CsaV3_3G043760 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G043760
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	nucleolin 1
Location	chr3: 35629024 .. 35630989 (+)
RNA-Seq Expression	CsaV3_3G043760
Synteny	CsaV3_3G043760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTCAAGAAATTGTACATAAAAGAAAATACAAATCTAGAGATGAGCTTAATTAACTAACATTTGTACATTTCTAAAAACAAAAAAGTTATTCAAATTCAAATCTTCCCGTGAAAGTTTTACATTTTTAAAAGGAAAGTATGTAAAGTTATGAAACGACATGTCGTCAGGCGCTCGGTGGGCTACACGTCGTGTGGAACAGCTTGAAGACACCGGTCGGCTACGGCGGCGCCAAAAACAGAACGTTTCCGAAATTTTAGCTTTCAAATCCTTTAGAAGCGGCATTTAAGCGATGGAAATCACCGGCGAAGACGGTTCAAAGTTAGTTCTACGAGAGCCAGTGACAGTATTCGGAAGAGGCTCAGGATTTGCTTCCAAAGATCGAACAATATCTCGTCGTCACATTTTAATTGAAGCTAAAACCTCAGAGAACACTAATGGAGCTCCCATGGAGCCTAAAGTTTCCTTCGAGGTCATCGGTAGGAACCCTATCTGGGTTCGGAGCAGCAAAAATGGCGAAATCAGAACATTTAAAAGATCGGAAAAGGGCGAGATGGCGCCTGGTGAGTCGTTCTGCGTGGGTGGGCAAGAACCAATTTGGTTCGAATTAAACAAGATCGCTGAATTCGAAGAAGGGAAGCAAGTTTTTTCGCGTTCTTCTGATTCAGATGATATCGATGTTTCTGGCATTGATCCCGTCAAAGGTTTTTTCCCGAAAACCTATATAATTTTCCTTATTAACTTTGGAGAAAAGTAATCGAAATCGTCACTTTTCCAGGTTGTTACCAAATTACGCCTAGGATTTTGATATCGAAAAGTAAAATTAGGCGATACTACTAAGTAAACAAACGATATAACTGTTTTAGGAGTTTCAAATTGCGAGTCAATGATACTGATTGTTCTTACTTTGGTTTTCTTGTAATGGGACACGAATTTGAATCCTGACTAATGTTTGCTCTCGAAAATCTTTCTAGTTTTCCTTAGAGAATTTAGAGAAAAATAATTGGAATCATCACTTTTCCAGATTGTTGCATATCCTGCGTAGGATTTTAATAGAATTAGCAGATACTTTAGAGAACAAACGAAACATTGTTTTCGAAGTTCCAAATTTTGAATCAATGATACTGATTGTTCTTACTGTTCTCATGTCAGAATTTGGTTTTCTTGTCATGGGACACGAGTTTGAATGTTATGGCAATCGGGTGATTCGTGATGTGAAAAAATGGGACTGGTTTCTGGATGGGCCGAGTAAAGACAGTGATGATGACAATGAAGATTATGAGAGGAAAAAGAAGAGAGGAGTAATCGGAAAGAGAAAAAAAGGAACAAACAGTGACGATGAAGATTGGACAGATGAGAATGAAGATGCTGTTGAAATGATTACGAAAGTACAAAAGTCTCAAAGACCCAAATACTCCACAAGATCAAAAGATCGCAATAAGATTTCTAATGATCAAAGAAAGGCTGCTAAATCTAATAAGAACTATAATGGAGAAGTTGAAGAAGATGAAGATGATGAAACTTTAGGAGGCTTTATTGTAGATGATGAAGTAGATAATGTAGAACAGATGGACGAAGATGAAGAAGAAGAAGAATTTTTAGATGATGAGGAAGATGAGGAAGATTGATGAAGCTAATTGTTATTGGCTGCTCTAACTTAGGCTTGTTCTAGAGAGTTTTGTCTTTGTACATTATTTACCTTTAGTTTCATGTTTGTGAAATATACAAGGATCAGTTTTGTGTTGTATCTCAAATTGTAGTTTGATAATCATCTTCAGAGGCCTTCTTGTAAGTTGTAGTACTCTTTTGTCTCGTGTTGTTAAGAAATTATTCGAGGAGGCCATGCGAGAGAAACCGTGAAAGTATCTTAAATTTATACTCAATAGTTAAGTATTAGCATGCAGATTTTCTTCATCAGACTTCATATTCCCAAACTCCCATTTATCTGAATTCTTGTTGTTTGCCC

