CsaV3_3G044220 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAGGGTTGTAATTTAGAGCGAAGATTAAGGGCAGTTCCCCTAATATAAGGAAATTGTACTTTCCCCTTCTCCTTCCCCTCCTTTTATTCTTCGGCATTTCTTTCGGAATGAACAGATGAAAGGGAGAAGGAAGAACTAGAAAGAGAAGAAAAAATCAGCGGCTGAAAAATCAAAGAGGGTTATAAGAATACCATCCACAACAACATCAAAGACTGAATCTGAGATTTCCAACAACACACCAAAAATGATTAAGTGTGAGCTATGTGGGCATCAAGCCAGGATGTTCTGCGAGTCCGATCAAGCTAACCTCTGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAACATTCTCGGACCCTTCTTTGTCATGTGTGCCAGTCGCCGACTCCATGGGCCGCCTCTGGTCGGAAACTTACACCCACCGTTTCTGTGTGTGAGGGATGTGTTCAAGTCCATGATGGTAAATGCGACCAGGAGCGTCGTAGGGAAAACGAGGTGGAAGTTGATGACGGCGATGATTTTGTCGATGATGAAGGATTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGAAGAGGATGACGATGAGGAAGAAGACGATGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCCTATGCATCTTCTTCATCACCACCGCCGCCTCCGACAGTGACTTCTAGCAGCGAGGGTGAGATTTCAGCCGGCGCTGGTGTCGCCTCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGTATGTATTTTTTAGGTTTTGTTTTCTCGCTATTGCCTTTTCTTCTGTGTTATCTTTTTCCTTAGTCTGTGTTGAAGGAATTCGTTCGGGATTTCGGAATTTCTTGTTCATTCATTCGCTCTTCTGGAACCGTTGTTTTGATTAATACATCAAAAATCCACGGTTTTCACTTCTCCAAGTGAATCTGACTCAAGATTTAGACCGAATCATTATGTTATATTACCTTTTTAACCTATGATTTTGATACGAATTGTGACTAATATGCCGATCTGAAACATAGTTTTCATTTTTCTTAGTTGTTAAGTTTCCAGTGATCCAAATAGGGTTTTTAATAATATTTTACCACTTGAATGCAGGATGAAATCGAGTCTTGTTCTGCACCACAGAGTACAAGGCCATTTTTCAACGACGAAGCAACATCGTCAAGTTCCCTTAGGCCACTAAAGCAAGCAAGAGTTACAGGACCGACCCAATCAATCACATCCACTCCAGATGATGAAGCTTGTAAAGCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCGTCTTCCCACCGACATTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGATTCTTCACTAACCACACAAATGGAAGGTAGCTAGGGTTCTTAATTATTTTTTCTTTTTTTTCCTTTTGGGGTTTCATTTTTCTCACTAATTGTCTGTCATGATCGATTAATTCAAGGATTATACCTGTTATCTCAACCGTGTACAACCTAGAATTTCCCCGCTCTATTTTCCATTAGATCATCTTGTCATCATTTGTGAAGCCTGTCATGTGTAGCCAGATATTAATTTACATTCTATTAACAGATTTCTCTCTACACTTTTGTGAGTGTTTTCTCGATGCAATATCTCAGTAAATATTTGTTAGTTGTTTGTTAAAGGGGGAGGTTCTGGCATTCTAGTTGCTGTGTTTTTATGTGGGTCTCCCATGACCAGAAGAGATGTATTCATATATAATACATGTGTAAAACCCATATCCCCATATCTCTTTTGGGAGCCATTTTTAGGTCCAGTAAGCCGCTTTTTGGATTTTTTTGCATATTGAAGATGATGCCCAATACCGAACTGAAAGGTAATCGCAATCAATCATATATATCTTGATATTATTTAATGTTCTTGAATTTTCATGTTGGAGCTGTTTATGATTAGAATAGCAAGATCGTGGCCGACCGTGCGTTTGATGGAATCTTCATTTCTATATTTAACTCCCAGCTACATTCATATAATACATGTATACAATTGAGGTAGTATTTGTATAGATGGTCTGTGTTTATTCTTCAAACCTTGGCTAGGGTTTGATGAAGAAATGATGGTTGTTTTGAGTTGCCGATTGCTGTTGGGTCAAATTAATGAAGTGATTGGAATATTGAGTGGTTCACATCCTCTTAACTATCTAGACTTCCCTGTTCAAAACCATGACTACATTCAGGCCACGGGTTGACTACAAATTCCTTGATGTTAACTGATAATAGTGAGGAAATAATATCCACGATACCCATTTACTTTTTGTAAAACCATCTTGGCCATAAGTTCTGATAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTTGCCACTTAGAATTTAGAATTTTTCTTTGCCACTCGTTTAATTGAAGTAGGATGGCTTGTAAATATCAGCTTCCCAAGCCCCACTTGTGTGGCTGAATGTTGGCGTATTTTATTTTAAGCAATGTCTTTGATATATGAGACAAGCAGGCCAAAGATTGGTGGATGGTTATGGTCAAATGTTAGGTATATGTAATTTCTCTTTTGAAAAAAACAATAATAAATTAGAAACGAAGGAATTATTGTGG