CsaV3_3G039580 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G039580
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 32532474 .. 32533288 (-)
RNA-Seq ExpressionCsaV3_3G039580
SyntenyCsaV3_3G039580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCCAAAAACTATTATAATTAGAACCAATAGTTAACAACTCAAATTATACATTATCTCGAATGAATTGTAGAAGTTTCAAATCTCCAACTGTCACATATTTAGTATAATTCCTAAAAGATAAGATTTAGAGATCACAAAAAAGGAGACAGAGAGAGAGCAGTCACACGAAGAACTATAAGGAAAATTTGCGTGTTGTATTCAATGTCCAAAAGCCTGCCACATTGGTAGCTCCTTGGCAATCACATTGCTCAACAAATGCCCAAATACTCAAAACTCCCAACACTATAAATTAACCATAAACAACAATAAACTAACTTATTCCTTCAACTGAAAAACTGCCCAATAATTCTCTCATTATTAATCCTTACATGGCCTCCTCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAAGCAGTAGCGCCCTTGCAGCTGTGCAGCGGCCCAACGGTGGCGGCGGCGGTGGAGGAGGTGGAGGAGGATCTGGTAGCGGATCGAGTAGTGGCTCCGGTTCAGCTTCTGGATCTGGGTCTGGCTCCGGTAGTGGCGGCGGGTCTGGTGATTCCGTAGGAATTTCTTCTGATCAGGCTGGTGGGTCAACCCACAGGAAGGCTTCTCCTTGAATTTGAATATATGAAGCCTTTCGTGTTGTTGTTCCAACTTGTCATCTCTCGATGTTCCGTCTTGTCGTTTGTTGGTTATTGTACATGATGTGTCGAGTGAAAGTAAATATGTGACCACAATAAATGACTCTTTCTGAGTCGAGTACATGCATGCAGTGTAACAGTTACGACTTAAGTAGTA

mRNA sequence

ATGGCCTCCTCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAAGCAGTAGCGCCCTTGCAGCTGTGCAGCGGCCCAACGGTGGCGGCGGCGGTGGAGGAGGTGGAGGAGGATCTGGTAGCGGATCGAGTAGTGGCTCCGGTTCAGCTTCTGGATCTGGGTCTGGCTCCGGTAGTGGCGGCGGGTCTGGTGATTCCGTAGGAATTTCTTCTGATCAGGCTGGTGGGTCAACCCACAGGAAGGCTTCTCCTTGA

Coding sequence (CDS)

ATGGCCTCCTCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAAGCAGTAGCGCCCTTGCAGCTGTGCAGCGGCCCAACGGTGGCGGCGGCGGTGGAGGAGGTGGAGGAGGATCTGGTAGCGGATCGAGTAGTGGCTCCGGTTCAGCTTCTGGATCTGGGTCTGGCTCCGGTAGTGGCGGCGGGTCTGGTGATTCCGTAGGAATTTCTTCTGATCAGGCTGGTGGGTCAACCCACAGGAAGGCTTCTCCTTGA

Protein sequence

MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGSGSGGGSGDSVGISSDQAGGSTHRKASP*
Homology
BLAST of CsaV3_3G039580 vs. NCBI nr
Match: KGN59380.1 (hypothetical protein Csa_000800 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-27
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60
          MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60

Query: 61 GSGGGSGDSVGISSDQAGGSTHRKASP 88
          GSGGGSGDSVGISSDQAGGSTHRKASP
Sbjct: 61 GSGGGSGDSVGISSDQAGGSTHRKASP 87

BLAST of CsaV3_3G039580 vs. ExPASy TrEMBL
Match: A0A0A0LBI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60
          MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60

Query: 61 GSGGGSGDSVGISSDQAGGSTHRKASP 88
          GSGGGSGDSVGISSDQAGGSTHRKASP
Sbjct: 61 GSGGGSGDSVGISSDQAGGSTHRKASP 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN59380.14.0e-27100.00hypothetical protein Csa_000800 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBI41.9e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G039580.1CsaV3_3G039580.1mRNA