mRNA sequence

ATGGAAATCACCGGCGAAGACGGTTCAAAGTTAGTTCTACGAGAGCCAGTGACAGTATTCGGAAGAGGCTCAGGATTTGCTTCCAAAGATCGAACAATATCTCGTCGTCACATTTTAATTGAAGCTAAAACCTCAGAGAACACTAATGGAGCTCCCATGGAGCCTAAAGTTTCCTTCGAGGTCATCGGTAGGAACCCTATCTGGGTTCGGAGCAGCAAAAATGGCGAAATCAGAACATTTAAAAGATCGGAAAAGGGCGAGATGGCGCCTGGTGAGTCGTTCTGCGTGGGTGGGCAAGAACCAATTTGGTTCGAATTAAACAAGATCGCTGAATTCGAAGAAGGGAAGCAAGTTTTTTCGCGTTCTTCTGATTCAGATGATATCGATGTTTCTGGCATTGATCCCGTCAAAGAATTTGGTTTTCTTGTCATGGGACACGAGTTTGAATGTTATGGCAATCGGGTGATTCGTGATGTGAAAAAATGGGACTGGTTTCTGGATGGGCCGAGTAAAGACAGTGATGATGACAATGAAGATTATGAGAGGAAAAAGAAGAGAGGAGTAATCGGAAAGAGAAAAAAAGGAACAAACAGTGACGATGAAGATTGGACAGATGAGAATGAAGATGCTGTTGAAATGATTACGAAAGTACAAAAGTCTCAAAGACCCAAATACTCCACAAGATCAAAAGATCGCAATAAGATTTCTAATGATCAAAGAAAGGCTGCTAAATCTAATAAGAACTATAATGGAGAAGTTGAAGAAGATGAAGATGATGAAACTTTAGGAGGCTTTATTGTAGATGATGAAGTAGATAATGTAGAACAGATGGACGAAGATGAAGAAGAAGAAGAATTTTTAGATGATGAGGAAGATGAGGAAGATTGA

Coding sequence (CDS)

ATGGAAATCACCGGCGAAGACGGTTCAAAGTTAGTTCTACGAGAGCCAGTGACAGTATTCGGAAGAGGCTCAGGATTTGCTTCCAAAGATCGAACAATATCTCGTCGTCACATTTTAATTGAAGCTAAAACCTCAGAGAACACTAATGGAGCTCCCATGGAGCCTAAAGTTTCCTTCGAGGTCATCGGTAGGAACCCTATCTGGGTTCGGAGCAGCAAAAATGGCGAAATCAGAACATTTAAAAGATCGGAAAAGGGCGAGATGGCGCCTGGTGAGTCGTTCTGCGTGGGTGGGCAAGAACCAATTTGGTTCGAATTAAACAAGATCGCTGAATTCGAAGAAGGGAAGCAAGTTTTTTCGCGTTCTTCTGATTCAGATGATATCGATGTTTCTGGCATTGATCCCGTCAAAGAATTTGGTTTTCTTGTCATGGGACACGAGTTTGAATGTTATGGCAATCGGGTGATTCGTGATGTGAAAAAATGGGACTGGTTTCTGGATGGGCCGAGTAAAGACAGTGATGATGACAATGAAGATTATGAGAGGAAAAAGAAGAGAGGAGTAATCGGAAAGAGAAAAAAAGGAACAAACAGTGACGATGAAGATTGGACAGATGAGAATGAAGATGCTGTTGAAATGATTACGAAAGTACAAAAGTCTCAAAGACCCAAATACTCCACAAGATCAAAAGATCGCAATAAGATTTCTAATGATCAAAGAAAGGCTGCTAAATCTAATAAGAACTATAATGGAGAAGTTGAAGAAGATGAAGATGATGAAACTTTAGGAGGCTTTATTGTAGATGATGAAGTAGATAATGTAGAACAGATGGACGAAGATGAAGAAGAAGAAGAATTTTTAGATGATGAGGAAGATGAGGAAGATTGA

