CsaV3_4G000260 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G000260
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 179037 .. 179631 (+)
RNA-Seq ExpressionCsaV3_4G000260
SyntenyCsaV3_4G000260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTTCTCCATCTAAATATAATTAGCTGCTGTAGATTCACAGAGTATTTGCGGCTGGGATTCGAGGCTAAAGTTCGTGGCTGGGATTTCACTGGAATTGCAGTTGGGATTCGAGGCAGGAGGTTGCTGGAGTTCGCGGCGCGGTTGTTTCTTCACGGCAGGAGGTCGCCAGCAGAGGTCTTCAAGGCAGGAGGGTGCTTGCGACGGCGGCGAGTATACAGTTCACAGAATATTGGTAGGAGGTTGCTGGAGTTCGCGGCGCGGTTGTTTCTTCACGGCAGGAGGTCGTCAGCAGGTGAGTTACTTCACGGTGAGATGTTGTCTTCACGGCAGGAGGCTGCGGCAAGGTGTCGTGAAGTGTCTTCACGGCAGAAGGCTGCGGCAAGGACCGAGGGGAGATCTGGCGCCTGGCGTTCGTGGAGCGTTTTCACGGCAGAGGGTTGCGGCAGGGAGATTGACCGAGGGGAGATCTGGCGTTCGCGGAAGCGTCTTCACGGCAGGGCTTCACGGCAAGGTGTTCGCGGAAGTGTCTTTACGGCAGGGCTTCACGGCAAGGTGTTCGCGGAAGTGTCTTCACGGCAGGGCTTCACGGCAAG

mRNA sequence

TTTCTCCATCTAAATATAATTAGCTGCTGTAGATTCACAGAGTATTTGCGGCTGGGATTCGAGGCTAAAGTTCGTGGCTGGGATTTCACTGGAATTGCAGTTGGGATTCGAGGCAGGAGGTTGCTGGAGTTCGCGGCGCGGTTGTTTCTTCACGGCAGGAGGTCGCCAGCAGAGGTCTTCAAGGCAGGAGGGTGCTTGCGACGGCGGCGAGTATACAGTTCACAGAATATTGGTAGGAGGTTGCTGGAGTTCGCGGCGCGGTTGTTTCTTCACGGCAGGAGGTCGTCAGCAGGTGAGTTACTTCACGGTGAGATGTTGTCTTCACGGCAGGAGGCTGCGGCAAGGTGTCGTGAAGTGTCTTCACGGCAGAAGGCTGCGGCAAGGACCGAGGGGAGATCTGGCGCCTGGCGTTCGTGGAGCGTTTTCACGGCAGAGGGTTGCGGCAGGGAGATTGACCGAGGGGAGATCTGGCGTTCGCGGAAGCGTCTTCACGGCAGGGCTTCACGGCAAGGTGTTCGCGGAAGTGTCTTTACGGCAGGGCTTCACGGCAAGGTGTTCGCGGAAGTGTCTTCACGGCAGGGCTTCACGGCAAG

Coding sequence (CDS)

TTTCTCCATCTAAATATAATTAGCTGCTGTAGATTCACAGAGTATTTGCGGCTGGGATTCGAGGCTAAAGTTCGTGGCTGGGATTTCACTGGAATTGCAGTTGGGATTCGAGGCAGGAGGTTGCTGGAGTTCGCGGCGCGGTTGTTTCTTCACGGCAGGAGGTCGCCAGCAGAGGTCTTCAAGGCAGGAGGGTGCTTGCGACGGCGGCGAGTATACAGTTCACAGAATATTGGTAGGAGGTTGCTGGAGTTCGCGGCGCGGTTGTTTCTTCACGGCAGGAGGTCGTCAGCAGGTGAGTTACTTCACGGTGAGATGTTGTCTTCACGGCAGGAGGCTGCGGCAAGGTGTCGTGAAGTGTCTTCACGGCAGAAGGCTGCGGCAAGGACCGAGGGGAGATCTGGCGCCTGGCGTTCGTGGAGCGTTTTCACGGCAGAGGGTTGCGGCAGGGAGATTGACCGAGGGGAGATCTGGCGTTCGCGGAAGCGTCTTCACGGCAGGGCTTCACGGCAAGGTGTTCGCGGAAGTGTCTTTACGGCAGGGCTTCACGGCAAGGTGTTCGCGGAAGTGTCTTCACGGCAGGGCTTCACGGCAAG

