTCGGTCCATGCGTGGCTCCAAGGCTCGCACCAACTTTGTCTACTCAGACATGCCTCATGGCTCCTCCGTTACTTCCATTATCTCTCCTGACGAATCTCAACTCTACCCTCCAACTCCTACTCAACCTAACCACCTCTGCTTCGACCCTTTCACCACGAGTTCATTCCCCGGTAACGACTGGTTGCCTGACTCTGACTCTTATCAACCCGTCACTGCCTTCATGGACAATGGCATTACGAACGATGATGCCGAACTCCCTCCGCTCCCGCCTGACGCATCTTCTTCCTACAATGACTGTGCTGCCATGGTTGATTGGTCTACTGCCTCCTCCTCTTCCACTTCCTCGTTTATGGGATTCAATTCCAATGCGGTTTTTCCGTCTTTCCCCGATACCAGTACTTCTGATGGCTTCGGATTCGGTTCCTCATCTACTTACTTCTATTGA

Protein sequence

MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPTQPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDCAAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY*

Homology

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BLAST of CsaV3_4G002090 vs. NCBI nr
Match: XP_004152327.1 (ethylene-responsive transcription factor LEP [Cucumis sativus] >KGN52951.1 hypothetical protein Csa_014961 [Cucumis sativus])

HSP 1 Score: 452.2 bits (1162), Expect = 2.6e-123
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120
           HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT
Sbjct: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120

Query: 121 QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDCA 180
           QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDCA
Sbjct: 121 QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDCA 180

Query: 181 AMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
           AMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY
Sbjct: 181 AMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 227

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BLAST of CsaV3_4G002090 vs. NCBI nr
Match: XP_008454160.1 (PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis melo])

HSP 1 Score: 410.6 bits (1054), Expect = 8.8e-111
Identity = 215/229 (93.89%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFK+SKTNSP SSSSKPRKSKQQD QQPL QEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKSSKTNSP-SSSSKPRKSKQQDHQQPLPQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120
           HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT
Sbjct: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120

Query: 121 -QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDC 180
            QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGIT+DDAELPPLPPDASSSYNDC
Sbjct: 121 SQPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITHDDAELPPLPPDASSSYNDC 180

Query: 181 -AAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
            AAMVDWSTASSS  SSFMGFNSNAVFP FPDTS+   FGFGSSSTYFY
Sbjct: 181 AAAMVDWSTASSS--SSFMGFNSNAVFPPFPDTSSDGSFGFGSSSTYFY 226

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BLAST of CsaV3_4G002090 vs. NCBI nr
Match: XP_038877958.1 (ethylene-responsive transcription factor LEP-like [Benincasa hispida])

HSP 1 Score: 370.5 bits (950), Expect = 1.0e-98
Identity = 200/239 (83.68%), Postives = 209/239 (87.45%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFK SKTN  S S SKPR+ KQQD QQP QQEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKNSKTNH-SPSPSKPRR-KQQD-QQPHQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120
           HWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT
Sbjct: 61  HWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120

Query: 121 --------QPNHLCF----DPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPL 180
                   QPNHLCF    DPF+TSSFPGNDWLPD++SYQPVTAFMD GI +DDAELPPL
Sbjct: 121 PTSLTPLSQPNHLCFTLHDDPFSTSSFPGNDWLPDTNSYQPVTAFMDTGIPHDDAELPPL 180

Query: 181 PPDASSSYNDCAAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
           PPDASSSYNDCA M+DWSTAS SS+SSFM F+SNAV P FPDTST D FGFGSSS YFY
Sbjct: 181 PPDASSSYNDCATMIDWSTASPSSSSSFMAFDSNAVLPPFPDTST-DAFGFGSSSPYFY 235

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BLAST of CsaV3_4G002090 vs. NCBI nr
Match: KAG6581971.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.7 bits (896), Expect = 1.8e-92
Identity = 186/240 (77.50%), Postives = 199/240 (82.92%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFK S TNSP  S SKPR+  Q     P  QEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKNSNTNSP--SPSKPRRKHQDQHPHPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTP- 120
           HWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQL+PPTP 
Sbjct: 61  HWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPT 120

