CsaV3_3G048160 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G048160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 39334118 .. 39334428 (+)
RNA-Seq Expression	CsaV3_3G048160
Synteny	CsaV3_3G048160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTTCCTGACCATGAGAACAGTGATCGAACTATGAAGGCCATGAAAACACCAGAATCGAGTACTGAAGTAAAGTCAGAGCAGGAAATTATATCAAAGATGCGTAGTAAGTATGAATATAAGTTGAGAAGCACGAAGATGGAGGTCGATGAAGATTGAAGACGACGAAGAAACATCAGAGAAAGAGTTCTATGAGAAAGAATGGATCAAAACCTGAGGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGGTTGTACCAGGCTACGAAGAAGCAGAGCAATTTGATGTTTGA

mRNA sequence

ATGACATTTCCTGACCATGAGAACAGTGATCGAACTATGAAGGCCATGAAAACACCAGAATCGAGTACTGAAGTAAAGTCAGAGCAGGAAATTATATCAAAGATGCGTAGTAAATTGAAGACGACGAAGAAACATCAGAGAAAGAGTTCTATGAGAAAGAATGGATCAAAACCTGAGGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGGTTGTACCAGGCTACGAAGAAGCAGAGCAATTTGATGTTTGA

Coding sequence (CDS)

ATGACATTTCCTGACCATGAGAACAGTGATCGAACTATGAAGGCCATGAAAACACCAGAATCGAGTACTGAAGTAAAGTCAGAGCAGGAAATTATATCAAAGATGCGTAGTAAATTGAAGACGACGAAGAAACATCAGAGAAAGAGTTCTATGAGAAAGAATGGATCAAAACCTGAGGAGGAGAATGGATTGTATGTGATGCCTCACGCGAGGAGACCAAAAACGGTTGTACCAGGCTACGAAGAAGCAGAGCAATTTGATGTTTGA

Protein sequence

MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEEENGLYVMPHARRPKTVVPGYEEAEQFDV*

Homology

[Close]

BLAST of CsaV3_3G048160 vs. NCBI nr
Match: KGN60280.1 (hypothetical protein Csa_001917 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 7.8e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE 60
          MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE
Sbjct: 1  MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE 60

Query: 61 ENGLYVMPHARRPKTVVPGYEEAEQFDV 89
          ENGLYVMPHARRPKTVVPGYEEAEQFDV
Sbjct: 61 ENGLYVMPHARRPKTVVPGYEEAEQFDV 88

[Close]

BLAST of CsaV3_3G048160 vs. ExPASy TrEMBL
Match: A0A0A0LE35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893300 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE 60
          MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE
Sbjct: 1  MTFPDHENSDRTMKAMKTPESSTEVKSEQEIISKMRSKLKTTKKHQRKSSMRKNGSKPEE 60

Query: 61 ENGLYVMPHARRPKTVVPGYEEAEQFDV 89
          ENGLYVMPHARRPKTVVPGYEEAEQFDV
Sbjct: 61 ENGLYVMPHARRPKTVVPGYEEAEQFDV 88

The following BLAST results are available for this feature:

BLAST of CsaV3_3G048160 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60280.1	7.8e-39	100.00	hypothetical protein Csa_001917 [Cucumis sativus]	[more]

BLAST of CsaV3_3G048160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G048160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE35	3.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893300 PE=4 SV=1	[more]

BLAST of CsaV3_3G048160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G048160.1	CsaV3_3G048160.1	mRNA