CsaV3_4G000050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G000050
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTubulin alpha chain
Locationchr4: 53299 .. 57581 (+)
RNA-Seq ExpressionCsaV3_4G000050
SyntenyCsaV3_4G000050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTCGGAGGAGTTTGCGTTATGCCTGCGTTTATAGAAGGTTCACTTTCCGTTGCGCTGCTAAAGATACTGATAAGGAAACCAATGGCAAGTTTTAACTGCTTTTCTTCTGCTTCGTTTCTACCGGTTTTCTTTTTCCATTGCACCTGCTTTGCTTGTATTTTCTTTGGTGATTGACTGTTCGTTTTTTCGTTGTTTTTGTTTTGCTAAACTACGAAGTTGCATGATGTAGTTTGTTGTTCAGATGCTCCGTCGCTTCTGAATTATCTCGCTCAGTTGAAAGTAGCTCAATCATGTAGCAAAATCGTGCGAGTATTCATCAAGCTATTTGAGTAAATGAGGAGTGGAAGATAGTTGAGGCTATGAATAAAGGTTGCTTCGTTGGCACTCTAATTCTCATTAGAGCTTTATTCTTGAATCAATATAGACACGATTCGATAGATGGATTAAACCGGAATCTGAAATTTTAAACTAAGAATTTTTTTACGTTCAACGATTTTTTAAAAAACTTAAGAGATGGCGAATCTAAGAGTTTTGTTAATCAGACAGAGGAAGCTTGGTAAACGGATGAAATTTTCATTTCGATCAATGTCTGTATTAACCATCACTTGATTCTATAATCCGAAGTCTTCCTTGGTTCAATTTTTGTAGTCAAAGCTTTTAGGAAGCTTCAAGTATGTGTCGAGCCGACAGTTGTAGTACCGTACTTGTATTAGGAGTCGTAGCTGGCGATGCTTGTTTAGATTGCTTGAACAGTTTTCGCATAGGTTCAGTTTTTCTTTTAAGAAGTGTTTCGGACATTTGAGTTTTCTTCAGCTTGTGTAACAGCGGCATGGTTTGCTTGGCCCTCCTGTGTGGAGGCTCATGAGGCCTTCAAGCTTACTCTCATGAATTTACCTAGCCGGTCTCCTTTGTGCATATACCATCTTCCTACCATGTTCACATCTGGATTTTCTCTCTCTTGGTCCATTGTAGAAGAATGCGTACATATTAGAGCAGACCTTTTTGCGTTCACCTGTAGATGTTCCAAGCAAGTTTTTAACTGTCTCAGTAGTGATATCTCCAGTGGTAAGTCTTGGTGATTGGAGTTTTCACATTCCTCATTAGGAACCTGAAGATTCTCTTTTGTTGATTATTGTCTTATACTTTCTTTACGCAAGTCATACGTTCCCATTCATGCATTTCATATAAATGAAGTCTTCCATGCCGCAAGTAGCATACAAGAAAACTGTAATGTCTAGTTAGGGACCGGTTAAAACAAAAACCAACTTCTCAATGACATAATGAAAAGATAAAACATCTAGGAGATACAAACTCTCACAATGAGAGGAAAAAGAAAAAAGAAAGGTAAGGATCTGCAAATACAACCAAAAAGGATAAACTTCCGAAACAAAAGAAAGTACAAAACTACCGAAGAAACCCAGAAAACGACCACCAACCAACAGAAGACTAACAAAGAGCAAACTGAAAACTCCTTAAACGATTTACACACTAAAAATCCAATGAAAGAAGCGTTTGATGAACCAATACCAAGAATCTTAAAAAGAAATCTTCTCCTAATGCTCTAAAAAATTCCATCAGGAGAATGAAACAAAGCCCAACAAGTAATATTAACCTGCCAAAGCGAAAACTTCAGAAACAGCGAACAAGAAACCGTCTTCCCTTTATAAAGCAATTCAAAAGAAAGTACACCCACGATCTCTAGCAATCAAAGCAAAAATTCAACTCTTATTGACAAACAAGTTGCCTCAGCTCCTTAGAACTTTACAAGAGGGGAAAGAGGGTGAATTTCTTTGAGTTGTAAACCACAAGCTTCAATTAAATATGAAAACCTTTTAGGAACTAAGGAAGGAAATATAACTGGTGAAAAAGGTTGAGAAGCCCTTATCAAATTATCTTGGACATAATTCATCTCAAAAGCATCAGCAAATGAACCCACAAGCTAAGCATCTTCAAACACTCTTTGTGCTTTCCAAGGTTGAACAAAGCAAGGAAAAGCAACTTAAATCATTCTCCACATCAAGAAACTAGGTTATGGAGAATGATTTTAATTTTGAAGGACTCTTTGTGTTTTCCAAGGTTAGAGAAGGTTGCTTTCTCTACACCTATGACTCTGCGGATGCCTGGTATGATAGAAATTTTCTGGTGATCTTATTTGTCATCAAGTTGACCAACCATACTATGACTGTATTATTGGCTGCTTCCCATCCTTCGTATTCAGTCTAACCATATAATTGGTTTTCTCATTTAGTTTGTGAGTATTGATGGATATGCAGCACCTTCAGAACCATCAGAACCATCAGAACCATCAGAACCATGTGTATGTGTATGGTTGAATGTTTCTTTTGTAACCGGGAGTGGAAGCTGCGCTCATACACTGGGACACCTGTACCTGACCCAAGGACTGGAGTTGATTGTAGTGAATAATGTATTTTGCATGAGATGAATTATGTCAATAAAGTTTCTTTGCATTACTTTCTGCAGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAACAGCAGTGACTTTGAACTTGGTGGCGAGATGACTGGAGAAAACAGAGATTTCTCCCGTAGAAGTGCTGTTTCAACGGAAGTTAACAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGTCAATTTCCTTATGATTTTATTGAGATCTAGTGAATATGCTATTCAAATGTCTAAATTCATTTCATCTGATCTGTTTCATTTATTACTCTTACCTTGTTTGACGAGTTCTGACCAAAATAACCATAATTTGATGACTAGTTAATGAAATTATTATTATATTCCACCATGAATATTGAAAGACTGGCTGGACATGCAAAATGAAAATCACAAATAATGGGTCTACAAAAAATATCAAATGTTGGCTCCAAACGTTGAGAACCATCCAAAAGAAATGGACGGCCAAAAAAGCCTAAACGAAAAATTTATAGTGAGCCAAGTTTCACGCATCCTTCCATGACCTCTCTGCTAGTCTTCCCCACAAAATTCCTCGTGTTCCTTTCCAACTAAATACACCAAATAACAAAACAAAATAAAATAAAAATTGCCTCCCGAGGAACCTTCCCATTGTTACAGAAAGGAGGATGAAAACTAATTTCCTCCGCACATCCCTAAGTCTAAGTGTGTGATCAGAAATGAAAAGCATACTCCAGTCCATCATGGACGATGAATTCTCTTCCTGAAAAAGGCACCTTTTATCAACAGATGCCAAAGAAGGAAACCAATCTACCCAAACAAACAACCATTCTGAACTCTTGGAGAACCTCAGCAAAACAAAAGTTGCCTTTCTCAACCACAAACTTCCCTCCATTCATAAAGCCCAATTCGAAAGACTTACTTTCTATTGGAAAACGCCACCAAACACGTAGGCAGTGATAATCAAAGAAGAAAGTGCCAGACTTCTTCCTCCCGAAAAAAAAAAAAAAAAACTAGCAGCTTTCTAACAGTAACTGTAACTTCGGCACGCCAAAGCCTAATAATTGGAACCAATAATTCTGTTGAATCTTAGCAAGCAAGAGTGGGTTATGGAGTATCCAATGTCCATTCAGCAGAAAACACCAATAAATTTAAGTATATAAATGCTCTAAAACTCCCCCTCATTTATACGCTTTAAAATGTGTAAAATGCCCAACATGTGGAAATTTCAATATTAACTAAGGAAAAATAAACATTACAAAGGTCGAAGATAGATAGGACTTCTTTTTCTGATACCATAATAGACTATCAAGCAAACTAAAAACTTAAACAGAATTACAGAATTAATTCCCCAACAGTCTCATGGATTAAAATTTAGTTATTTTCATTTCTATCATTACAACTACATATTTCAGTTGTATGTCTTATGTAGTTTGAATTAATTATGTTTGCTTTTCAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCATCATAACGGTTTCGTTCTTTTTTGGTTTATACTTTGTAAGTTTCCTTTCACTTACTACTACAGAGGAGCTGGACTTACAAAACCCTAAAGGGAAACTAACAATTATTCTCTAACATTTAACGCAGTTTTTGGGAGCCTCTTTTATTCATGATGGCCAAACGCCAATATCTCCTCCACCGTATGTTGACCCATATGCTCTTTTAGAGGACGAAAGAATTTCACAAATAGCTCCTCCTGTAAATTGA