Query: 121 --------TQPNHLCF----DPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPP 180
                   TQPNHLCF    DPFT +SFPGNDWLPD+DSYQPVTAFMD GI + DAELPP
Sbjct: 121 PTPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDTDSYQPVTAFMDTGIPHHDAELPP 180

Query: 181 LPPDASSSYNDCAAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
           LPPDASSSYNDCA M+DW   SSSS+SSF+GF+SNA  P FPDT+T D FGFGSSS YFY
Sbjct: 181 LPPDASSSYNDCATMIDW---SSSSSSSFIGFDSNAPLPPFPDTNT-DTFGFGSSSNYFY 234

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BLAST of CsaV3_4G002090 vs. NCBI nr
Match: XP_022980062.1 (ethylene-responsive transcription factor LEP-like [Cucurbita maxima])

HSP 1 Score: 347.8 bits (891), Expect = 7.0e-92
Identity = 185/240 (77.08%), Postives = 197/240 (82.08%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFK S TNSP  S SKPR+       QP  QEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKNSNTNSP--SPSKPRRKHHDQHPQPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTP- 120
           HWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQL+PPTP 
Sbjct: 61  HWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPT 120

Query: 121 --------TQPNHLCF----DPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPP 180
                   TQPNHLCF    DPFT +SFPGNDWLPDSDSYQPVTAFMD GI + D ELPP
Sbjct: 121 PTPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDSDSYQPVTAFMDTGIPHHDTELPP 180

Query: 181 LPPDASSSYNDCAAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
           LPPDASSSY DCA M+DW   SSSS+SSF+GF+SNA  P FPDT+T D FGFGSSS YFY
Sbjct: 181 LPPDASSSYTDCATMIDW---SSSSSSSFIGFDSNAPLPPFPDTNT-DSFGFGSSSNYFY 234

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BLAST of CsaV3_4G002090 vs. ExPASy Swiss-Prot
Match: Q9M644 (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=LEP PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 108/220 (49.09%), Postives = 130/220 (59.09%), Query Frame = 0


Query: 13  SSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 72
           +++S   K KQ D      Q  TRFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+A
Sbjct: 2   NTTSSKSKKKQDD------QVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEA 61

Query: 73  ALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPTQPNHLCFDPFTT 132
           ALAYDRAARSMRG++ARTNFVYSDMP  SSVTSI+SPD+    PP P  P++   DP   
Sbjct: 62  ALAYDRAARSMRGTRARTNFVYSDMPPSSSVTSIVSPDDPPPPPPPPAPPSN---DPVDY 121

Query: 133 SSFPGNDWLPDSDSYQP----VTAFMDNG--------ITNDDA-ELPPLPPDASSSYNDC 192
                     DS   QP    V ++M  G         +ND + ELPPLP D S   N C
Sbjct: 122 MMMFNQYSSTDSPMLQPHCDQVDSYMFGGSQSSNSYCYSNDSSNELPPLPSDLS---NSC 181

Query: 193 AAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGF 220
            +   W+      +S ++    + +F   P  S S   GF
Sbjct: 182 YSQPQWTWTGDDYSSEYV---HSPMFSRMPPVSDSFPQGF 206

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BLAST of CsaV3_4G002090 vs. ExPASy Swiss-Prot
Match: Q9FZ90 (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 GN=ERF087 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-32
Identity = 109/251 (43.43%), Postives = 139/251 (55.38%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQ--EPTRFLGVRRRPWGRYAAEIRDPSTK 60
           M+F  +      S S K  + KQQ  Q   QQ  E  +++GVRRRPWGRYAAEIR+P+TK
Sbjct: 1   MEFNGNLNAGSCSRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTK 60

Query: 61  ERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLY--- 120
           ER+WLGTFDTAE+AALAYDRAARS+RG  ARTNFVYSDMP GSSVTS +SPDESQ +   
Sbjct: 61  ERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYSDMPRGSSVTSFVSPDESQRFISE 120

