CsaV3_3G045220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G045220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein RADIALIS-like 3
Location	chr3: 36937419 .. 36939104 (-)
RNA-Seq Expression	CsaV3_3G045220
Synteny	CsaV3_3G045220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCAAGCTCTGTCACGTCGACACATGGCTTTTACTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTTTGACGAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACCGCTGAGGAAGCAAGAAGGCTTTATGAGTTACTAGTACGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTTTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGGTAATATCCAACTTGCTGAACATTTCCTCTCCGACGAAGTCACTCCAAACCCTGTGTCCTATCCTAAGTAATCTTCTCCTTTCTACTAGTACATTAGAATAAATGTCCATCACAAGAAACTTATGTCCTATAATTCCTATAGAAATATATTGAGCCGATTTTATAGCGTAGCCCGTTGTTAAATTATGGTTTAGTATGCAGAAATGTATTAACAGACTACTGACTTTTCATTTCAACAATCTATATAACATGGCACTTAAAACTTCAACTTCCCTTTTGAGGTGGATCAAGCAAAGAATCTGATAATTATCTCAAAATTAAGTTAAGAGGGAGACGGTATTAAATACTAATACAATAGGCAGTTATGATTAGGAATGAATGACTAATGAGTACGTTGATGGTGCATGAGTAGCTCTGCCTGTCATCTGAGTCACAGAAAAAATGTTGATAACAGGATATTGCAAATCTTAAGACAGGATTTATCGTAAATAACGATATAGAATAGACCTTGAAGGTTCAAAACTTGTCCACGTATCCCTTAAATGCATCCCTTCTTTTTCTAGTGGCTACCACTTGACTAAAATGCCGGGCATTCCCCTGGTCCAATGCAGATCTATCTTATTAGTCTGTGACTACGTAATTTTCTAACATTTTCCATTATCCATTCGTATATTCAACTTTCTACGCACCCCACATGATATCCAATCTCAAATGCACATGATCCCATAATTTGGAATCCACCCCCATTATGTATAATTTTGTACTATGATTATCATCTCCACCGCTCCCATCTTATCTTACCCTTAATTTCCCCTGATTTTATATGCAGTAAAATAAGAAAATAGTCAGCATAAGTTGAATGAAAAAATGAAAAGGAAACAAACTTGTTTACACCCTCACGGAGCTCAGCTTCAGGAGAGAACAAGAAACATTTCCAATTCTCGTATCTGAGAATTGATCAACGCTAATTTTTAACACGATAACTGAATCAAATGAATTTAAAGTAGGTCCATAATCACATCAGAATACAAACCCAGAAAGATGATTAAATTAAACAAAACAAAAACAAATGAGTGTGGGACTGACTAAAAAGAATCGCTTAACATCAGCCCTTCAATTAGACCGTGCAAGGTACCAATTCAACAGGAGAGCAGATATAAAATGTATAGCGCGGTGGACAAAAGAACATGAAGGAATCAATGGGAGATGTGCGATCGTGACTTACATAAAGTGTTAATGACCTTTACAACGATGAGATAGCAGTAGGAATGACAAGATAGAGATAGGTGATTCGATTTGATAATGACTTGAACATTCGATCTGAAATAGGAACCGGGGCGTCAACAAAGAATTGAGCCGATCGTTTTGGAGAGGATTGCAGTTGCTTCTCGTAAAGCGAGGTTGA

mRNA sequence

ATGGCGTCAAGCTCTGTCACGTCGACACATGGCTTTTACTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTTTGACGAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACCGCTGAGGAAGCAAGAAGGCTTTATGAGTTACTAGTACGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTTTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGGAACCGGGGCGTCAACAAAGAATTGAGCCGATCGTTTTGGAGAGGATTGCAGTTGCTTCTCGTAAAGCGAGGTTGA

Coding sequence (CDS)

ATGGCGTCAAGCTCTGTCACGTCGACACATGGCTTTTACTCATCCTGGACCAAAAAGGAAAACAAGAAATTTGAGGAGGCATTGGCCTTCTTTGACGAGGACACACCAGACCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACCGCTGAGGAAGCAAGAAGGCTTTATGAGTTACTAGTACGAGATGTCAGAAAAATAGAAGCTGGTCAAGTCCAAATACCCCTTTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGGAACCGGGGCGTCAACAAAGAATTGAGCCGATCGTTTTGGAGAGGATTGCAGTTGCTTCTCGTAAAGCGAGGTTGA