mRNA sequence

ATGGACGTCGGAGGAGTTTGCGTTATGCCTGCGTTTATAGAAGGTTCACTTTCCGTTGCGCTGCTAAAGATACTGATAAGGAAACCAATGGCAAATGCTCCGTCGCTTCTGAATTATCTCGCTCAGTTGAAAGTAGCTCAATCATGTAGCAAAATCGTGCGAAAGAATGCGTACATATTAGAGCAGACCTTTTTGCGTTCACCTGTAGATGTTCCAAGCAAGTTTTTAACTGTCTCAGTAGTGATATCTCCAGTGGACTCTTTGTGTTTTCCAAGGTTAGAGAAGGTTGCTTTCTCTACACCTATGACTCTGCGGATGCCTGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAACAGCAGTGACTTTGAACTTGGTGGCGAGATGACTGGAGAAAACAGAGATTTCTCCCGTAGAAGTGCTGTTTCAACGGAAGTTAACAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCATCATAACGGTTTCGTTCTTTTTTGGTTTATACTTTTTTTTGGGAGCCTCTTTTATTCATGATGGCCAAACGCCAATATCTCCTCCACCGTATGTTGACCCATATGCTCTTTTAGAGGACGAAAGAATTTCACAAATAGCTCCTCCTGTAAATTGA

Coding sequence (CDS)

ATGGACGTCGGAGGAGTTTGCGTTATGCCTGCGTTTATAGAAGGTTCACTTTCCGTTGCGCTGCTAAAGATACTGATAAGGAAACCAATGGCAAATGCTCCGTCGCTTCTGAATTATCTCGCTCAGTTGAAAGTAGCTCAATCATGTAGCAAAATCGTGCGAAAGAATGCGTACATATTAGAGCAGACCTTTTTGCGTTCACCTGTAGATGTTCCAAGCAAGTTTTTAACTGTCTCAGTAGTGATATCTCCAGTGGACTCTTTGTGTTTTCCAAGGTTAGAGAAGGTTGCTTTCTCTACACCTATGACTCTGCGGATGCCTGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAACAGCAGTGACTTTGAACTTGGTGGCGAGATGACTGGAGAAAACAGAGATTTCTCCCGTAGAAGTGCTGTTTCAACGGAAGTTAACAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCATCATAACGGTTTCGTTCTTTTTTGGTTTATACTTTTTTTTGGGAGCCTCTTTTATTCATGATGGCCAAACGCCAATATCTCCTCCACCGTATGTTGACCCATATGCTCTTTTAGAGGACGAAAGAATTTCACAAATAGCTCCTCCTGTAAATTGA

Protein sequence

MDVGGVCVMPAFIEGSLSVALLKILIRKPMANAPSLLNYLAQLKVAQSCSKIVRKNAYILEQTFLRSPVDVPSKFLTVSVVISPVDSLCFPRLEKVAFSTPMTLRMPGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDPYALLEDERISQIAPPVN*
Homology
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BLAST of CsaV3_4G000050 vs. NCBI nr
Match: KAE8649025.1 (hypothetical protein Csa_015052 [Cucumis sativus])

HSP 1 Score: 493.0 bits (1268), Expect = 1.5e-135
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0 

Query: 1   MDVGGVCVMPAFIEGSLSVALLKILIRKPMANAPSLLNYLAQLKVAQSCSKIVRKNAYIL 60
           MDVGGVCVMPAFIEGSLSVALLKILIRKPMANAPSLLNYLAQLKVAQSCSKIVRKNAYIL
Sbjct: 1   MDVGGVCVMPAFIEGSLSVALLKILIRKPMANAPSLLNYLAQLKVAQSCSKIVRKNAYIL 60

Query: 61  EQTFLRSPVDVPSKFLTVSVVISPVDSLCFPRLEKVAFSTPMTLRMPGEEPPESLFMKEL 120
           EQTFLRSPVDVPSKFLTVSVVISPVDSLCFPRLEKVAFSTPMTLRMPGEEPPESLFMKEL
Sbjct: 61  EQTFLRSPVDVPSKFLTVSVVISPVDSLCFPRLEKVAFSTPMTLRMPGEEPPESLFMKEL 120

Query: 121 KKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEG 180
           KKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEG
Sbjct: 121 KKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEG 180

Query: 181 LEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP 240
           LEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP
Sbjct: 181 LEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHDGQTPISPPPYVDP 240

Query: 241 YALLEDERISQIAPPVN 258
           YALLEDERISQIAPPVN
Sbjct: 241 YALLEDERISQIAPPVN 257

[Close]
BLAST of CsaV3_4G000050 vs. NCBI nr
Match: KAA0044314.1 (tubulin alpha chain [Cucumis melo var. makuwa])

HSP 1 Score: 335.9 bits (860), Expect = 3.1e-88
Identity = 191/273 (69.96%), Postives = 211/273 (77.29%), Query Frame = 0 

Query: 1   MDVGGVCVMPAFIEGSLSVALLKILIRKPMANAPSLLNYL-AQLKVAQSCSKIVRKNAYI 60
           MDVGGVCV+PAF+EGS+S ALLK+LIRK MA+    ++ + A  K +  C          
Sbjct: 1   MDVGGVCVLPAFVEGSVSAALLKMLIRKAMASFNCFVSTVKAFRKRSSMCQADKSSTRTC 60

Query: 61  LEQTFLRSPVD------VPSKFLTVSVVISPVDSLCFPR----------LEKVAFSTPMT 120
           +     R+ +D      + + F   S V +       P           LEKVAFSTPMT
Sbjct: 61  VRSGSWRACLDCLNSFRIAAWFAWSSCVEAHEAFKLIPHEFTYPVSLRLLEKVAFSTPMT 120

Query: 121 LRMPGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVN 180
           L+MPGEEPPESLFMKELKKRGITPTSLLEDTN+SDF LGGEMTGENRDFSRRSAVSTEVN
Sbjct: 121 LQMPGEEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVN 180

Query: 181 KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGAS 240
           KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFF G+S
Sbjct: 181 KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSS 240

Query: 241 FIHDGQTPISPPPYVDPYALLEDERISQIAPPV 257
           FIHDG+TPISPPPYVDPYALLEDERISQIAPP+
Sbjct: 241 FIHDGKTPISPPPYVDPYALLEDERISQIAPPL 273

[Close]
BLAST of CsaV3_4G000050 vs. NCBI nr
Match: TYK29443.1 (tubulin alpha chain [Cucumis melo var. makuwa])

HSP 1 Score: 302.0 bits (772), Expect = 5.0e-78
Identity = 195/334 (58.38%), Postives = 212/334 (63.47%), Query Frame = 0 

Query: 1   MDVGGVCVMPAFIEGSLSVALLKILIRKPMAN------------APS------------- 60
           MDVGGVCV+PAF+EGS+S ALLK+LIRK MA+             PS             
Sbjct: 1   MDVGGVCVLPAFVEGSVSAALLKMLIRKAMASFNCFVSTVKAFRKPSSMCQADKSSTRTC 60

Query: 61  --------LLNYLAQLKVA-----QSCSKIVRKNAYILEQTFLRSPVD----------VP 120
                    L+ L   ++A      SC  +    A+ L       PV           VP
Sbjct: 61  VRSGSWRACLDCLNSFRIAAWFAWSSC--VEAHEAFKLIPHEFTYPVSLRLYTIFLPYVP 120

Query: 121 SKFLTVSVVIS-PVDSLCF-------------PRLEKVAFSTPMTLRMPG---------- 180
            KF+T SVV+S  V   CF                  V   + M L  PG          
Sbjct: 121 RKFVTASVVMSRMVRKGCFLYTYDSADACTFRYHQNHVCVYSSMFLLYPGVEAALINGTP 180

Query: 181 ------EEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEV 240
                 EEPPESLFMKELKKRGITPTSLLEDTN+SDF LGGEMTGENRDFSRRSAVSTEV
Sbjct: 181 VPAPKREEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEV 240

Query: 241 NKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGA 257
           NKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFF G+
Sbjct: 241 NKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGS 300

[Close]
BLAST of CsaV3_4G000050 vs. NCBI nr
Match: XP_004150271.1 (uncharacterized protein LOC101221726 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 2.3e-75
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 108 GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS 167
           GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS
Sbjct: 68  GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS 127

Query: 168 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD 227
           NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD
Sbjct: 128 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD 187

Query: 228 GQTPISPPPYVDPYALLEDERISQIAPPVN 258
           GQTPISPPPYVDPYALLEDERISQIAPPVN
Sbjct: 188 GQTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]
BLAST of CsaV3_4G000050 vs. NCBI nr
Match: XP_008454422.1 (PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo] >XP_008454423.1 PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo])