Protein sequence

MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFEVIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDYERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQRKAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED*

Homology

[Close]

BLAST of CsaV3_3G043760 vs. NCBI nr
Match: XP_004146848.1 (nucleolin 1 [Cucumis sativus] >KGN59809.1 hypothetical protein Csa_000774 [Cucumis sativus])

HSP 1 Score: 575.1 bits (1481), Expect = 3.5e-160
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE
Sbjct: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
           ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR
Sbjct: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 296
           KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED
Sbjct: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 295

[Close]

BLAST of CsaV3_3G043760 vs. NCBI nr
Match: XP_008447630.1 (PREDICTED: nucleolin 1 [Cucumis melo] >TYK03672.1 nucleolin 1 [Cucumis melo var. makuwa])

HSP 1 Score: 540.4 bits (1391), Expect = 9.6e-150
Identity = 278/295 (94.24%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEI GEDGSKLVLREPVT+FGRGSGFASKDRTISRRHILIEAKTS+NTNGAPMEPKVSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIGRNPIWVRSSKNGEIRTF+RSEKG+MAPGESFCVGGQEPIWFELNKI EFEEGK V S
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLVSS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDS DD+EDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSHDDDEDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
           ERKKKRGV GKRKKG NSDDEDWTDENEDAV+MITKVQKSQRPKYSTRSKDRNKISNDQR
Sbjct: 181 ERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDRNKISNDQR 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 296
           KAAKSNK+Y+GEVEEDEDDETLGGFIVDDEVDNVEQMDED EEEEFLDDE+DEED
Sbjct: 241 KAAKSNKDYDGEVEEDEDDETLGGFIVDDEVDNVEQMDED-EEEEFLDDEDDEED 294

[Close]

BLAST of CsaV3_3G043760 vs. NCBI nr
Match: KAA0036698.1 (nucleolin 1 [Cucumis melo var. makuwa])

HSP 1 Score: 540.0 bits (1390), Expect = 1.2e-149
Identity = 277/295 (93.90%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEI GEDGSKL+LREPVT+FGRGSGFASKDRTISRRHILIEAKTS+NTNGAPMEPKVSFE
Sbjct: 1   MEIAGEDGSKLILREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIGRNPIWVRSSKNGEIRTF+RSEKG+MAPGESFCVGGQEPIWFELNKI EFEEGK V S
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLVSS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDS DD+EDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSHDDDEDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
           ERKKKRGV GKRKKG NSDDEDWTDENEDAV+MITKVQKSQRPKYSTRSKDRNKISNDQR
Sbjct: 181 ERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDRNKISNDQR 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 296
           KAAKSNK+Y+GEVEEDEDDETLGGFIVDDEVDNVEQMDED EEEEFLDDE+DEED
Sbjct: 241 KAAKSNKDYDGEVEEDEDDETLGGFIVDDEVDNVEQMDED-EEEEFLDDEDDEED 294

[Close]

BLAST of CsaV3_3G043760 vs. NCBI nr
Match: XP_038898830.1 (protein PIF [Benincasa hispida])

HSP 1 Score: 490.0 bits (1260), Expect = 1.5e-134
Identity = 256/297 (86.20%), Postives = 271/297 (91.25%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEI GEDGSKLVLREPVT+FGRGSGFASKDRT+SRRHILIEAKTSEN+NGAP+EP VSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFASKDRTVSRRHILIEAKTSENSNGAPIEPTVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIGRNPIWVRSSKNGEIRTF+RSEKGEMA GESFCVG QEPIWFELNKIAEFEE KQ FS
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGEMALGESFCVGSQEPIWFELNKIAEFEERKQFFS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDS DIDVSGIDPVKEFGFL MGHEFECYGNRVIRD KKWDWFLD P KDSDDD EDY
Sbjct: 121 RSSDSVDIDVSGIDPVKEFGFLAMGHEFECYGNRVIRDPKKWDWFLDEPRKDSDDD-EDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
            RKKKRGV GKRKKG NSDDEDWTDENEDAVEMITK +K +RPKYSTRSKDR+K  NDQ+
Sbjct: 181 GRKKKRGVKGKRKKGANSDDEDWTDENEDAVEMITKTKKFRRPKYSTRSKDRHKTPNDQK 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQM----DEDEEEEEFLDDEEDE 294
           KAA+SNK+Y+ EVEEDEDDETLGGFIVDDE DNVEQM    DEDEEEEEF DD+E++
Sbjct: 241 KAARSNKDYDEEVEEDEDDETLGGFIVDDEEDNVEQMDEDEDEDEEEEEFSDDDEED 296

[Close]

BLAST of CsaV3_3G043760 vs. NCBI nr
Match: XP_022980683.1 (protein BFR2 [Cucurbita maxima])

HSP 1 Score: 467.2 bits (1201), Expect = 1.0e-127
Identity = 240/293 (81.91%), Postives = 262/293 (89.42%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEI GEDGSKLVLREPVT+FGRGSGFA KDRT+SR HILI+AKTSEN+NG PMEP+VSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFACKDRTVSRCHILIKAKTSENSNGVPMEPRVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIG+NPIWVRS KNGEIRTF+ SEKGEM PGESFC+GGQEP+WF+LNKIAEFEEG+++ S
Sbjct: 61  VIGKNPIWVRSGKNGEIRTFRSSEKGEMVPGESFCMGGQEPMWFQLNKIAEFEEGEKICS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFL  GHEFECYGNRVIRD KKWDWFLD   KDSDD+ EDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLAKGHEFECYGNRVIRDAKKWDWFLDERRKDSDDE-EDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
            RK+K  V GKRKKG N+DDEDWTDENEDAVEMITK +K QRPKYSTRSKDRNK   DQ+
Sbjct: 181 GRKQKSRVRGKRKKGANNDDEDWTDENEDAVEMITKTKKFQRPKYSTRSKDRNKTHKDQK 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDE 294
           KAAKSNK+Y   VEEDEDDETLGGFIVDDEVDN E MDEDE+EEEF DD+ED+
Sbjct: 241 KAAKSNKDY---VEEDEDDETLGGFIVDDEVDNEELMDEDEDEEEFSDDKEDD 289

[Close]

BLAST of CsaV3_3G043760 vs. ExPASy TrEMBL
Match: A0A0A0LFR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848190 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.7e-160
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE
Sbjct: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
           ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR
Sbjct: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 296
           KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED
Sbjct: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 295

[Close]

BLAST of CsaV3_3G043760 vs. ExPASy TrEMBL
Match: A0A5D3BXV5 (Nucleolin 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00290 PE=4 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 4.6e-150
Identity = 278/295 (94.24%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEI GEDGSKLVLREPVT+FGRGSGFASKDRTISRRHILIEAKTS+NTNGAPMEPKVSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIGRNPIWVRSSKNGEIRTF+RSEKG+MAPGESFCVGGQEPIWFELNKI EFEEGK V S
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLVSS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDS DD+EDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSHDDDEDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
           ERKKKRGV GKRKKG NSDDEDWTDENEDAV+MITKVQKSQRPKYSTRSKDRNKISNDQR
Sbjct: 181 ERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDRNKISNDQR 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 296
           KAAKSNK+Y+GEVEEDEDDETLGGFIVDDEVDNVEQMDED EEEEFLDDE+DEED
Sbjct: 241 KAAKSNKDYDGEVEEDEDDETLGGFIVDDEVDNVEQMDED-EEEEFLDDEDDEED 294

[Close]

BLAST of CsaV3_3G043760 vs. ExPASy TrEMBL
Match: A0A1S3BHB4 (nucleolin 1 OS=Cucumis melo OX=3656 GN=LOC103490042 PE=4 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 4.6e-150
Identity = 278/295 (94.24%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEI GEDGSKLVLREPVT+FGRGSGFASKDRTISRRHILIEAKTS+NTNGAPMEPKVSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIGRNPIWVRSSKNGEIRTF+RSEKG+MAPGESFCVGGQEPIWFELNKI EFEEGK V S
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLVSS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDS DD+EDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSHDDDEDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
           ERKKKRGV GKRKKG NSDDEDWTDENEDAV+MITKVQKSQRPKYSTRSKDRNKISNDQR
Sbjct: 181 ERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDRNKISNDQR 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 296
           KAAKSNK+Y+GEVEEDEDDETLGGFIVDDEVDNVEQMDED EEEEFLDDE+DEED
Sbjct: 241 KAAKSNKDYDGEVEEDEDDETLGGFIVDDEVDNVEQMDED-EEEEFLDDEDDEED 294