ATGATTAAGTGTGAGCTATGTGGGCATCAAGCCAGGATGTTCTGCGAGTCCGATCAAGCTAACCTCTGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAACATTCTCGGACCCTTCTTTGTCATGTGTGCCAGTCGCCGACTCCATGGGCCGCCTCTGGTCGGAAACTTACACCCACCGTTTCTGTGTGTGAGGGATGTGTTCAAGTCCATGATGGTAAATGCGACCAGGAGCGTCGTAGGGAAAACGAGGTGGAAGTTGATGACGGCGATGATTTTGTCGATGATGAAGGATTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGAAGAGGATGACGATGAGGAAGAAGACGATGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCCTATGCATCTTCTTCATCACCACCGCCGCCTCCGACAGTGACTTCTAGCAGCGAGGGTGAGATTTCAGCCGGCGCTGGTGTCGCCTCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGATGAAATCGAGTCTTGTTCTGCACCACAGAGTACAAGGCCATTTTTCAACGACGAAGCAACATCGTCAAGTTCCCTTAGGCCACTAAAGCAAGCAAGAGTTACAGGACCGACCCAATCAATCACATCCACTCCAGATGATGAAGCTTGTAAAGCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCGTCTTCCCACCGACATTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA ATGATTAAGTGTGAGCTATGTGGGCATCAAGCCAGGATGTTCTGCGAGTCCGATCAAGCTAACCTCTGTTGGGACTGCGATGAGAAGGTTCACTGTGCTAATTTTCTCGTTGCTAAACATTCTCGGACCCTTCTTTGTCATGTGTGCCAGTCGCCGACTCCATGGGCCGCCTCTGGTCGGAAACTTACACCCACCGTTTCTGTGTGTGAGGGATGTGTTCAAGTCCATGATGGTAAATGCGACCAGGAGCGTCGTAGGGAAAACGAGGTGGAAGTTGATGACGGCGATGATTTTGTCGATGATGAAGGATTCGATAGTTATGAGGGAGGTGATAGTGAGGAAGACGATGATGGGGAAGAGGATGACGATGAGGAAGAAGACGATGAGGACGGAGAAAACCAGGTGGTGCCCTGGTCCTATGCATCTTCTTCATCACCACCGCCGCCTCCGACAGTGACTTCTAGCAGCGAGGGTGAGATTTCAGCCGGCGCTGGTGTCGCCTCGAAGCGGATGAGAGAATACGGCGTCGATCTCGATTCCGATGATGAAATCGAGTCTTGTTCTGCACCACAGAGTACAAGGCCATTTTTCAACGACGAAGCAACATCGTCAAGTTCCCTTAGGCCACTAAAGCAAGCAAGAGTTACAGGACCGACCCAATCAATCACATCCACTCCAGATGATGAAGCTTGTAAAGCCGAGTTAAAATCCACGGCTGTCGTTAGATCTATCCAGAGACTCCAGAATCGTCTTCCCACCGACATTAACGATGCTTCCAAAATGATCTTTGGGATATGCAAAATGAGCAGAGATCAGAATCGTTGA MIKCELCGHQARMFCESDQANLCWDCDEKVHCANFLVAKHSRTLLCHVCQSPTPWAASGRKLTPTVSVCEGCVQVHDGKCDQERRRENEVEVDDGDDFVDDEGFDSYEGGDSEEDDDGEEDDDEEEDDEDGENQVVPWSYASSSSPPPPPTVTSSSEGEISAGAGVASKRMREYGVDLDSDDEIESCSAPQSTRPFFNDEATSSSSLRPLKQARVTGPTQSITSTPDDEACKAELKSTAVVRSIQRLQNRLPTDINDASKMIFGICKMSRDQNR* Homology
BLAST of CsaV3_3G044220 vs. NCBI nr
Match: XP_004146838.1 (zinc finger protein CONSTANS-LIKE 4 [Cucumis sativus] >KGN59860.1 hypothetical protein Csa_002023 [Cucumis sativus]) HSP 1 Score: 538.5 bits (1386), Expect = 3.4e-149 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. NCBI nr
Match: XP_008454616.1 (PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Cucumis melo] >KAA0036743.1 zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa] >TYJ95810.1 zinc finger protein CONSTANS-LIKE 4 [Cucumis melo var. makuwa]) HSP 1 Score: 518.1 bits (1333), Expect = 4.7e-143 Identity = 262/274 (95.62%), Postives = 269/274 (98.18%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. NCBI nr
Match: XP_038899463.1 (nucleolin [Benincasa hispida]) HSP 1 Score: 471.1 bits (1211), Expect = 6.6e-129 Identity = 246/284 (86.62%), Postives = 259/284 (91.20%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. NCBI nr
Match: XP_022139730.1 (protein BFR2 [Momordica charantia]) HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122 Identity = 235/282 (83.33%), Postives = 254/282 (90.07%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. NCBI nr