Query: 121 ---PPT---PTQPNHLCFDPFTTSS---------FPGNDWLPDSD-SYQPVTAFMDNGIT 180
              PP+    T  N+   +   +S+         F  N W  +++  YQ +T    +   
Sbjct: 121 LFNPPSQLEATNSNNNNNNNLYSSTNNQNQNSIEFSYNGWPQEAECGYQSIT----SNAE 180

Query: 181 NDDAELPPLPPDASSSYNDCAAMVD--WSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGF 228
           + D ELPPLPP             D  W+ A +S  +     +      S   + T    
Sbjct: 181 HCDHELPPLPPSTCFGAELRIPETDSYWNVAHASIDTFAFELDGFVDQNSLGQSGTE--- 240

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BLAST of CsaV3_4G002090 vs. ExPASy Swiss-Prot
Match: Q6J9Q2 (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana OX=3702 GN=ERF086 PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-25
Identity = 62/101 (61.39%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 3   FKTSKT--------NSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRD 62
           F+TS+T         + S++++    + ++ G++  Q EP RFLGVRRRPWGRYAAEIRD
Sbjct: 13  FETSQTQMGFALIHQNTSANTTTTTTTGERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRD 72

Query: 63  PSTKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS 96
           P+TKERHWLGTFDTA +AALAYDRAA SMRG++ARTNFVY+
Sbjct: 73  PTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYT 113

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BLAST of CsaV3_4G002090 vs. ExPASy Swiss-Prot
Match: Q8H3Q1 (Ethylene-responsive transcription factor FZP OS=Oryza sativa subsp. japonica OX=39947 GN=FZP PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-25
Identity = 61/90 (67.78%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 7   KTNSPSSSSSKPRKSKQQDGQQPLQ-QEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGT 66
           K  S  S  S P   +   G+   + QEP RFLGVRRRPWGRYAAEIRDP+TKERHWLGT
Sbjct: 27  KPASQPSPPSSPMSERPPSGRSRRRAQEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGT 86

Query: 67  FDTAEDAALAYDRAARSMRGSKARTNFVYS 96
           FDTA++AALAYDRAA SM+G++ARTNFVY+
Sbjct: 87  FDTAQEAALAYDRAALSMKGAQARTNFVYT 116

[Close]

BLAST of CsaV3_4G002090 vs. ExPASy Swiss-Prot
Match: Q3E703 (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana OX=3702 GN=ERF088 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-21
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 15  SSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAL 74
           SS  RKSK+   ++ LQ+   ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAE+AA 
Sbjct: 4   SSNKRKSKE---EKKLQE--GKYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAF 63

Query: 75  AYDRAARSMRGSKARTNFVYSD------------MPHGSSVTSIISPDESQLYPPTPTQP 134
           AYD AARS+ GS A TNF Y++             PH +  +S +      L    P + 
Sbjct: 64  AYDVAARSISGSLATTNFFYTENTSLERHPQQSLEPHMTWGSSSLC-----LLQDQPFEN 123

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BLAST of CsaV3_4G002090 vs. ExPASy TrEMBL
Match: A0A0A0KYM7 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G007070 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.3e-123
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120
           HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT
Sbjct: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120

Query: 121 QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDCA 180
           QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDCA
Sbjct: 121 QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDCA 180

Query: 181 AMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
           AMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY
Sbjct: 181 AMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 227

[Close]

BLAST of CsaV3_4G002090 vs. ExPASy TrEMBL
Match: A0A1S3BXG1 (ethylene-responsive transcription factor LEP-like OS=Cucumis melo OX=3656 GN=LOC103494646 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.3e-111
Identity = 215/229 (93.89%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFK+SKTNSP SSSSKPRKSKQQD QQPL QEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKSSKTNSP-SSSSKPRKSKQQDHQQPLPQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120
           HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT
Sbjct: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT 120

Query: 121 -QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPLPPDASSSYNDC 180
            QPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGIT+DDAELPPLPPDASSSYNDC
Sbjct: 121 SQPNHLCFDPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITHDDAELPPLPPDASSSYNDC 180

