CsaV3_3G039370 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039370
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 32352497 .. 32352937 (+)
RNA-Seq Expression	CsaV3_3G039370
Synteny	CsaV3_3G039370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

mRNA sequence

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

Coding sequence (CDS)

ATGGCATGCACAATTCATAAATTACACCAAAAAAGAAAACCACTAAATCAATTCAACATCATCAAAAATCCGCCGAATGAAACACATTCTCCGCATCAAAACTCCCATCCATGGCCACCGTCTTCATTCCATATGCCGTCACTAGCTCCGTTGAGTGTCCGCCGTCGTACGCCTGAAAAATCTGGTGCAAATAATGGTGGTGGTGGTGGTGGCCGTCGGAGTCGTGATCGGAGGGAGGATGGTAGTAGAGCCGTGCAGTTTGAGGACAGTGAGAGTGAAATCTCGCCGCCATTCTTACTCCTACGTCCAACAATTCAACGAATTTCCCCATCGACCGGACCTTCTCTGCTGTTGATTTTCCTTTTTGTTTTTGTGATGATGAGAGAGAAAGGGAATGGAGAAGATGAAGATCGAAGGGAGCGAAATTGGGCATTTATATAA

Protein sequence

MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEKSGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIFLFVFVMMREKGNGEDEDRRERNWAFI*

Homology

[Close]

BLAST of CsaV3_3G039370 vs. NCBI nr
Match: KGN59358.1 (hypothetical protein Csa_001260 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 3.1e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK 60
           MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK
Sbjct: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK 60

Query: 61  SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF 120
           SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF
Sbjct: 61  SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF 120

Query: 121 LFVFVMMREKGNGEDEDRRERNWAFI 147
           LFVFVMMREKGNGEDEDRRERNWAFI
Sbjct: 121 LFVFVMMREKGNGEDEDRRERNWAFI 146

[Close]

BLAST of CsaV3_3G039370 vs. ExPASy TrEMBL
Match: A0A0A0LC09 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812790 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.5e-77
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK 60
           MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK
Sbjct: 1   MACTIHKLHQKRKPLNQFNIIKNPPNETHSPHQNSHPWPPSSFHMPSLAPLSVRRRTPEK 60

Query: 61  SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF 120
           SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF
Sbjct: 61  SGANNGGGGGGRRSRDRREDGSRAVQFEDSESEISPPFLLLRPTIQRISPSTGPSLLLIF 120

Query: 121 LFVFVMMREKGNGEDEDRRERNWAFI 147
           LFVFVMMREKGNGEDEDRRERNWAFI
Sbjct: 121 LFVFVMMREKGNGEDEDRRERNWAFI 146

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59358.1	3.1e-77	100.00	hypothetical protein Csa_001260 [Cucumis sativus]	[more]

BLAST of CsaV3_3G039370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC09	1.5e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812790 PE=4 SV=1	[more]

BLAST of CsaV3_3G039370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G039370.1	CsaV3_3G039370.1	mRNA