HSP 1 Score: 285.0 bits (728), Expect = 6.3e-73
Identity = 145/150 (96.67%), Postives = 148/150 (98.67%), Query Frame = 0 

Query: 108 GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS 167
           GEEPPESLFMKELKKRGITPTSLLEDTN+SDF LGGEMTGENRDFSRRSAVSTEVNKSLS
Sbjct: 68  GEEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVNKSLS 127

Query: 168 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD 227
           NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFF G+SFIHD
Sbjct: 128 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSSFIHD 187

Query: 228 GQTPISPPPYVDPYALLEDERISQIAPPVN 258
           G+TPISPPPYVDPYALLEDERISQIAPPVN
Sbjct: 188 GKTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]
BLAST of CsaV3_4G000050 vs. ExPASy TrEMBL
Match: A0A5A7TME0 (Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00360 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.5e-88
Identity = 191/273 (69.96%), Postives = 211/273 (77.29%), Query Frame = 0 

Query: 1   MDVGGVCVMPAFIEGSLSVALLKILIRKPMANAPSLLNYL-AQLKVAQSCSKIVRKNAYI 60
           MDVGGVCV+PAF+EGS+S ALLK+LIRK MA+    ++ + A  K +  C          
Sbjct: 1   MDVGGVCVLPAFVEGSVSAALLKMLIRKAMASFNCFVSTVKAFRKRSSMCQADKSSTRTC 60

Query: 61  LEQTFLRSPVD------VPSKFLTVSVVISPVDSLCFPR----------LEKVAFSTPMT 120
           +     R+ +D      + + F   S V +       P           LEKVAFSTPMT
Sbjct: 61  VRSGSWRACLDCLNSFRIAAWFAWSSCVEAHEAFKLIPHEFTYPVSLRLLEKVAFSTPMT 120

Query: 121 LRMPGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVN 180
           L+MPGEEPPESLFMKELKKRGITPTSLLEDTN+SDF LGGEMTGENRDFSRRSAVSTEVN
Sbjct: 121 LQMPGEEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVN 180

Query: 181 KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGAS 240
           KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFF G+S
Sbjct: 181 KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSS 240

Query: 241 FIHDGQTPISPPPYVDPYALLEDERISQIAPPV 257
           FIHDG+TPISPPPYVDPYALLEDERISQIAPP+
Sbjct: 241 FIHDGKTPISPPPYVDPYALLEDERISQIAPPL 273

[Close]
BLAST of CsaV3_4G000050 vs. ExPASy TrEMBL
Match: A0A5D3E071 (Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00360 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.4e-78
Identity = 195/334 (58.38%), Postives = 212/334 (63.47%), Query Frame = 0 

Query: 1   MDVGGVCVMPAFIEGSLSVALLKILIRKPMAN------------APS------------- 60
           MDVGGVCV+PAF+EGS+S ALLK+LIRK MA+             PS             
Sbjct: 1   MDVGGVCVLPAFVEGSVSAALLKMLIRKAMASFNCFVSTVKAFRKPSSMCQADKSSTRTC 60

Query: 61  --------LLNYLAQLKVA-----QSCSKIVRKNAYILEQTFLRSPVD----------VP 120
                    L+ L   ++A      SC  +    A+ L       PV           VP
Sbjct: 61  VRSGSWRACLDCLNSFRIAAWFAWSSC--VEAHEAFKLIPHEFTYPVSLRLYTIFLPYVP 120

Query: 121 SKFLTVSVVIS-PVDSLCF-------------PRLEKVAFSTPMTLRMPG---------- 180
            KF+T SVV+S  V   CF                  V   + M L  PG          
Sbjct: 121 RKFVTASVVMSRMVRKGCFLYTYDSADACTFRYHQNHVCVYSSMFLLYPGVEAALINGTP 180

Query: 181 ------EEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEV 240
                 EEPPESLFMKELKKRGITPTSLLEDTN+SDF LGGEMTGENRDFSRRSAVSTEV
Sbjct: 181 VPAPKREEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEV 240

Query: 241 NKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGA 257
           NKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFF G+
Sbjct: 241 NKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGS 300

[Close]
BLAST of CsaV3_4G000050 vs. ExPASy TrEMBL
Match: A0A0A0KY14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000570 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.1e-75
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 108 GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS 167
           GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS
Sbjct: 68  GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS 127

Query: 168 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD 227
           NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD
Sbjct: 128 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD 187

