CsaV3_3G049000 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G049000
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 39983233 .. 39983975 (-)
RNA-Seq ExpressionCsaV3_3G049000
SyntenyCsaV3_3G049000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATACCTAAAAAAACTTGGCGGCAGTAGGCGGCTAGAATTTGCGAACTTTCTCCCTTTCTCTCTCAAAAATTTGGATTGTGAATGAATTATAACATTTCACTTTCCGTGACGTCTTGCGTTGCAAAAAGATTATCATACGAAATTAGGGTTAGACTTACTGCGACGTCGGAGGGTGCCACTTACTGCGACGTCGGCGTCGGAGGGTGCCACTTACTGCGACGTCGGCGTCGGAGGGTGCCACTTACTGCGACGTCGGCGTCGGAGGGTGCCACTTACTGCGACGTCGGCGTCGGAGGGTGCCACTTACTGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACTGCGACGTCGGAGGAGGGTGCCAGGGTGCCACTTACCGCGACGTCGGAGGAGGGTGCCACTTACTGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACGCCACGTCCTGAAAAGTGAAACAGTAAATTAATTAGTACATTTACATTGACGTTTGTTTTCCAGCGTCGCGGAATGTGGTGTTTGGTGACGTGTTAACATGGACATAGCGAAAAGTCTAGCAACGTCGTGTCTGGCGTCGCGATATCTCCGTTTTCTTGTAGTGGAGGGATTGTTCTTCTAATACAGCTTGCAACTTCTCTTGAACCAAAAAGCCGATAA

mRNA sequence

AAATACCTAAAAAAACTTGGCGGCAGGTTAGACTTACTGCGACGTCGGAGGGTGCCACTTACTGCGACGTCGGCGTCGGAGGGTGCCACTTACTGCGACGGTGCCACTTACTGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACTGCGACGTCGGAGGAGGGGTGCCACTTACTGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACGCCACGTCCTGAAAACGTCGCGGAATGTGGTGTTTGGTGACGTTGGAGGGATTGTTCTTCTAATACAGCTTGCAACTTCTCTTGAACCAAAAAGCCGATAA

Coding sequence (CDS)

AAATACCTAAAAAAACTTGGCGGCAGGTTAGACTTACTGCGACGTCGGAGGGTGCCACTTACTGCGACGTCGGCGTCGGAGGGTGCCACTTACTGCGACGGTGCCACTTACTGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACTTACTGCGACGTCGGAGGAGGGGTGCCACTTACTGCGACGTCGGAGGGTGCCACTTACCGCGACGTCGGAGGGTGCCACGCCACGTCCTGAAAACGTCGCGGAATGTGGTGTTTGGTGACGTTGGAGGGATTGTTCTTCTAATACAGCTTGCAACTTCTCTTGAACCAAAAAGCCGATAA

Protein sequence

KYLKKLGGRLDLLRRRRVPLTATSASEGATYCDGATYCDVGGCHLPRRRRVPLTATSEGATYRDVGGCHLLRRRRRGATYCDVGGCHLPRRRRVPRHVLKTSRNVVFGDVGGIVLLIQLATSLEPKSR*
Homology
[Close]
BLAST of CsaV3_3G049000 vs. NCBI nr
Match: KAE8651434.1 (hypothetical protein Csa_023532, partial [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 6.8e-68
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   KYLKKLGGRLDLLRRRRVPLTATSASEGATYCDGATYCDVGGCHLPRRRRVPLTATSEGA 60
           KYLKKLGGRLDLLRRRRVPLTATSASEGATYCDGATYCDVGGCHLPRRRRVPLTATSEGA
Sbjct: 1   KYLKKLGGRLDLLRRRRVPLTATSASEGATYCDGATYCDVGGCHLPRRRRVPLTATSEGA 60

Query: 61  TYRDVGGCHLLRRRRRGATYCDVGGCHLPRRRRVPRHVLKTSRNVVFGDVGGIVLLIQLA 120
           TYRDVGGCHLLRRRRRGATYCDVGGCHLPRRRRVPRHVLKTSRNVVFGDVGGIVLLIQLA
Sbjct: 61  TYRDVGGCHLLRRRRRGATYCDVGGCHLPRRRRVPRHVLKTSRNVVFGDVGGIVLLIQLA 120

Query: 121 TSLEPKSR 129
           TSLEPKSR
Sbjct: 121 TSLEPKSR 128

[Close]
BLAST of CsaV3_3G049000 vs. ExPASy TrEMBL
Match: A0A0A0LF09 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901140 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.5e-32
Identity = 89/141 (63.12%), Postives = 91/141 (64.54%), Query Frame = 0 

Query: 16  RRVPLTATSASEGATYCD------GATYCDVGGCHLP-RRRRVPLTATSEGATYRDVGGC 75
           R+V LTAT  SEGATYCD      GATY DVGGC LP RRRRV LTATSEGA YRDVGGC
Sbjct: 9   RQVRLTAT--SEGATYCDVGGGCQGATYRDVGGCPLPRRRRRVTLTATSEGAPYRDVGGC 68

Query: 76  HLLRRRR-------RGATYCDVGGCHLPRRRRVPRHVLKTSRNVVFGDV----------- 129
            L RRRR        GATYCDVGGCHL RRRRVP      S    + DV           
Sbjct: 69  PLPRRRRVPLTATSEGATYCDVGGCHLRRRRRVPLTATSASEGATYCDVGGGCQGATYRD 128

The following BLAST results are available for this feature:
BLAST of CsaV3_3G049000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651434.16.8e-68100.00hypothetical protein Csa_023532, partial [Cucumis sativus][more]
BLAST of CsaV3_3G049000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G049000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF096.5e-3263.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901140 PE=4 SV=1[more]
BLAST of CsaV3_3G049000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G049000.1CsaV3_3G049000.1mRNA