[Close]

BLAST of CsaV3_3G043760 vs. ExPASy TrEMBL
Match: A0A5A7T1L8 (Nucleolin 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00450 PE=4 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 6.0e-150
Identity = 277/295 (93.90%), Postives = 287/295 (97.29%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEI GEDGSKL+LREPVT+FGRGSGFASKDRTISRRHILIEAKTS+NTNGAPMEPKVSFE
Sbjct: 1   MEIAGEDGSKLILREPVTIFGRGSGFASKDRTISRRHILIEAKTSDNTNGAPMEPKVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIGRNPIWVRSSKNGEIRTF+RSEKG+MAPGESFCVGGQEPIWFELNKI EFEEGK V S
Sbjct: 61  VIGRNPIWVRSSKNGEIRTFRRSEKGKMAPGESFCVGGQEPIWFELNKITEFEEGKLVSS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDS DD+EDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSHDDDEDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
           ERKKKRGV GKRKKG NSDDEDWTDENEDAV+MITKVQKSQRPKYSTRSKDRNKISNDQR
Sbjct: 181 ERKKKRGVRGKRKKGANSDDEDWTDENEDAVQMITKVQKSQRPKYSTRSKDRNKISNDQR 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEED 296
           KAAKSNK+Y+GEVEEDEDDETLGGFIVDDEVDNVEQMDED EEEEFLDDE+DEED
Sbjct: 241 KAAKSNKDYDGEVEEDEDDETLGGFIVDDEVDNVEQMDED-EEEEFLDDEDDEED 294

[Close]

BLAST of CsaV3_3G043760 vs. ExPASy TrEMBL
Match: A0A6J1J012 (protein BFR2 OS=Cucurbita maxima OX=3661 GN=LOC111479979 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 5.0e-128
Identity = 240/293 (81.91%), Postives = 262/293 (89.42%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPVTVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSFE 60
           MEI GEDGSKLVLREPVT+FGRGSGFA KDRT+SR HILI+AKTSEN+NG PMEP+VSFE
Sbjct: 1   MEIAGEDGSKLVLREPVTIFGRGSGFACKDRTVSRCHILIKAKTSENSNGVPMEPRVSFE 60

Query: 61  VIGRNPIWVRSSKNGEIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQVFS 120
           VIG+NPIWVRS KNGEIRTF+ SEKGEM PGESFC+GGQEP+WF+LNKIAEFEEG+++ S
Sbjct: 61  VIGKNPIWVRSGKNGEIRTFRSSEKGEMVPGESFCMGGQEPMWFQLNKIAEFEEGEKICS 120

Query: 121 RSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNEDY 180
           RSSDSDDIDVSGIDPVKEFGFL  GHEFECYGNRVIRD KKWDWFLD   KDSDD+ EDY
Sbjct: 121 RSSDSDDIDVSGIDPVKEFGFLAKGHEFECYGNRVIRDAKKWDWFLDERRKDSDDE-EDY 180

Query: 181 ERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISNDQR 240
            RK+K  V GKRKKG N+DDEDWTDENEDAVEMITK +K QRPKYSTRSKDRNK   DQ+
Sbjct: 181 GRKQKSRVRGKRKKGANNDDEDWTDENEDAVEMITKTKKFQRPKYSTRSKDRNKTHKDQK 240

Query: 241 KAAKSNKNYNGEVEEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDE 294
           KAAKSNK+Y   VEEDEDDETLGGFIVDDEVDN E MDEDE+EEEF DD+ED+
Sbjct: 241 KAAKSNKDY---VEEDEDDETLGGFIVDDEVDNEELMDEDEDEEEFSDDKEDD 289

[Close]

BLAST of CsaV3_3G043760 vs. TAIR 10
Match: AT3G13780.1 (SMAD/FHA domain-containing protein )

HSP 1 Score: 218.4 bits (555), Expect = 7.7e-57
Identity = 132/301 (43.85%), Postives = 199/301 (66.11%), Query Frame = 0