Query: 228 GQTPISPPPYVDPYALLEDERISQIAPPVN 258
           GQTPISPPPYVDPYALLEDERISQIAPPVN
Sbjct: 188 GQTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]
BLAST of CsaV3_4G000050 vs. ExPASy TrEMBL
Match: A0A1S3BY38 (uncharacterized protein LOC103494832 OS=Cucumis melo OX=3656 GN=LOC103494832 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 3.1e-73
Identity = 145/150 (96.67%), Postives = 148/150 (98.67%), Query Frame = 0 

Query: 108 GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS 167
           GEEPPESLFMKELKKRGITPTSLLEDTN+SDF LGGEMTGENRDFSRRSAVSTEVNKSLS
Sbjct: 68  GEEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVNKSLS 127

Query: 168 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD 227
           NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFF G+SFIHD
Sbjct: 128 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSSFIHD 187

Query: 228 GQTPISPPPYVDPYALLEDERISQIAPPVN 258
           G+TPISPPPYVDPYALLEDERISQIAPPVN
Sbjct: 188 GKTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]
BLAST of CsaV3_4G000050 vs. ExPASy TrEMBL
Match: A0A6J1D5D9 (uncharacterized protein LOC111017763 OS=Momordica charantia OX=3673 GN=LOC111017763 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 6.6e-68
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 0 

Query: 108 GEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRSAVSTEVNKSLS 167
           GEEPPESLFMKELKKRG+TPTSLLED+NS+DF LGGEMTGE RDFS RSAVSTEVNKSLS
Sbjct: 72  GEEPPESLFMKELKKRGLTPTSLLEDSNSNDFGLGGEMTGEGRDFSSRSAVSTEVNKSLS 131

Query: 168 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIHD 227
           NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF LYFF G SF+H+
Sbjct: 132 NQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFFGPSFVHN 191

Query: 228 GQTPISPPPYVDPYALLEDERISQIAPPVN 258
           G+TPISPPPYVDPYALLEDERISQ AP VN
Sbjct: 192 GETPISPPPYVDPYALLEDERISQTAPRVN 221

[Close]
BLAST of CsaV3_4G000050 vs. TAIR 10
Match: AT1G50020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-47
Identity = 99/152 (65.13%), Postives = 121/152 (79.61%), Query Frame = 0 

Query: 108 GEEPPESLFMKELKKRGITPTSLLEDTNSSDFEL-GGEMTGENRDFSRRSAVSTEVNKSL 167
           GEEPPESLFMKELK+RG+TPTSLL+D      E+  G+ TG +   S+ +A +   +KSL
Sbjct: 61  GEEPPESLFMKELKRRGMTPTSLLQDYEVDQDEIKTGKETGNS---SKTTATTPAFDKSL 120

Query: 168 SNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFLGASFIH 227
            NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLI++T+  F  LY + GA FIH
Sbjct: 121 LNQRERSLALNSEGLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSALYLYFGADFIH 180

Query: 228 DG-QTPISPPPYVDPYALLEDERISQIAPPVN 258
           DG +TP+SPPPY+DPYALLEDERIS + P +N
Sbjct: 181 DGSRTPVSPPPYIDPYALLEDERISGMDPRLN 209

The following BLAST results are available for this feature:
BLAST of CsaV3_4G000050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649025.11.5e-135100.00hypothetical protein Csa_015052 [Cucumis sativus][more]
KAA0044314.13.1e-8869.96tubulin alpha chain [Cucumis melo var. makuwa][more]
TYK29443.15.0e-7858.38tubulin alpha chain [Cucumis melo var. makuwa][more]
XP_004150271.12.3e-75100.00uncharacterized protein LOC101221726 [Cucumis sativus][more]
XP_008454422.16.3e-7396.67PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo] >XP_008454423.1 P... [more]
BLAST of CsaV3_4G000050 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G000050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TME01.5e-8869.96Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G0... [more]
A0A5D3E0712.4e-7858.38Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G... [more]
A0A0A0KY141.1e-75100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000570 PE=4 SV=1[more]
A0A1S3BY383.1e-7396.67uncharacterized protein LOC103494832 OS=Cucumis melo OX=3656 GN=LOC103494832 PE=... [more]
A0A6J1D5D96.6e-6890.00uncharacterized protein LOC111017763 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
BLAST of CsaV3_4G000050 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G50020.12.8e-4765.13unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..157
NoneNo IPR availablePANTHERPTHR35699F2J10.10 PROTEINcoord: 107..257

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G000050.1CsaV3_4G000050.1mRNA