CsaV3_3G046400 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCCCCCCCACAACTTTTTCCTCTCAGTTCTTTATTTGGCCATGAATCTCCATTTCCCTTCTCTCACACTCCATAGCTACACACTAGCTACACACTTTGGAGCTTGTTGCTGTGAGGAGAATGCCTCCAAGAACAGGGTGTAGGCCATTTGAGTGTGTGAGAAGAGCTTGGCATAGTGAAAGGCATCAACCCATTAGAGGATCTCTCATTCAAGAGATTTTCAGGTTCTTTCTTCACCTTTTCCCTTAAACCCTTTTTGTGTTTTTGGTTATGAAATCTGTTTTTTTTTTTTTCTTTCTTTCTTTCTTTTTGGTGTATGGAATGTTTGATTTTTGGGTGTTATCTGTTTAGGGTTGTTAGTGAAGTTCATTGTTGTGCTACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTCGTCCTTAAAGCTGAGGAGATTTTGTATTCTAAAGCTGACTCTGAGGTTCCCTCTTTTTTCTTATGACCTTTTATTATCAAAGTTTGTATTGTGTTTTGCTATATGGTCATCTTTTGAACCTGAGTAAGAACTAATTTGTTTTTGGGTGTAGCTCTGTTATGTCATTTTTTCTTTATCCTCAACTTTCTTTTAAAAAAGCTTAGTTTAGTCCATATTGTCATCCTTTTATAAAATAAAATATGATTAAGTTTTTGGGAGATTTGTGTTATGATGAGAACTAATGAAAACTAATCTTTGGTTGATGTCACTACCACTATTGCTTTAAGGATGCCCCTCCATGGCAAGATAATCGGAGCCATGGCGGGATCTTTTAATGTCTGAGTTTGGGCCATCCATACAAAAATCTTCTTAACTACACTCTTTTGTTTGAAAAACTACTAAATATTGTAAAAAATTGTGACATTATCATTGATCTTTCATTAAGATGAAAAATAGGATTGAAAGAGTGTAGTTTTGAAGAATAGGATTGGTTTTAGGCCACTGTCACATCATTATAATCATCTTTGATCGAAATGGTTCAGGGTAATATTTCAAGCTCCGAAAGAATAGGAGTAGTTGTGAAAAACATAGAGGGATATTTTTGTTATATGATTTAGGCAATAGAATCCTGAGATGGTCACTTTACTGTCCTAATAAGCAGATACATTTCATCGGGAAGTATTTGATTAGTTGATATATCTTAGGGAGGCTAAAATAGTTTTTTTATGTAAAGTGAGCAACTAAAACAGAAATATTTGAGTGCTTAAGGTCCCAACTGAATTAGCAATCAAACTTCAAAGATAGAAATAAACTCACGTGGTTCATCTTTATACATTTGCACAGGCTGAATACATGGATGTTACTACTCTATGGACCCGTATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGATGCTGAAACTGGGGAATTTCTTCATCCTTGTATTGAAGGTGCCTCTGCAAAACTTAATTTGTTACCGCATTTTGTTTGAGACTTGTTTATATGTATGCCATTAAGAACTAAATGGTAAAAAAGGTAACATAGATAAGTTAAAGATCATAGTTTCAAACTATCATCACCACTTGTTACTACTCAGGAATAGTCAGTATCACCGTCAAGTAAGATAGTTGTTTTGAAAGATTGTTCGAGATGTACGTAAATTAGTTGGTACACCTATAGTAACCCATATATAGGTTGTGTTCGATATTGAGAATATATGATTTTATTGCAATATCAGGTTAGTCTCTGAAACCGTTATCTTGTTAGATGATGGTAGATTCAGATTGTTGTTACATTTGATTATTTGAGATATACGTAAGTTGGTCTGTTTACGATTATCAAAATCTAAGTTGTTATTGAAAACCTATGATTTTGTGCAATGTTAGGGTAGTATATGAAACTTAGCTTGAATTTGTATAATTGAGGATGAAAATGGCTGTTTTATTTGTGAATGTTGTTATAACTTCTAGTCCTTTTTCCCTTGTCAGCTGCTCTCTATTTGGGTTGCACACCGAGAAGATCGTCGAAGAGTAACCGAGGTAGTAATCTGAGGGGCTACCTTAATTCCTGTACTCCACAGGTCTTAGATACATCACCCAACTTCACCAACCCCATTAGACCAACTGTTTTGAGTTCACAACATTTATCACATTGTCCAAATTTGTCAAAGCAGACGAGAAATGTACCGAAATCCGGAATGGAAAACCAAAAACATGTTGGTGTTCCTAGCACAAACCTGACTTCAACTGTATATAAGAATATCTGTCCATCGATTCGTAACAGACAGTTCCTAACAGAGACTGTTGCTGGATGGGATATGTTTTCTTTGTGTCCATTGTATCAAGGAAGAAATCAACACGTTCGTGATATCGAAATCCAACCAAATCCAGTCTACAACAATCCGAGTTTCTCTGGTCCAGCTCCATTCAAGTACTTCCATTCCAATGATGTGATTCCTCCAAGAAACAACAGAGTTGATTTGGTAAATAGTACTACTCTTCACAAGCAACAAAAAACAACTTGTGATCTATCGTTGCGGTTGGGCTCTCTCTTCGTTCCACACCCGAGCATCGACGACAATCAATCCAAGATGATCAACAACATCGATGCTAACACATCTCAAAAGCAGATCACGAGTTCGTCTGATCGCTCATTTCAACTAGACAAAACGTTCCCTTTCTTCCCTCTCCATGGTACATATGATGCATTAGATTTCCATTAGTAGTGAGAGAGCAAAGCTTCTAAATCAATTTAGATGATAGAAAGCATTCACTGGCACGATCAATCTCTTTCTATTGTTCAGTTCGATTAGCTTGTGATGTTCTTGCACGTGCTGTTAGTAACAAAGTTATAGGACCTTAGCCTTGTATCGTTTTAAGTTACCGCTATAATCGAGCTTTGTCGATTCAGTATGATCTATTGTTGAAAAGGCATTGAGATAGTAACAAAGGTCATTTGAATCATGTGAATATCTTCATGGAAGGTTGACAATCTGCATCATCATCTTCTTTATTATATTTGTTTGGTAAGAATTTGTTCAAATGTTAACACCAATGGCTTCAATGAAGATAATTAATGAGATATTTGGCTTTTAAACCTC