Query: 181 -AAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
            AAMVDWSTASSS  SSFMGFNSNAVFP FPDTS+   FGFGSSSTYFY
Sbjct: 181 AAAMVDWSTASSS--SSFMGFNSNAVFPPFPDTSSDGSFGFGSSSTYFY 226

[Close]

BLAST of CsaV3_4G002090 vs. ExPASy TrEMBL
Match: A0A6J1IQE0 (ethylene-responsive transcription factor LEP-like OS=Cucurbita maxima OX=3661 GN=LOC111479578 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 3.4e-92
Identity = 185/240 (77.08%), Postives = 197/240 (82.08%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFK S TNSP  S SKPR+       QP  QEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKNSNTNSP--SPSKPRRKHHDQHPQPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTP- 120
           HWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQL+PPTP 
Sbjct: 61  HWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPT 120

Query: 121 --------TQPNHLCF----DPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPP 180
                   TQPNHLCF    DPFT +SFPGNDWLPDSDSYQPVTAFMD GI + D ELPP
Sbjct: 121 PTPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDSDSYQPVTAFMDTGIPHHDTELPP 180

Query: 181 LPPDASSSYNDCAAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
           LPPDASSSY DCA M+DW   SSSS+SSF+GF+SNA  P FPDT+T D FGFGSSS YFY
Sbjct: 181 LPPDASSSYTDCATMIDW---SSSSSSSFIGFDSNAPLPPFPDTNT-DSFGFGSSSNYFY 234

[Close]

BLAST of CsaV3_4G002090 vs. ExPASy TrEMBL
Match: A0A6J1GVK2 (ethylene-responsive transcription factor LEP-like OS=Cucurbita moschata OX=3662 GN=LOC111457873 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.4e-90
Identity = 182/240 (75.83%), Postives = 196/240 (81.67%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFK S TNSP  S SKPR+        P  QEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKNSNTNSP--SPSKPRRKHHDQHPHPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTP- 120
           HWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQL+PPTP 
Sbjct: 61  HWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPT 120

Query: 121 --------TQPNHLCF----DPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPP 180
                   TQPNHLCF    DPFT +SFPGNDWLPD+DSYQPVTAFMD GI + DAELPP
Sbjct: 121 PTPTSHPQTQPNHLCFTLHDDPFTATSFPGNDWLPDTDSYQPVTAFMDTGIPHHDAELPP 180

Query: 181 LPPDASSSYNDCAAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 228
           LPPDASSSYNDCA M+DW   SSSS+SSF+GF+SNA  P FPD + +D FGF SSS YFY
Sbjct: 181 LPPDASSSYNDCATMIDW---SSSSSSSFIGFDSNAPLPPFPD-ANNDAFGFDSSSNYFY 234

[Close]

BLAST of CsaV3_4G002090 vs. ExPASy TrEMBL
Match: A0A6J1DVR8 (ethylene-responsive transcription factor LEP-like OS=Momordica charantia OX=3673 GN=LOC111024899 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.8e-69
Identity = 168/248 (67.74%), Postives = 185/248 (74.60%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDF  SKTNS +S+SSKPR+ KQQ+ QQ  QQE TRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFTDSKTNS-TSTSSKPRR-KQQEQQQ--QQETTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDES-QLYP--- 120
           HWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMPHGSS+TSIISPDES   +P   
Sbjct: 61  HWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSITSIISPDESADAFPPPI 120

Query: 121 PTPTQPNHLCF---DPFTTSSFPGNDWLPDSD---------SYQPVTAFMDNGITN-DDA 180
           PTPTQ + L F   DPF TS FPGN+WL +SD         +YQPVTAFMD G+   D  
Sbjct: 121 PTPTQNDQLSFALHDPFATSPFPGNNWLSNSDFDHDVDLPSNYQPVTAFMDTGMPQADST 180

Query: 181 ELPPLPPDASSSYNDCAAMVDWSTASSSSTSSFMGFNSN-AVFPSFPDTSTSDGFGF--- 228
           ELPPLPPDASSSYN+ A               FM ++SN AV P FPDT  +DG+GF   
Sbjct: 181 ELPPLPPDASSSYNEYA---------------FMSYDSNAAVLPPFPDT-PADGYGFGFG 228

[Close]

BLAST of CsaV3_4G002090 vs. TAIR 10
Match: AT5G13910.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39
Identity = 108/220 (49.09%), Postives = 130/220 (59.09%), Query Frame = 0


Query: 13  SSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDA 72
           +++S   K KQ D      Q  TRFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAE+A
Sbjct: 2   NTTSSKSKKKQDD------QVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEA 61

Query: 73  ALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPTQPNHLCFDPFTT 132
           ALAYDRAARSMRG++ARTNFVYSDMP  SSVTSI+SPD+    PP P  P++   DP   
Sbjct: 62  ALAYDRAARSMRGTRARTNFVYSDMPPSSSVTSIVSPDDPPPPPPPPAPPSN---DPVDY 121

Query: 133 SSFPGNDWLPDSDSYQP----VTAFMDNG--------ITNDDA-ELPPLPPDASSSYNDC 192
                     DS   QP    V ++M  G         +ND + ELPPLP D S   N C
Sbjct: 122 MMMFNQYSSTDSPMLQPHCDQVDSYMFGGSQSSNSYCYSNDSSNELPPLPSDLS---NSC 181

Query: 193 AAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGF 220
            +   W+      +S ++    + +F   P  S S   GF
Sbjct: 182 YSQPQWTWTGDDYSSEYV---HSPMFSRMPPVSDSFPQGF 206

[Close]

BLAST of CsaV3_4G002090 vs. TAIR 10
Match: AT1G28160.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-33
Identity = 109/251 (43.43%), Postives = 139/251 (55.38%), Query Frame = 0


Query: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQ--EPTRFLGVRRRPWGRYAAEIRDPSTK 60
           M+F  +      S S K  + KQQ  Q   QQ  E  +++GVRRRPWGRYAAEIR+P+TK
Sbjct: 1   MEFNGNLNAGSCSRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTK 60

Query: 61  ERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLY--- 120
           ER+WLGTFDTAE+AALAYDRAARS+RG  ARTNFVYSDMP GSSVTS +SPDESQ +   
Sbjct: 61  ERYWLGTFDTAEEAALAYDRAARSIRGLTARTNFVYSDMPRGSSVTSFVSPDESQRFISE 120

Query: 121 ---PPT---PTQPNHLCFDPFTTSS---------FPGNDWLPDSD-SYQPVTAFMDNGIT 180
              PP+    T  N+   +   +S+         F  N W  +++  YQ +T    +   
Sbjct: 121 LFNPPSQLEATNSNNNNNNNLYSSTNNQNQNSIEFSYNGWPQEAECGYQSIT----SNAE 180

Query: 181 NDDAELPPLPPDASSSYNDCAAMVD--WSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGF 228
           + D ELPPLPP             D  W+ A +S  +     +      S   + T    
Sbjct: 181 HCDHELPPLPPSTCFGAELRIPETDSYWNVAHASIDTFAFELDGFVDQNSLGQSGTE--- 240

[Close]

BLAST of CsaV3_4G002090 vs. TAIR 10
Match: AT5G18560.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-26
Identity = 62/101 (61.39%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 3   FKTSKT--------NSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRD 62
           F+TS+T         + S++++    + ++ G++  Q EP RFLGVRRRPWGRYAAEIRD
Sbjct: 13  FETSQTQMGFALIHQNTSANTTTTTTTGERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRD 72

Query: 63  PSTKERHWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYS 96
           P+TKERHWLGTFDTA +AALAYDRAA SMRG++ARTNFVY+
Sbjct: 73  PTTKERHWLGTFDTAHEAALAYDRAALSMRGTQARTNFVYT 113

[Close]

BLAST of CsaV3_4G002090 vs. TAIR 10
Match: AT1G12890.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-22
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 15  SSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEDAAL 74
           SS  RKSK+   ++ LQ+   ++LGVRRRPWGRYAAEIR+P TKERHWLGTFDTAE+AA 
Sbjct: 4   SSNKRKSKE---EKKLQE--GKYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAF 63