Match: XP_023535120.1 (protein BFR2-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 444.5 bits (1142), Expect = 6.6e-121 Identity = 234/279 (83.87%), Postives = 251/279 (89.96%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy Swiss-Prot
Match: Q9LUA9 (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=COL10 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09 Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy Swiss-Prot
Match: Q9SSE5 (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana OX=3702 GN=COL9 PE=1 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 7.1e-09 Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 9.3e-09 Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy Swiss-Prot
Match: Q9LJB7 (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08 Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy Swiss-Prot
Match: O23379 (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=COL11 PE=1 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08 Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy TrEMBL
Match: A0A0A0LCX6 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G850640 PE=4 SV=1) HSP 1 Score: 538.5 bits (1386), Expect = 1.6e-149 Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy TrEMBL
Match: A0A5D3B734 (Zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00930 PE=4 SV=1) HSP 1 Score: 518.1 bits (1333), Expect = 2.3e-143 Identity = 262/274 (95.62%), Postives = 269/274 (98.18%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy TrEMBL
Match: A0A1S3BZT7 (zinc finger protein CONSTANS-LIKE 4 OS=Cucumis melo OX=3656 GN=LOC103494983 PE=4 SV=1) HSP 1 Score: 518.1 bits (1333), Expect = 2.3e-143 Identity = 262/274 (95.62%), Postives = 269/274 (98.18%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy TrEMBL
Match: A0A6J1CD44 (protein BFR2 OS=Momordica charantia OX=3673 GN=LOC111010576 PE=4 SV=1) HSP 1 Score: 449.5 bits (1155), Expect = 1.0e-122 Identity = 235/282 (83.33%), Postives = 254/282 (90.07%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. ExPASy TrEMBL
Match: A0A6J1IMI6 (protein BFR2 OS=Cucurbita maxima OX=3661 GN=LOC111476916 PE=4 SV=1) HSP 1 Score: 437.6 bits (1124), Expect = 3.9e-119 Identity = 231/279 (82.80%), Postives = 250/279 (89.61%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein ) HSP 1 Score: 153.7 bits (387), Expect = 2.2e-37 Identity = 102/211 (48.34%), Postives = 125/211 (59.24%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein ) HSP 1 Score: 113.2 bits (282), Expect = 3.3e-25 Identity = 91/205 (44.39%), Postives = 115/205 (56.10%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. TAIR 10
Match: AT5G48250.1 (B-box type zinc finger protein with CCT domain ) HSP 1 Score: 65.5 bits (158), Expect = 7.8e-11 Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. TAIR 10
Match: AT3G07650.1 (CONSTANS-like 9 ) HSP 1 Score: 62.8 bits (151), Expect = 5.1e-10 Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 0
BLAST of CsaV3_3G044220 vs. TAIR 10
Match: AT3G07650.2 (CONSTANS-like 9 ) HSP 1 Score: 62.8 bits (151), Expect = 5.1e-10 Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|