CsaV3_3G043340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G043340
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionexopolygalacturonase-like
Locationchr3: 35186205 .. 35186513 (-)
RNA-Seq ExpressionCsaV3_3G043340
SyntenyCsaV3_3G043340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGTGATTAAGCATTCAAACTTATTGGTTACTACATTCTTGATGTCATTGCTACCATTTACTATTGAGTCTCAATCTCATGTTGGCATTATTTTTCCTTTGAGGAAGTATGGTAATATTGTGTCCGGTGCTGATGTCACTAAGGTATAAACACACGATAAAAGTATATATCAAAGTGATGATCACTTAATAAATTAATTAATTATTTTTGCTGACTTTTGTAGTTTTGTTACCTAATAGGCTTTGAAAGATGCATGGAATGATGCATGTGCATCAGTTCGTCCAAGTGCAGTGGTTATTCCAAAT

mRNA sequence

ATGGGTGTGATTAAGCATTCAAACTTATTGGTTACTACATTCTTGATGTCATTGCTACCATTTACTATTGAGTCTCAATCTCATGTTGGCATTATTTTTCCTTTGAGGAAGTATGGTAATATTGTGTCCGGTGCTGATGTCACTAAGGCTTTGAAAGATGCATGGAATGATGCATGTGCATCAGTTCGTCCAAGTGCAGTGGTTATTCCAAAT

Coding sequence (CDS)

ATGGGTGTGATTAAGCATTCAAACTTATTGGTTACTACATTCTTGATGTCATTGCTACCATTTACTATTGAGTCTCAATCTCATGTTGGCATTATTTTTCCTTTGAGGAAGTATGGTAATATTGTGTCCGGTGCTGATGTCACTAAGGCTTTGAAAGATGCATGGAATGATGCATGTGCATCAGTTCGTCCAAGTGCAGTGGTTATTCCAAAT

Protein sequence

MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACASVRPSAVVIPN
Homology
BLAST of CsaV3_3G043340 vs. NCBI nr
Match: KAE8651277.1 (hypothetical protein Csa_001067, partial [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA
Sbjct: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60

Query: 61 SVRPSAVVIPN 72
          SVRPSAVVIPN
Sbjct: 61 SVRPSAVVIPN 71

BLAST of CsaV3_3G043340 vs. NCBI nr
Match: XP_031742281.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          MGVIK+SNLLVTTFLMSLL F IES+SHV +IFPLRKYGNIVSGADVT+ALKDAWNDACA
Sbjct: 1  MGVIKYSNLLVTTFLMSLLSFIIESRSHVDVIFPLRKYGNIVSGADVTEALKDAWNDACA 60

Query: 61 SVRPSAVVIP 71
          SVRPSAVVIP
Sbjct: 61 SVRPSAVVIP 70

BLAST of CsaV3_3G043340 vs. NCBI nr
Match: XP_031745268.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          MG+IK+SNL +TTFLMSLL FTIESQSHV +IFPLRKYGNIVSG DVT+ALKDAWNDACA
Sbjct: 1  MGMIKYSNLSITTFLMSLLSFTIESQSHVDVIFPLRKYGNIVSGDDVTEALKDAWNDACA 60

Query: 61 SVRPSAVVIPN 72
          SVRPSAVVIP+
Sbjct: 61 SVRPSAVVIPD 71

BLAST of CsaV3_3G043340 vs. NCBI nr
Match: XP_031744645.1 (LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-25
Identity = 61/69 (88.41%), Postives = 66/69 (95.65%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          MG+IK+SNLL+TTFLMSLL FTIESQSHV +IFPLRKYGNIVSG DVT+ALKDAWNDACA
Sbjct: 1  MGMIKYSNLLITTFLMSLLSFTIESQSHVDVIFPLRKYGNIVSGDDVTEALKDAWNDACA 60