Query: 75  AYDRAARSMRGSKARTNFVYSD------------MPHGSSVTSIISPDESQLYPPTPTQP 134
           AYD AARS+ GS A TNF Y++             PH +  +S +      L    P + 
Sbjct: 64  AYDVAARSISGSLATTNFFYTENTSLERHPQQSLEPHMTWGSSSLC-----LLQDQPFEN 123

[Close]

BLAST of CsaV3_4G002090 vs. TAIR 10
Match: AT1G12980.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-21
Identity = 60/124 (48.39%), Postives = 71/124 (57.26%), Query Frame = 0


Query: 3   FKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHW 62
           F T  T SP S + K                 TR+ GVRRRPWGRYAAEIRDP +KER W
Sbjct: 23  FFTEPTASPVSRNRKLSSKDTTVTIAGAGSSTTRYRGVRRRPWGRYAAEIRDPMSKERRW 82

Query: 63  LGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPTQP 122
           LGTFDTAE AA AYD AAR+ RG+KARTNF Y         T++I P+    +    + P
Sbjct: 83  LGTFDTAEQAACAYDSAARAFRGAKARTNFTYP--------TAVIMPEPRFSFSNKKSSP 138

Query: 123 NHLC 127
           +  C
Sbjct: 143 SARC 138

The following BLAST results are available for this feature:

BLAST of CsaV3_4G002090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152327.1	2.6e-123	100.00	ethylene-responsive transcription factor LEP [Cucumis sativus] >KGN52951.1 hypot...	[more]
XP_008454160.1	8.8e-111	93.89	PREDICTED: ethylene-responsive transcription factor LEP-like [Cucumis melo]	[more]
XP_038877958.1	1.0e-98	83.68	ethylene-responsive transcription factor LEP-like [Benincasa hispida]	[more]
KAG6581971.1	1.8e-92	77.50	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022980062.1	7.0e-92	77.08	ethylene-responsive transcription factor LEP-like [Cucurbita maxima]	[more]

BLAST of CsaV3_4G002090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M644	2.1e-38	49.09	Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FZ90	2.2e-32	43.43	Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6J9Q2	2.6e-25	61.39	Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8H3Q1	4.5e-25	67.78	Ethylene-responsive transcription factor FZP OS=Oryza sativa subsp. japonica OX=...	[more]
Q3E703	3.9e-21	49.62	Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsaV3_4G002090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYM7	1.3e-123	100.00	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G007070 PE=...	[more]
A0A1S3BXG1	4.3e-111	93.89	ethylene-responsive transcription factor LEP-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1IQE0	3.4e-92	77.08	ethylene-responsive transcription factor LEP-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1GVK2	1.4e-90	75.83	ethylene-responsive transcription factor LEP-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1DVR8	1.8e-69	67.74	ethylene-responsive transcription factor LEP-like OS=Momordica charantia OX=3673...	[more]

BLAST of CsaV3_4G002090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13910.1	1.5e-39	49.09	Integrase-type DNA-binding superfamily protein	[more]
AT1G28160.1	1.6e-33	43.43	Integrase-type DNA-binding superfamily protein	[more]
AT5G18560.1	1.9e-26	61.39	Integrase-type DNA-binding superfamily protein	[more]
AT1G12890.1	2.8e-22	49.62	Integrase-type DNA-binding superfamily protein	[more]
AT1G12980.1	4.0e-21	48.39	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 59..75 score: 66.74 coord: 37..48 score: 53.33
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 36..99 e-value: 1.0E-34 score: 131.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 37..85 e-value: 7.7E-13 score: 48.5
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 36..93 score: 20.534075
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 35..92 e-value: 5.13902E-31 score: 106.972
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 35..94 e-value: 1.9E-25 score: 90.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR31677	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 2..227
None	No IPR available	PANTHER	PTHR31677:SF63	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP-LIKE	coord: 2..227
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 37..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G002090.1	CsaV3_4G002090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity