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CsaV3_3G047130 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTAATGCTTTCTCTTTTTATATCATTTTTAAAGTTTAATTTACATTTTAACTCGTTTAAATGTTTATAAACTATATTATTATGAGAAATTATGTGCAATTCATAATTAAAAAAAATTAAAAAAATTGAAATTTTGCTATAAAATAGTGAGTAATAAACTTATGAGTTTAACCATTTATTTTATTTTATTTTTTGTTTGTATTTTGTTTAATTTGTAATTTAGTTAAAGGAAAAAGAAAAAGAAAAGAAAAACAAAAAACAAATTCCAAACTAAATTCTTCCTGAAAACTCTTAAAATATCCCTTTCTCTGTAAAGTTCATCGAGACCCCCCTTATCCTTTACTCTCTCTTTCTCTTTCTCTCTACCAGAAAAGTCAGTGCCAATCACCAAACCGCCGCCGGTTTATGACAACGAACCCTAATCCTTTGGCGTCGCCGGTGGGCTGAACTACAGCGGAGGAAGCTCGGAAGCCCGCCCCATCTCACTAGTGGGACGGAATCCATCTCCACCGCTAACTCATGGAAGTTTTGTTCGGTCCTCCAACCTTTAGCATCGAGGTTCCGCCGTCCTCGGCGTTCTCCGCCGTCTCTCTTCCGTCGGAGAATCCATCCGCTGCCGACACTCAGAACCTAGCTCGGTCGGGTTTTCTCCGCTCTGGATCTGGTAGCTCGATTGGGGAAAATTCGTCGGAGAGTTCGTCGTCGATTGGAGTTCCTGACGGTGATTCCGATGACGATGGAGGCGGTGGTGATGAGGTGCAGAGCAAGCCAAAGGAAGGAGGATTGTGCGGATTAGAGTCTCTTGAAAAAGCTCTTCCGATTAAGTGAGTTTCTCTATCCTTGATTCTTAAAATCGAAGGTGAATTTAGCAAATTGAACTTGAAAAATTTTCTATTAACCATCTAATTTCGACGCGAGTTAGCGATTTCCAACTCTTGAATGTAATGAACTTGCAGGAGGGGATTATCGAGCCATTTCTCAGGGAAATCGAAGTCGTTTGCGAATCTATCAGAGGTGATTCAAGTGAAAGATTTAGAGAAGGCAGAGAATCCTTTCAACAAGAGAAGAAGGATTTTAATGGCGTCGAAATGGTCAAGAAAGAAAGGTTCGTTCTACAACTGGCCAAACCCTAAATCGATGCCTCTGTTAGCTCTGAACGAAAACAATGAAGAAGAAGAAGAAGAAGAAGAAGATGGTAAAGAATCCGGCGAGGAATCCGATGAAGGTAAAGGAGGAAGAAGACGAAGCCTAGGGCAGAGATTCCATGATGGGAAGCTCGTTAATGGCTTAAAATTCAAAAGCTGTTTTGATCTGCAAGAATATGAACAACAACAATGAAAATGAAAAATCTTTAAGCCTCTTTGTTCTTCACTTTTTAAAGATTTATTTATCTGAACAAAAAGGAAGGCAACAAAAAATATTTATTTTTTTTTCTTTTTTTAATTTTCTTTTTTTATGTTTAATGTGTCCATGTAGATAAATTAATAATATAGGTTCTATATAATTATCTATTTAGATATGTATATGTATTCTATTATATTGGTGTCTCAATGTGTGTATGATTTATGATATGAATGTTTGAGGGAGATGGCAAGTGATGGTGAAATTATGCAAATCTCCTCGGACATGATTCGGGCTAAGAGTAGGATGAGTTATAATCCTTCTTAGTTTCAGGTCATAAATTCAATCTAAGATGATCGTCTATCTAAAATTAATTTTCTATGGGTTTACTATCGTTCAAATTTTGTAAGATAGGGCGTGTTGTCCTATGAGAACACTCACAAGTATATTATTGTTTGGTTTTAGTTGAAGATTAAGATTATATTTTAAAATAATTCAC ATGGAAGTTTTGTTCGGTCCTCCAACCTTTAGCATCGAGGTTCCGCCGTCCTCGGCGTTCTCCGCCGTCTCTCTTCCGTCGGAGAATCCATCCGCTGCCGACACTCAGAACCTAGCTCGGTCGGGTTTTCTCCGCTCTGGATCTGGTAGCTCGATTGGGGAAAATTCGTCGGAGAGTTCGTCGTCGATTGGAGTTCCTGACGGTGATTCCGATGACGATGGAGGCGGTGGTGATGAGGTGCAGAGCAAGCCAAAGGAAGGAGGATTGTGCGGATTAGAGTCTCTTGAAAAAGCTCTTCCGATTAAGAGGGGATTATCGAGCCATTTCTCAGGGAAATCGAAGTCGTTTGCGAATCTATCAGAGGTGATTCAAGTGAAAGATTTAGAGAAGGCAGAGAATCCTTTCAACAAGAGAAGAAGGATTTTAATGGCGTCGAAATGGTCAAGAAAGAAAGGTTCGTTCTACAACTGGCCAAACCCTAAATCGATGCCTCTGTTAGCTCTGAACGAAAACAATGAAGAAGAAGAAGAAGAAGAAGAAGATGGTAAAGAATCCGGCGAGGAATCCGATGAAGGTAAAGGAGGAAGAAGACGAAGCCTAGGGCAGAGATTCCATGATGGGAAGCTCGTTAATGGCTTAAAATTCAAAAGCTGTTTTGATCTGCAAGAATATGAACAACAACAATGA ATGGAAGTTTTGTTCGGTCCTCCAACCTTTAGCATCGAGGTTCCGCCGTCCTCGGCGTTCTCCGCCGTCTCTCTTCCGTCGGAGAATCCATCCGCTGCCGACACTCAGAACCTAGCTCGGTCGGGTTTTCTCCGCTCTGGATCTGGTAGCTCGATTGGGGAAAATTCGTCGGAGAGTTCGTCGTCGATTGGAGTTCCTGACGGTGATTCCGATGACGATGGAGGCGGTGGTGATGAGGTGCAGAGCAAGCCAAAGGAAGGAGGATTGTGCGGATTAGAGTCTCTTGAAAAAGCTCTTCCGATTAAGAGGGGATTATCGAGCCATTTCTCAGGGAAATCGAAGTCGTTTGCGAATCTATCAGAGGTGATTCAAGTGAAAGATTTAGAGAAGGCAGAGAATCCTTTCAACAAGAGAAGAAGGATTTTAATGGCGTCGAAATGGTCAAGAAAGAAAGGTTCGTTCTACAACTGGCCAAACCCTAAATCGATGCCTCTGTTAGCTCTGAACGAAAACAATGAAGAAGAAGAAGAAGAAGAAGAAGATGGTAAAGAATCCGGCGAGGAATCCGATGAAGGTAAAGGAGGAAGAAGACGAAGCCTAGGGCAGAGATTCCATGATGGGAAGCTCGTTAATGGCTTAAAATTCAAAAGCTGTTTTGATCTGCAAGAATATGAACAACAACAATGA MEVLFGPPTFSIEVPPSSAFSAVSLPSENPSAADTQNLARSGFLRSGSGSSIGENSSESSSSIGVPDGDSDDDGGGGDEVQSKPKEGGLCGLESLEKALPIKRGLSSHFSGKSKSFANLSEVIQVKDLEKAENPFNKRRRILMASKWSRKKGSFYNWPNPKSMPLLALNENNEEEEEEEEDGKESGEESDEGKGGRRRSLGQRFHDGKLVNGLKFKSCFDLQEYEQQQ* Homology
BLAST of CsaV3_3G047130 vs. NCBI nr