ATGCCTCCAAGAACAGGGTGTAGGCCATTTGAGTGTGTGAGAAGAGCTTGGCATAGTGAAAGGCATCAACCCATTAGAGGATCTCTCATTCAAGAGATTTTCAGGGTTGTTAGTGAAGTTCATTGTTGTGCTACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTCGTCCTTAAAGCTGAGGAGATTTTGTATTCTAAAGCTGACTCTGAGGCTGAATACATGGATGTTACTACTCTATGGACCCGTATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGATGCTGAAACTGGGGAATTTCTTCATCCTTGTATTGAAGCTGCTCTCTATTTGGGTTGCACACCGAGAAGATCGTCGAAGAGTAACCGAGGTAGTAATCTGAGGGGCTACCTTAATTCCTGTACTCCACAGGTCTTAGATACATCACCCAACTTCACCAACCCCATTAGACCAACTGTTTTGAGTTCACAACATTTATCACATTGTCCAAATTTGTCAAAGCAGACGAGAAATGTACCGAAATCCGGAATGGAAAACCAAAAACATGTTGGTGTTCCTAGCACAAACCTGACTTCAACTGTATATAAGAATATCTGTCCATCGATTCGTAACAGACAGTTCCTAACAGAGACTGTTGCTGGATGGGATATGTTTTCTTTGTGTCCATTGTATCAAGGAAGAAATCAACACGTTCGTGATATCGAAATCCAACCAAATCCAGTCTACAACAATCCGAGTTTCTCTGGTCCAGCTCCATTCAAGTACTTCCATTCCAATGATGTGATTCCTCCAAGAAACAACAGAGTTGATTTGGTAAATAGTACTACTCTTCACAAGCAACAAAAAACAACTTGTGATCTATCGTTGCGGTTGGGCTCTCTCTTCGTTCCACACCCGAGCATCGACGACAATCAATCCAAGATGATCAACAACATCGATGCTAACACATCTCAAAAGCAGATCACGAGTTCGTCTGATCGCTCATTTCAACTAGACAAAACGTTCCCTTTCTTCCCTCTCCATGGTACATATGATGCATTAGATTTCCATTAG ATGCCTCCAAGAACAGGGTGTAGGCCATTTGAGTGTGTGAGAAGAGCTTGGCATAGTGAAAGGCATCAACCCATTAGAGGATCTCTCATTCAAGAGATTTTCAGGGTTGTTAGTGAAGTTCATTGTTGTGCTACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTCGTCCTTAAAGCTGAGGAGATTTTGTATTCTAAAGCTGACTCTGAGGCTGAATACATGGATGTTACTACTCTATGGACCCGTATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGATGCTGAAACTGGGGAATTTCTTCATCCTTGTATTGAAGCTGCTCTCTATTTGGGTTGCACACCGAGAAGATCGTCGAAGAGTAACCGAGGTAGTAATCTGAGGGGCTACCTTAATTCCTGTACTCCACAGGTCTTAGATACATCACCCAACTTCACCAACCCCATTAGACCAACTGTTTTGAGTTCACAACATTTATCACATTGTCCAAATTTGTCAAAGCAGACGAGAAATGTACCGAAATCCGGAATGGAAAACCAAAAACATGTTGGTGTTCCTAGCACAAACCTGACTTCAACTGTATATAAGAATATCTGTCCATCGATTCGTAACAGACAGTTCCTAACAGAGACTGTTGCTGGATGGGATATGTTTTCTTTGTGTCCATTGTATCAAGGAAGAAATCAACACGTTCGTGATATCGAAATCCAACCAAATCCAGTCTACAACAATCCGAGTTTCTCTGGTCCAGCTCCATTCAAGTACTTCCATTCCAATGATGTGATTCCTCCAAGAAACAACAGAGTTGATTTGGTAAATAGTACTACTCTTCACAAGCAACAAAAAACAACTTGTGATCTATCGTTGCGGTTGGGCTCTCTCTTCGTTCCACACCCGAGCATCGACGACAATCAATCCAAGATGATCAACAACATCGATGCTAACACATCTCAAAAGCAGATCACGAGTTCGTCTGATCGCTCATTTCAACTAGACAAAACGTTCCCTTTCTTCCCTCTCCATGGTACATATGATGCATTAGATTTCCATTAG MPPRTGCRPFECVRRAWHSERHQPIRGSLIQEIFRVVSEVHCCATKKNKEWQEKLPIVVLKAEEILYSKADSEAEYMDVTTLWTRINEAINTIIRLDKDAETGEFLHPCIEAALYLGCTPRRSSKSNRGSNLRGYLNSCTPQVLDTSPNFTNPIRPTVLSSQHLSHCPNLSKQTRNVPKSGMENQKHVGVPSTNLTSTVYKNICPSIRNRQFLTETVAGWDMFSLCPLYQGRNQHVRDIEIQPNPVYNNPSFSGPAPFKYFHSNDVIPPRNNRVDLVNSTTLHKQQKTTCDLSLRLGSLFVPHPSIDDNQSKMINNIDANTSQKQITSSSDRSFQLDKTFPFFPLHGTYDALDFH* Homology
BLAST of CsaV3_3G046400 vs. NCBI nr
Match: XP_011652481.1 (uncharacterized protein LOC101219225 [Cucumis sativus] >KGN60097.1 hypothetical protein Csa_002319 [Cucumis sativus]) HSP 1 Score: 741.5 bits (1913), Expect = 3.4e-210 Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. NCBI nr
