CsaV3_4G000410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G000410
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 246741 .. 247035 (-)
RNA-Seq ExpressionCsaV3_4G000410
SyntenyCsaV3_4G000410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCAAAACTTCAGCAAACAGCAGAATCCCCAATGAAGAACCATAGAGAAATGAGAAAAGAGGATTTGAAAGAAGGTTGTGGGGGAATCTTCAGAGAAAAACCAAAGGAAAAGCTTAGTAAGAGAGAAAGAAGAGGAAATGGGGAGAGGGGTTAATGAAATTTTTAAAGAAGGGAGAAAAGAAAAGAGATTGGTCTTAAATGGGAAGAGGGTTTAAGAGAAAGTGGCTGTTTCCTTGGTCGGCGGCAAAGCCCACGGAGCCCGGGTCAGCAAGTCAGCTGTGGAGACATAG

mRNA sequence

ATGAGCTCAAAACTTCAGCAAACAGCAGAATCCCCAATGAAGAACCATAGAGAAATGAGAAAAGAGGATTTGAAAGAAGGTTGTGGGGGAATCTTCAGAGAAAAACCAAAGGAAAAGCTTAAGAAAGTGGCTGTTTCCTTGGTCGGCGGCAAAGCCCACGGAGCCCGGGTCAGCAAGTCAGCTGTGGAGACATAG

Coding sequence (CDS)

ATGAGCTCAAAACTTCAGCAAACAGCAGAATCCCCAATGAAGAACCATAGAGAAATGAGAAAAGAGGATTTGAAAGAAGGTTGTGGGGGAATCTTCAGAGAAAAACCAAAGGAAAAGCTTAAGAAAGTGGCTGTTTCCTTGGTCGGCGGCAAAGCCCACGGAGCCCGGGTCAGCAAGTCAGCTGTGGAGACATAG

Protein sequence

MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKSAVET*
Homology
[Close]
BLAST of CsaV3_4G000410 vs. NCBI nr
Match: KGN52772.1 (hypothetical protein Csa_015208 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 6.1e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS 60
          MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS
Sbjct: 1  MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS 60

Query: 61 AVET 65
          AVET
Sbjct: 61 AVET 64

[Close]
BLAST of CsaV3_4G000410 vs. ExPASy TrEMBL
Match: A0A0A0KWF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000920 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS 60
          MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS
Sbjct: 1  MSSKLQQTAESPMKNHREMRKEDLKEGCGGIFREKPKEKLKKVAVSLVGGKAHGARVSKS 60

Query: 61 AVET 65
          AVET
Sbjct: 61 AVET 64

The following BLAST results are available for this feature:
BLAST of CsaV3_4G000410 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52772.16.1e-25100.00hypothetical protein Csa_015208 [Cucumis sativus][more]
BLAST of CsaV3_4G000410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWF53.0e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000920 PE=4 SV=1[more]
BLAST of CsaV3_4G000410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G000410.1CsaV3_4G000410.1mRNA