Query: 1   MEITGEDGSKLVLREPV-TVFGRGSGFASKDRTISRRHILIEAKTSENTNGAPMEPKVSF 60
           MEI GEDG+KL L+  V  VFGRG+GF ++D T+SRRH+ +  K +    G      VSF
Sbjct: 14  MEIEGEDGTKLFLKTGVKDVFGRGAGFNTEDLTVSRRHVSLVFKPA--AAGTEPSDMVSF 73

Query: 61  EVIGRNPIWVRSSKNG-EIRTFKRSEKGEMAPGESFCVGGQEPIWFELNKIAEFEEGKQV 120
           EV+GRNP+W+R+ + G +I+T ++ E GE+A G+ FCV G  PIWF L +  E  E    
Sbjct: 74  EVLGRNPVWIRAVEKGKKIQTLRKPETGEIATGDQFCVSGNHPIWFTLKRRDEVME---- 133

Query: 121 FSRSSDSDDIDVSGIDPVKEFGFLVMGHEFECYGNRVIRDVKKWDWFLDGPSKDSDDDNE 180
             R+ D  +I+++ IDPVKEFGFLV+G EF+ Y    +RD+K+W+WFL+  +  + D +E
Sbjct: 134 -ERALDHGEIELN-IDPVKEFGFLVIGKEFDQYPKSRVRDIKQWEWFLEDSTNGNSDGDE 193

Query: 181 DYERKKKRGVIGKRKKGTNSDDEDWTDENEDAVEMITKVQKSQRPKYSTRSKDRNKISN- 240
           D ++K ++G+  KR++   ++D+DW+ E+++  E++ K ++   P YSTRSK   K SN 
Sbjct: 194 DGDKKGRKGLGKKRRRKKGNEDDDWSVESDEDKELMVKSKRVVTPTYSTRSKKTKKDSNA 253

Query: 241 --DQRKAAKSNKNYNGEV-EEDEDDETLGGFIVDDEVDNVEQMDEDEEEEEFLDDEEDEE 296
                  A++ +    +V EED+DDETLGGFIV DE   +E+ +E+EE+E  +DDEEDE+
Sbjct: 254 SSSSSNGAQTKQRGRADVEEEDDDDETLGGFIVSDEEAKLEE-EEEEEDESDVDDEEDED 305

The following BLAST results are available for this feature:

BLAST of CsaV3_3G043760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146848.1	3.5e-160	100.00	nucleolin 1 [Cucumis sativus] >KGN59809.1 hypothetical protein Csa_000774 [Cucum...	[more]
XP_008447630.1	9.6e-150	94.24	PREDICTED: nucleolin 1 [Cucumis melo] >TYK03672.1 nucleolin 1 [Cucumis melo var....	[more]
KAA0036698.1	1.2e-149	93.90	nucleolin 1 [Cucumis melo var. makuwa]	[more]
XP_038898830.1	1.5e-134	86.20	protein PIF [Benincasa hispida]	[more]
XP_022980683.1	1.0e-127	81.91	protein BFR2 [Cucurbita maxima]	[more]

BLAST of CsaV3_3G043760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G043760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFR7	1.7e-160	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848190 PE=4 SV=1	[more]
A0A5D3BXV5	4.6e-150	94.24	Nucleolin 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00290 PE...	[more]
A0A1S3BHB4	4.6e-150	94.24	nucleolin 1 OS=Cucumis melo OX=3656 GN=LOC103490042 PE=4 SV=1	[more]
A0A5A7T1L8	6.0e-150	93.90	Nucleolin 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00450 PE...	[more]
A0A6J1J012	5.0e-128	81.91	protein BFR2 OS=Cucurbita maxima OX=3661 GN=LOC111479979 PE=4 SV=1	[more]

BLAST of CsaV3_3G043760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13780.1	7.7e-57	43.85	SMAD/FHA domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.200.20		coord: 3..110 e-value: 2.5E-13 score: 51.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..185
None	No IPR available	PANTHER	PTHR37733	SMAD/FHA DOMAIN-CONTAINING PROTEIN	coord: 1..294
IPR008984	SMAD/FHA domain superfamily	SUPERFAMILY	49879	SMAD/FHA domain	coord: 5..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G043760.1	CsaV3_3G043760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding