CsaV3_3G040540 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G040540
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ATP-dependent RNA helicase DBP3-like
Location	chr3: 33227731 .. 33228594 (+)
RNA-Seq Expression	CsaV3_3G040540
Synteny	CsaV3_3G040540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGATGGTTGACTTAGAAAATGATTAGTTTGGCAAGATGAGTGATGAGATTGATCCTGTAAGATGTGTAGTCCATAAATATGATCACACACCTTGACACAAAGAATAATAATTAAGTAGTCATATAAGCTCAAAATTATTTACAAACTTGAAAGAAGAAGAAGAATATGGCAGGAATAATGAAGAAGATCCAGGAAACAGTGCAGAGCCATAAGAAGCAACACGATGGGGAGAATGGAGCTCATGAAGGAGTTGGGATTGTGGAGAAGATGAAAGAGAAGATCCATGGTTACAAAGAGAAAAACAAAGAGAAGAAGAAGCAAAGGAAGGAGAGGAAGGAGAAAAAAGAAAAAGAGAAGAAGGAGAAAAAAGCCAAACAAAAAGCAGAAGAAGCAGAAGAAGAAGAAGATGGGGGTGAAAGCAGCGATGGCGATAGTGACGACAGTGGTGGCGGGAGCGACTAATAAGTACTGTGTGTCTTAGCGTTTCGTCCTTTCTTCTTCTTCTCTTTTTCGATTCCTTTTTAGCTTTCTATTAGAATAATATTGCATGATTAAATATGGATCGGAGTTGAAATTCAAACTTATTTCTTTTGTGTTTCTTCAAATTTGAATGTGTCACATTTTATCATACAACAACACCACACAAGATCTTAGATGGTCATTAATATCTACATGGATGTTGTCCTTCATCCATGGTGCTCCTTCGACTTCTCGTGCGTCTCTTGTTTTTCTTCTTCCTCCTCTTTTTTTCTCTTTAAAAGTTGAAACAAAATTTAGTTTTATAATATATATATATATATATGAATCCAAATGTATTAAAAGAAAACTATCAAAAGTTTACCGTATCTAATGCAACCTAATTT

mRNA sequence

ATGGCAGGAATAATGAAGAAGATCCAGGAAACAGTGCAGAGCCATAAGAAGCAACACGATGGGGAGAATGGAGCTCATGAAGGAGTTGGGATTGTGGAGAAGATGAAAGAGAAGATCCATGGTTACAAAGAGAAAAACAAAGAGAAGAAGAAGCAAAGGAAGGAGAGGAAGGAGAAAAAAGAAAAAGAGAAGAAGGAGAAAAAAGCCAAACAAAAAGCAGAAGAAGCAGAAGAAGAAGAAGATGGGGGTGAAAGCAGCGATGGCGATAGTGACGACAGTGGTGGCGGGAGCGACTAA

Coding sequence (CDS)

ATGGCAGGAATAATGAAGAAGATCCAGGAAACAGTGCAGAGCCATAAGAAGCAACACGATGGGGAGAATGGAGCTCATGAAGGAGTTGGGATTGTGGAGAAGATGAAAGAGAAGATCCATGGTTACAAAGAGAAAAACAAAGAGAAGAAGAAGCAAAGGAAGGAGAGGAAGGAGAAAAAAGAAAAAGAGAAGAAGGAGAAAAAAGCCAAACAAAAAGCAGAAGAAGCAGAAGAAGAAGAAGATGGGGGTGAAAGCAGCGATGGCGATAGTGACGACAGTGGTGGCGGGAGCGACTAA

Protein sequence

MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKKEKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD*

Homology

[Close]

BLAST of CsaV3_3G040540 vs. NCBI nr
Match: XP_031737596.1 (dehydrin HIRD11-like [Cucumis sativus] >KGN59478.1 hypothetical protein Csa_001113 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60
          MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK
Sbjct: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60

Query: 61 EKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 99
          EKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD
Sbjct: 61 EKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 98

[Close]

BLAST of CsaV3_3G040540 vs. NCBI nr
Match: XP_016899655.1 (PREDICTED: ATP-dependent RNA helicase DBP3-like [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 5.5e-25
Identity = 88/98 (89.80%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60
          MAGIMKKI+ETVQSHKKQHDGENGA EG GIVEKMKEKIHGYKEKNKEKKKQRKERKEKK
Sbjct: 1  MAGIMKKIKETVQSHKKQHDGENGA-EGGGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60

Query: 61 EKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 99
          EKE KEKKAK KA     EEDGGESSDGDSDDSGGGSD
Sbjct: 61 EKE-KEKKAKAKA-----EEDGGESSDGDSDDSGGGSD 91

[Close]

BLAST of CsaV3_3G040540 vs. ExPASy TrEMBL
Match: A0A0A0LCI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822295 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60
          MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK
Sbjct: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60

Query: 61 EKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 99
          EKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD
Sbjct: 61 EKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 98

[Close]

BLAST of CsaV3_3G040540 vs. ExPASy TrEMBL
Match: A0A1S4DVB9 (ATP-dependent RNA helicase DBP3-like OS=Cucumis melo OX=3656 GN=LOC107990607 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-25
Identity = 88/98 (89.80%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MAGIMKKIQETVQSHKKQHDGENGAHEGVGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60
          MAGIMKKI+ETVQSHKKQHDGENGA EG GIVEKMKEKIHGYKEKNKEKKKQRKERKEKK
Sbjct: 1  MAGIMKKIKETVQSHKKQHDGENGA-EGGGIVEKMKEKIHGYKEKNKEKKKQRKERKEKK 60

Query: 61 EKEKKEKKAKQKAEEAEEEEDGGESSDGDSDDSGGGSD 99
          EKE KEKKAK KA     EEDGGESSDGDSDDSGGGSD
Sbjct: 61 EKE-KEKKAKAKA-----EEDGGESSDGDSDDSGGGSD 91

The following BLAST results are available for this feature:

BLAST of CsaV3_3G040540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737596.1	2.2e-34	100.00	dehydrin HIRD11-like [Cucumis sativus] >KGN59478.1 hypothetical protein Csa_0011...	[more]
XP_016899655.1	5.5e-25	89.80	PREDICTED: ATP-dependent RNA helicase DBP3-like [Cucumis melo]	[more]

BLAST of CsaV3_3G040540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G040540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI3	1.1e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822295 PE=4 SV=1	[more]
A0A1S4DVB9	2.6e-25	89.80	ATP-dependent RNA helicase DBP3-like OS=Cucumis melo OX=3656 GN=LOC107990607 PE=...	[more]

BLAST of CsaV3_3G040540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G040540.1	CsaV3_3G040540.1	mRNA