CsaV3_3G039580 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 32532474 .. 32533288 (-)
RNA-Seq Expression	CsaV3_3G039580
Synteny	CsaV3_3G039580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCAAAAACTATTATAATTAGAACCAATAGTTAACAACTCAAATTATACATTATCTCGAATGAATTGTAGAAGTTTCAAATCTCCAACTGTCACATATTTAGTATAATTCCTAAAAGATAAGATTTAGAGATCACAAAAAAGGAGACAGAGAGAGAGCAGTCACACGAAGAACTATAAGGAAAATTTGCGTGTTGTATTCAATGTCCAAAAGCCTGCCACATTGGTAGCTCCTTGGCAATCACATTGCTCAACAAATGCCCAAATACTCAAAACTCCCAACACTATAAATTAACCATAAACAACAATAAACTAACTTATTCCTTCAACTGAAAAACTGCCCAATAATTCTCTCATTATTAATCCTTACATGGCCTCCTCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAAGCAGTAGCGCCCTTGCAGCTGTGCAGCGGCCCAACGGTGGCGGCGGCGGTGGAGGAGGTGGAGGAGGATCTGGTAGCGGATCGAGTAGTGGCTCCGGTTCAGCTTCTGGATCTGGGTCTGGCTCCGGTAGTGGCGGCGGGTCTGGTGATTCCGTAGGAATTTCTTCTGATCAGGCTGGTGGGTCAACCCACAGGAAGGCTTCTCCTTGAATTTGAATATATGAAGCCTTTCGTGTTGTTGTTCCAACTTGTCATCTCTCGATGTTCCGTCTTGTCGTTTGTTGGTTATTGTACATGATGTGTCGAGTGAAAGTAAATATGTGACCACAATAAATGACTCTTTCTGAGTCGAGTACATGCATGCAGTGTAACAGTTACGACTTAAGTAGTA

mRNA sequence

ATGGCCTCCTCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAAGCAGTAGCGCCCTTGCAGCTGTGCAGCGGCCCAACGGTGGCGGCGGCGGTGGAGGAGGTGGAGGAGGATCTGGTAGCGGATCGAGTAGTGGCTCCGGTTCAGCTTCTGGATCTGGGTCTGGCTCCGGTAGTGGCGGCGGGTCTGGTGATTCCGTAGGAATTTCTTCTGATCAGGCTGGTGGGTCAACCCACAGGAAGGCTTCTCCTTGA

Coding sequence (CDS)

ATGGCCTCCTCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAAGCAGTAGCGCCCTTGCAGCTGTGCAGCGGCCCAACGGTGGCGGCGGCGGTGGAGGAGGTGGAGGAGGATCTGGTAGCGGATCGAGTAGTGGCTCCGGTTCAGCTTCTGGATCTGGGTCTGGCTCCGGTAGTGGCGGCGGGTCTGGTGATTCCGTAGGAATTTCTTCTGATCAGGCTGGTGGGTCAACCCACAGGAAGGCTTCTCCTTGA

Protein sequence

MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGSGSGGGSGDSVGISSDQAGGSTHRKASP*

Homology

[Close]

BLAST of CsaV3_3G039580 vs. NCBI nr
Match: KGN59380.1 (hypothetical protein Csa_000800 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-27
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60
          MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60

Query: 61 GSGGGSGDSVGISSDQAGGSTHRKASP 88
          GSGGGSGDSVGISSDQAGGSTHRKASP
Sbjct: 61 GSGGGSGDSVGISSDQAGGSTHRKASP 87

[Close]

BLAST of CsaV3_3G039580 vs. ExPASy TrEMBL
Match: A0A0A0LBI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60
          MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60

Query: 61 GSGGGSGDSVGISSDQAGGSTHRKASP 88
          GSGGGSGDSVGISSDQAGGSTHRKASP
Sbjct: 61 GSGGGSGDSVGISSDQAGGSTHRKASP 87

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039580 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59380.1	4.0e-27	100.00	hypothetical protein Csa_000800 [Cucumis sativus]	[more]

BLAST of CsaV3_3G039580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBI4	1.9e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1	[more]

BLAST of CsaV3_3G039580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039580.1	CsaV3_3G039580.1	mRNA