Protein sequence

MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNRGVNKELSRSFWRGLQLLLVKRG*

Homology

[Close]

BLAST of CsaV3_3G045220 vs. NCBI nr
Match: KGN60114.2 (hypothetical protein Csa_000871 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 1.5e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
           MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1   MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61  LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNRGVNKELSRSFWRGLQLLLVKRG 119
           LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNRGVNKELSRSFWRGLQLLLVKRG
Sbjct: 61  LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQRNRGVNKELSRSFWRGLQLLLVKRG 118

[Close]

BLAST of CsaV3_3G045220 vs. NCBI nr
Match: XP_008466554.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KAA0041600.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 4.8e-44
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CsaV3_3G045220 vs. NCBI nr
Match: XP_022936283.1 (protein RADIALIS-like 3 [Cucurbita moschata] >KAG6591311.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024194.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-38
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ 94
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Sbjct: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK 94

[Close]

BLAST of CsaV3_3G045220 vs. NCBI nr
Match: XP_022155868.1 (protein RADIALIS-like 4 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-34
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGR 88
          LL RDV+KIEAGQVQIPLYKN G NGR
Sbjct: 61 LLERDVKKIEAGQVQIPLYKNTGYNGR 87

[Close]

BLAST of CsaV3_3G045220 vs. NCBI nr
Match: XP_022940511.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS T+ HGFYSSWTK+ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYE
Sbjct: 1  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNG 87
          LLVRDV KIEAGQVQIPLYKN G NG
Sbjct: 61 LLVRDVNKIEAGQVQIPLYKNVGYNG 86

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 50/85 (58.82%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS+S++S+    +SWT+KENK FE ALA +D+DTPDR+  VARAV GGK+AEE RR YE
Sbjct: 1  MASNSMSSS----ASWTRKENKLFERALATYDQDTPDRWHNVARAV-GGKSAEEVRRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCN 86
          LL+RDV  IE+G+   P Y++ G N
Sbjct: 61 LLIRDVNDIESGRYPHPNYRSNGNN 80

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.9e-17
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S      SWT K+NK FE+ALA +D+DTP+R++ VA+ V GGKT EE +R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQRNRGV 99
          LLV+D+  IE G V  P Y+ +G   NGR   +++R R +
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNM 97

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-16
Identity = 52/97 (53.61%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS S++S      SWT K+NK FE ALA +D+DTPDR+  VARAV GGKT EEA+R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK-NAGCNGRGYADQQRNR 97
          LLVRD+  IE G V  P YK   G + RG    +  R
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR 94

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy Swiss-Prot
Match: Q1G3C4 (Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-16
Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+++     SSWT +E+K+FE ALA FD+DTPDR++K+ARAV GGK+ EE +R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKN 82
          LL+RDV  IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-15
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S+    SSWT K+NK FE ALA +D+DTPDR++ VA+AV G K+AEE +R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD 92
          +LV D+  IE   V +P YK  + G   RG  D
Sbjct: 61 ILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy TrEMBL
Match: A0A5A7TE80 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00690 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy TrEMBL
Match: A0A0A0LGL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy TrEMBL
Match: A0A1S3CRN8 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 95
          LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR
Sbjct: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQR 94

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy TrEMBL
Match: A0A6J1FCU5 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111442950 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MASSSVTS-THGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLY 60
          MASSSVTS   GFYSSWTKKENKKFEEALA++D+DTPDRFEKVARAVGGGKTAEEARRLY
Sbjct: 1  MASSSVTSAARGFYSSWTKKENKKFEEALAYYDQDTPDRFEKVARAVGGGKTAEEARRLY 60

Query: 61 ELLVRDVRKIEAGQVQIPLYKNAGCNGRGYADQQ 94
          ELLVRDV+KIEAGQVQIPLYKN GCNGRGYADQ+
Sbjct: 61 ELLVRDVKKIEAGQVQIPLYKNVGCNGRGYADQK 94

[Close]

BLAST of CsaV3_3G045220 vs. ExPASy TrEMBL
Match: A0A6J1DP29 (protein RADIALIS-like 4 OS=Momordica charantia OX=3673 GN=LOC111022857 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSSVTS  GFYSSWTK+ENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYE
Sbjct: 1  MASSSVTSARGFYSSWTKRENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGR 88
          LL RDV+KIEAGQVQIPLYKN G NGR
Sbjct: 61 LLERDVKKIEAGQVQIPLYKNTGYNGR 87

[Close]