Match: XP_004136309.2 (uncharacterized protein LOC101218277 [Cucumis sativus] >KGN60173.1 hypothetical protein Csa_002443 [Cucumis sativus]) HSP 1 Score: 428.3 bits (1100), Expect = 4.1e-116 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. NCBI nr
Match: XP_008466301.1 (PREDICTED: uncharacterized protein LOC103503753 [Cucumis melo]) HSP 1 Score: 379.0 bits (972), Expect = 2.8e-101 Identity = 209/231 (90.48%), Postives = 216/231 (93.51%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. NCBI nr
Match: XP_038898503.1 (uncharacterized protein LOC120086121 [Benincasa hispida]) HSP 1 Score: 321.6 bits (823), Expect = 5.4e-84 Identity = 185/233 (79.40%), Postives = 195/233 (83.69%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. NCBI nr
Match: XP_022137206.1 (transcription initiation factor TFIID subunit 7-like [Momordica charantia]) HSP 1 Score: 293.1 bits (749), Expect = 2.1e-75 Identity = 173/239 (72.38%), Postives = 191/239 (79.92%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. NCBI nr
Match: XP_022937406.1 (uncharacterized protein LOC111443706 [Cucurbita moschata] >XP_023535797.1 uncharacterized protein LOC111797124 [Cucurbita pepo subsp. pepo] >KAG6591629.1 hypothetical protein SDJN03_13975, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 284.3 bits (726), Expect = 9.5e-73 Identity = 167/233 (71.67%), Postives = 184/233 (78.97%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. ExPASy TrEMBL
Match: A0A0A0LEH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881860 PE=4 SV=1) HSP 1 Score: 428.3 bits (1100), Expect = 2.0e-116 Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. ExPASy TrEMBL
Match: A0A1S3CQX1 (uncharacterized protein LOC103503753 OS=Cucumis melo OX=3656 GN=LOC103503753 PE=4 SV=1) HSP 1 Score: 379.0 bits (972), Expect = 1.4e-101 Identity = 209/231 (90.48%), Postives = 216/231 (93.51%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. ExPASy TrEMBL
Match: A0A6J1C5V2 (transcription initiation factor TFIID subunit 7-like OS=Momordica charantia OX=3673 GN=LOC111008707 PE=4 SV=1) HSP 1 Score: 293.1 bits (749), Expect = 9.9e-76 Identity = 173/239 (72.38%), Postives = 191/239 (79.92%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. ExPASy TrEMBL
Match: A0A6J1FA94 (uncharacterized protein LOC111443706 OS=Cucurbita moschata OX=3662 GN=LOC111443706 PE=4 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 4.6e-73 Identity = 167/233 (71.67%), Postives = 184/233 (78.97%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. ExPASy TrEMBL
Match: A0A6J1ILJ2 (uncharacterized protein LOC111476326 OS=Cucurbita maxima OX=3661 GN=LOC111476326 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 1.0e-72 Identity = 167/236 (70.76%), Postives = 185/236 (78.39%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 113.2 bits (282), Expect = 2.7e-25 Identity = 96/240 (40.00%), Postives = 137/240 (57.08%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. TAIR 10
Match: AT2G24550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). ) HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20 Identity = 80/193 (41.45%), Postives = 110/193 (56.99%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 83.6 bits (205), Expect = 2.3e-16 Identity = 79/219 (36.07%), Postives = 108/219 (49.32%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. TAIR 10
Match: AT3G43850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 7.7e-12 Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 0
BLAST of CsaV3_3G047130 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 62.8 bits (151), Expect = 4.2e-10 Identity = 51/134 (38.06%), Postives = 75/134 (55.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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