Match: XP_008466415.1 (PREDICTED: uncharacterized protein LOC103503829 [Cucumis melo] >TYK31437.1 uncharacterized protein E5676_scaffold455G007480 [Cucumis melo var. makuwa]) HSP 1 Score: 681.8 bits (1758), Expect = 3.2e-192 Identity = 332/355 (93.52%), Postives = 336/355 (94.65%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. NCBI nr
Match: KAA0038814.1 (uncharacterized protein E6C27_scaffold92G003710 [Cucumis melo var. makuwa]) HSP 1 Score: 680.6 bits (1755), Expect = 7.1e-192 Identity = 332/355 (93.52%), Postives = 336/355 (94.65%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. NCBI nr
Match: XP_038899374.1 (uncharacterized protein LOC120086684 [Benincasa hispida]) HSP 1 Score: 609.8 bits (1571), Expect = 1.5e-170 Identity = 300/355 (84.51%), Postives = 316/355 (89.01%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. NCBI nr
Match: KAG7031797.1 (hypothetical protein SDJN02_05838, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 508.1 bits (1307), Expect = 6.3e-140 Identity = 257/355 (72.39%), Postives = 290/355 (81.69%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. ExPASy TrEMBL
Match: A0A0A0LHA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878170 PE=4 SV=1) HSP 1 Score: 741.5 bits (1913), Expect = 1.6e-210 Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. ExPASy TrEMBL
Match: A0A5D3E5M9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007480 PE=4 SV=1) HSP 1 Score: 681.8 bits (1758), Expect = 1.5e-192 Identity = 332/355 (93.52%), Postives = 336/355 (94.65%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. ExPASy TrEMBL
Match: A0A1S3CR62 (uncharacterized protein LOC103503829 OS=Cucumis melo OX=3656 GN=LOC103503829 PE=4 SV=1) HSP 1 Score: 681.8 bits (1758), Expect = 1.5e-192 Identity = 332/355 (93.52%), Postives = 336/355 (94.65%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. ExPASy TrEMBL
Match: A0A5A7T5Q7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003710 PE=4 SV=1) HSP 1 Score: 680.6 bits (1755), Expect = 3.4e-192 Identity = 332/355 (93.52%), Postives = 336/355 (94.65%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. ExPASy TrEMBL
Match: A0A6J1FPE4 (uncharacterized protein LOC111445784 OS=Cucurbita moschata OX=3662 GN=LOC111445784 PE=4 SV=1) HSP 1 Score: 506.9 bits (1304), Expect = 6.8e-140 Identity = 256/355 (72.11%), Postives = 290/355 (81.69%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. TAIR 10
Match: AT4G32295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 207.2 bits (526), Expect = 2.1e-53 Identity = 104/178 (58.43%), Postives = 129/178 (72.47%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. TAIR 10
Match: AT3G24150.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 193.7 bits (491), Expect = 2.5e-49 Identity = 100/190 (52.63%), Postives = 128/190 (67.37%), Query Frame = 0
BLAST of CsaV3_3G046400 vs. TAIR 10
Match: AT4G32295.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 105.1 bits (261), Expect = 1.1e-22 Identity = 59/115 (51.30%), Postives = 73/115 (63.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|