Protein sequence

FLHLNIISCCRFTEYLRLGFEAKVRGWDFTGIAVGIRGRRLLEFAARLFLHGRRSPAEVFKAGGCLRRRRVYSSQNIGRRLLEFAARLFLHGRRSSAGELLHGEMLSSRQEAAARCREVSSRQKAAARTEGRSGAWRSWSVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVRGSVFTAGLHGKVFAEVSSRQGFTAX
Homology
[Close]
BLAST of CsaV3_4G000260 vs. NCBI nr
Match: KAE8649029.1 (hypothetical protein Csa_014574, partial [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 1.8e-104
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   FLHLNIISCCRFTEYLRLGFEAKVRGWDFTGIAVGIRGRRLLEFAARLFLHGRRSPAEVF 60
           FLHLNIISCCRFTEYLRLGFEAKVRGWDFTGIAVGIRGRRLLEFAARLFLHGRRSPAEVF
Sbjct: 1   FLHLNIISCCRFTEYLRLGFEAKVRGWDFTGIAVGIRGRRLLEFAARLFLHGRRSPAEVF 60

Query: 61  KAGGCLRRRRVYSSQNIGRRLLEFAARLFLHGRRSSAGELLHGEMLSSRQEAAARCREVS 120
           KAGGCLRRRRVYSSQNIGRRLLEFAARLFLHGRRSSAGELLHGEMLSSRQEAAARCREVS
Sbjct: 61  KAGGCLRRRRVYSSQNIGRRLLEFAARLFLHGRRSSAGELLHGEMLSSRQEAAARCREVS 120

Query: 121 SRQKAAARTEGRSGAWRSWSVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVRGSVFTAG 180
           SRQKAAARTEGRSGAWRSWSVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVRGSVFTAG
Sbjct: 121 SRQKAAARTEGRSGAWRSWSVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVRGSVFTAG 180

Query: 181 LHGKVFAEVSSRQGFTA 198
           LHGKVFAEVSSRQGFTA
Sbjct: 181 LHGKVFAEVSSRQGFTA 197

[Close]
BLAST of CsaV3_4G000260 vs. NCBI nr
Match: KAE8652607.1 (hypothetical protein Csa_014320 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-23
Identity = 90/185 (48.65%), Postives = 95/185 (51.35%), Query Frame = 0 

Query: 16  LRLGFEAKVRGWDFTGIAVGIRGRRLLEFAARLFLHGRRSPAEVFKAGGCLRRRRVYSSQ 75
           L+LGFEA        G      GR+           G         AGGC   RR     
Sbjct: 78  LQLGFEAGGCWSSRRGCFFTAGGRQQRSSRQEGACDGGEYTVHRILAGGCWSSRRGCFFT 137

Query: 76  NIGRRLLE-FAARLFLHGRRSSAG--ELLHGEMLSSRQEAAARCREVSSRQKAAARTEGR 135
             GR+ +  F  R  LHGRR   G  + LHG  L  RQ           R   A    G 
Sbjct: 138 AGGRQQVSYFTVRCCLHGRRLRQGVVKCLHGRRL--RQ---------GPRGDLAPGVRG- 197

Query: 136 SGAWRSWSVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVRGSVFTAGLHGKVFAEVSSR 195
                  SVFTAEGCGREIDRGEIWRSRKRLHGRASRQGV GSVFTAGLHGK FAE SSR
Sbjct: 198 -------SVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVCGSVFTAGLHGKAFAEASSR 243