BLAST of CsaV3_3G045220 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 87.8 bits (216), Expect = 6.3e-18
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S      SWT K+NK FE+ALA +D+DTP+R++ VA+ V GGKT EE +R YE
Sbjct: 1  MASSSMSSQSS--GSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAG--CNGRGYADQQRNRGV 99
          LLV+D+  IE G V  P Y+ +G   NGR   +++R R +
Sbjct: 61 LLVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNM 97

[Close]

BLAST of CsaV3_3G045220 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-17
Identity = 52/97 (53.61%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS S++S      SWT K+NK FE ALA +D+DTPDR+  VARAV GGKT EEA+R Y+
Sbjct: 1  MASGSMSSYGS--GSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK-NAGCNGRGYADQQRNR 97
          LLVRD+  IE G V  P YK   G + RG    +  R
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR 94

[Close]

BLAST of CsaV3_3G045220 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-17
Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS+++     SSWT +E+K+FE ALA FD+DTPDR++K+ARAV GGK+ EE +R YE
Sbjct: 1  MASSSMST-----SSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYE 60

Query: 61 LLVRDVRKIEAGQVQIPLYKN 82
          LL+RDV  IE+G+   P Y+N
Sbjct: 61 LLLRDVNDIESGRYPQPRYRN 75

[Close]

BLAST of CsaV3_3G045220 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MASSS++S+    SSWT K+NK FE ALA +D+DTPDR++ VA+AV G K+AEE +R Y+
Sbjct: 1  MASSSMSSS----SSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYK--NAGCNGRGYAD 92
          +LV D+  IE   V +P YK  + G   RG  D
Sbjct: 61 ILVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDD 88

[Close]

BLAST of CsaV3_3G045220 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 1  MASSSVTSTHGFYSSWTKKENKKFEEALAFFDEDTPDRFEKVARAVGGGKTAEEARRLYE 60
          MAS+S +S     S WT  +NK FE ALA +D+DTPDR+  VA+AV GGKT EE +R Y+
Sbjct: 1  MASNSRSS----ISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVRDVRKIEAGQVQIPLYKNAGCNGRGYAD 92
          +LV D+  IE G+V +P YK    N R   D
Sbjct: 61 ILVEDLINIETGRVPLPNYKTFESNSRSIND 86

The following BLAST results are available for this feature:

BLAST of CsaV3_3G045220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60114.2	1.5e-58	100.00	hypothetical protein Csa_000871 [Cucumis sativus]	[more]
XP_008466554.1	4.8e-44	100.00	PREDICTED: protein RADIALIS-like 4 [Cucumis melo] >KAA0041600.1 protein RADIALIS...	[more]
XP_022936283.1	3.0e-38	90.43	protein RADIALIS-like 3 [Cucurbita moschata] >KAG6591311.1 Protein RADIALIS-like...	[more]
XP_022155868.1	2.7e-34	89.66	protein RADIALIS-like 4 [Momordica charantia]	[more]
XP_022940511.1	5.0e-33	87.21	protein RADIALIS-like 3 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G045220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNN0	1.4e-17	58.82	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
F4JVB8	8.9e-17	50.00	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	2.0e-16	53.61	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q1G3C4	3.4e-16	58.02	Protein RADIALIS-like 4 OS=Arabidopsis thaliana OX=3702 GN=RL4 PE=2 SV=1	[more]
Q8GW75	2.9e-15	51.61	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of CsaV3_3G045220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE80	2.3e-44	100.00	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LGL4	2.3e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857080 PE=4 SV=1	[more]
A0A1S3CRN8	2.3e-44	100.00	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103503940 PE=4 SV=1	[more]
A0A6J1FCU5	1.5e-38	90.43	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111442950 PE=4 SV=1	[more]
A0A6J1DP29	1.3e-34	89.66	protein RADIALIS-like 4 OS=Momordica charantia OX=3673 GN=LOC111022857 PE=4 SV=1	[more]

BLAST of CsaV3_3G045220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	6.3e-18	50.00	RAD-like 1	[more]
AT2G21650.1	1.4e-17	53.61	Homeodomain-like superfamily protein	[more]
AT2G18328.1	2.4e-17	58.02	RAD-like 4	[more]
AT1G19510.1	2.0e-16	51.61	RAD-like 5	[more]
AT1G75250.1	1.7e-15	50.55	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 8..76 e-value: 1.2E-17 score: 65.4
None	No IPR available	PANTHER	PTHR43952:SF51	SUBFAMILY NOT NAMED	coord: 1..82
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..82
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G045220.1	CsaV3_3G045220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity