CsaV3_3G040140 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G040140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 32951868 .. 32952066 (+)
RNA-Seq Expression	CsaV3_3G040140
Synteny	CsaV3_3G040140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAACCCTCTTCGGAGAAACCCCACACGAGCAGCTCCTCGGAAACACCTGGACGCGAGCTCAGACCAAGCGGAAGCGAACTGCGGAAGCGAGCCAGAGCTCGGCGATTCCTTCAACGCGTGTCTGGGACGACGGCCTCAGCCCACAGCGTAAGCGCGTTTTGACGACGATTGCGACGTTTTACGCCGTTGCTTCCGGC

mRNA sequence

CAACCCTCTTCGGAGAAACCCCACACGAGCAGCTCCTCGGAAACACCTGGACGCGAGCTCAGACCAAGCGGAAGCGAACTGCGGAAGCGAGCCAGAGCTCGGCGATTCCTTCAACGCGTGTCTGGGACGACGGCCTCAGCCCACAGCGTAAGCGCGTTTTG

Coding sequence (CDS)

CAACCCTCTTCGGAGAAACCCCACACGAGCAGCTCCTCGGAAACACCTGGACGCGAGCTCAGACCAAGCGGAAGCGAACTGCGGAAGCGAGCCAGAGCTCGGCGATTCCTTCAACGCGTGTCTGGGACGACGGCCTCAGCCCACAGCGTAAGCGCGTTTTG

Protein sequence

QPSSEKPHTSSSSETPGRELRPSGSELRKRARARRFLQRVSGTTASAHSVSAFX

Homology

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BLAST of CsaV3_3G040140 vs. NCBI nr
Match: KGN59588.2 (hypothetical protein Csa_023525, partial [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  QPSSEKPHTSSSSETPGRELRPSGSELRKRARARRFLQRVSGTTASAHSVSAF 54
          QPSSEKPHTSSSSETPGRELRPSGSELRKRARARRFLQRVSGTTASAHSVSAF
Sbjct: 1  QPSSEKPHTSSSSETPGRELRPSGSELRKRARARRFLQRVSGTTASAHSVSAF 53

The following BLAST results are available for this feature:

BLAST of CsaV3_3G040140 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59588.2	6.7e-17	100.00	hypothetical protein Csa_023525, partial [Cucumis sativus]	[more]

BLAST of CsaV3_3G040140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G040140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G040140 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G040140.1	CsaV3_3G040140.1	mRNA