Query: 61 SVRPSAVVI 70
          SVRPSAVVI
Sbjct: 61 SVRPSAVVI 69

BLAST of CsaV3_3G043340 vs. NCBI nr
Match: XP_031741749.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          MGVIK+SNLLVTTFLMSLL FTIES+SH+ +IFPL KYGNIVSGADVT+ALK+AWNDACA
Sbjct: 1  MGVIKYSNLLVTTFLMSLLSFTIESRSHIDVIFPLEKYGNIVSGADVTEALKNAWNDACA 60

Query: 61 SVRPSAVVIP 71
          SV PSAVVIP
Sbjct: 61 SVHPSAVVIP 70

BLAST of CsaV3_3G043340 vs. ExPASy TrEMBL
Match: A0A5A7UY44 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00230 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          M VIK+S+LLV TFLM+LL FT+ES+SHV +IF LRKYGNIVSGADVT+ALKDAWNDACA
Sbjct: 1  MSVIKYSSLLVITFLMALLSFTVESRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACA 60

Query: 61 SVRPSAVVIP 71
          S+RPSAVVIP
Sbjct: 61 SLRPSAVVIP 70

BLAST of CsaV3_3G043340 vs. ExPASy TrEMBL
Match: A0A5D3DD75 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00190 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          M VIK+S+LLV TFLM+LL FT+ES+SHV +IF LRKYGNIVSGADVT+ALKDAWNDACA
Sbjct: 1  MSVIKYSSLLVITFLMALLSFTVESRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACA 60

Query: 61 SVRPSAVVIP 71
          S+RPSAVVIP
Sbjct: 61 SLRPSAVVIP 70

BLAST of CsaV3_3G043340 vs. ExPASy TrEMBL
Match: A0A1S3C2F4 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495704 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          M VIK+S+LLV TFLM+LL FT+ES+SHV +IF LRKYGNIVSGADVT+ALKDAWNDACA
Sbjct: 1  MSVIKYSSLLVITFLMALLSFTVESRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACA 60

Query: 61 SVRPSAVVIP 71
          S+RPSAVVIP
Sbjct: 61 SLRPSAVVIP 70

BLAST of CsaV3_3G043340 vs. ExPASy TrEMBL
Match: A0A5A7V045 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00610 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          MGVIK+S+LLVTTFLM+LL FTIE++S+V +IF LRKY NIVSGADVT+ LKDAWNDACA
Sbjct: 1  MGVIKYSSLLVTTFLMALLSFTIETRSYVDVIFHLRKYDNIVSGADVTEDLKDAWNDACA 60

Query: 61 SVRPSAVVIP 71
          S+RPSAVVIP
Sbjct: 61 SLRPSAVVIP 70

BLAST of CsaV3_3G043340 vs. ExPASy TrEMBL
Match: A0A0A0K3B7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 1  MGVIKHSNLLVTTFLMSLLPFTIESQSHVGIIFPLRKYGNIVSGADVTKALKDAWNDACA 60
          MGVIKH  LLVTTFLMSLL FTIE++SHV  IF LRKYGNIVSGADVT+ALKDAWNDACA
Sbjct: 1  MGVIKHLILLVTTFLMSLLSFTIEARSHVD-IFSLRKYGNIVSGADVTEALKDAWNDACA 60

Query: 61 SVRPSAVVIP 71
          S RPSAVVIP
Sbjct: 61 SDRPSAVVIP 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8651277.11.4e-30100.00hypothetical protein Csa_001067, partial [Cucumis sativus][more]
XP_031742281.11.0e-2590.00exopolygalacturonase-like [Cucumis sativus][more]
XP_031745268.13.9e-2585.92exopolygalacturonase-like [Cucumis sativus][more]
XP_031744645.16.7e-2588.41LOW QUALITY PROTEIN: exopolygalacturonase [Cucumis sativus][more]
XP_031741749.11.5e-2485.71exopolygalacturonase-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UY446.7e-2381.43Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5D3DD756.7e-2381.43Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3C2F46.7e-2381.43exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103495704 PE=3 SV=1[more]
A0A5A7V0457.5e-2280.00Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0K3B77.5e-2285.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037910 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G043340.1CsaV3_3G043340.1mRNA