Query: 196 QGFTA 198
           QGFTA
Sbjct: 258 QGFTA 243

[Close]
BLAST of CsaV3_4G000260 vs. NCBI nr
Match: KAE8645686.1 (hypothetical protein Csa_023943, partial [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-16
Identity = 56/76 (73.68%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 98  GELLHGEMLSSRQEAAARCREVSSRQKAAA--RTEGRSGAWRSWSVFTAEGCGREIDRGE 157
           GE LHGE++SS+QEAA R RE SSRQ+ AA   TEGRSG     SVFTA GCGREIDRGE
Sbjct: 5   GERLHGEVMSSKQEAATRSREASSRQEVAAGRLTEGRSGV--RGSVFTAGGCGREIDRGE 64

Query: 158 IWRSRKRLHGRASRQG 172
           IWRSRKRLHGR  RQG
Sbjct: 65  IWRSRKRLHGRRLRQG 78

[Close]
BLAST of CsaV3_4G000260 vs. NCBI nr
Match: KAE8649548.1 (hypothetical protein Csa_018012 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-15
Identity = 80/182 (43.96%), Postives = 86/182 (47.25%), Query Frame = 0 

Query: 16  LRLGFEAKVRGWDFTGIAVGIRGRRLLEFAARLFLHGRRSPAEVFKAGGCLRRRRVYSSQ 75
           L+LGFEA        G      GR+           G         AGGC   RR     
Sbjct: 23  LQLGFEAGGCWSSRRGCFFTAGGRQQRSSRQEGACDGGEYTVHRILAGGCWSSRRGCFFT 82

Query: 76  NIGRRLLE-FAARLFLHGRRSSAG--ELLHGEMLSSRQEAAARCREVSSRQKAAARTEGR 135
             GR+ +  F  R  LHGRR   G  + LHG  L  RQ           R   A    G 
Sbjct: 83  AGGRQQVSYFTVRCCLHGRRLRQGVVKCLHGRRL--RQ---------GPRGDLAPGVRG- 142

Query: 136 SGAWRSWSVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVRGSVFTAGLHGKVFAEVSSR 195
                  SVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVRGSVFTA    K     +SR
Sbjct: 143 -------SVFTAEGCGREIDRGEIWRSRKRLHGRASRQGVRGSVFTARRSRKRLHGRASR 185

[Close]
BLAST of CsaV3_4G000260 vs. NCBI nr
Match: KAE8653012.1 (hypothetical protein Csa_023560, partial [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-15
Identity = 55/79 (69.62%), Postives = 60/79 (75.95%), Query Frame = 0 

Query: 95  SSAGELLHGEMLSSRQEAAARCREVSSRQKAAA--RTEGRSGAWRSWSVFTAEGCGREID 154
           S AGE LH +++SSRQEAAAR RE SSRQ+ AA   TEGRS      SVFTA GC REID
Sbjct: 2   SPAGERLHDKVMSSRQEAAARSREASSRQEVAAGRLTEGRSSV--RGSVFTAGGCDREID 61

Query: 155 RGEIWRSRKRLHGRASRQG 172
           RGEIWRSRKRLHGR  +QG
Sbjct: 62  RGEIWRSRKRLHGRRLQQG 78

The following BLAST results are available for this feature:
BLAST of CsaV3_4G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649029.11.8e-104100.00hypothetical protein Csa_014574, partial [Cucumis sativus][more]
KAE8652607.13.5e-2348.65hypothetical protein Csa_014320 [Cucumis sativus][more]
KAE8645686.11.9e-1673.68hypothetical protein Csa_023943, partial [Cucumis sativus][more]
KAE8649548.11.2e-1543.96hypothetical protein Csa_018012 [Cucumis sativus][more]
KAE8653012.17.9e-1569.62hypothetical protein Csa_023560, partial [Cucumis sativus][more]
BLAST of CsaV3_4G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G000260.1CsaV3_4G000260.1mRNA