CsaV3_3G038530 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G038530
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	SET domain-containing protein
Location	chr3: 31720160 .. 31720950 (+)
RNA-Seq Expression	CsaV3_3G038530
Synteny	CsaV3_3G038530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGTCTAGCCCCTTTATCGGAGGAGCCCATCGACGAACACGACGCTCGTACTCGTACTCGTAATCGCAACCGTACCACTGCCGGAGCAGGAGGAGGAGGACGATCCTGGCGGAACTGGATCAGAACTCATTTCTCCATCCTTTCTTCTGCAAAAAAATCCGATGGCCTCAATGTTCTTCTCAGCGTCCTTGGCTGCCCTCTCTTTCCCGTCTCTCTTCAACCTAACTCCGCCGTCTCCATTACCAATCAGGTCCCTCTCCCTTTCCTTTCTTCTCTTTACCGTTTCCGTTTAATAAAATTTAAATATACAAACAAACATCTCTCTTAGGTTTAGTTCCGATTTTGATTTGTTGGAGATCTCTGTTTTTAATTATTATATTTTTAAATTTTTTGAATAATGTAATATAGTATTTGCAACACTTACAACGTTTTCTTAAGCTTTAAATTACTGAAGTACCCATGACCCTTTTATTTGAGTGACCAAATTAAACCTCTACCCTCCATCCTTATGCTTATTTTGGTCCCACATTTCATATATAGGATCCTACACTTCTTTCTATACCAACAAAATTTTGTTACATGTTGGACGAAAATTGGGATCTGTGATGGAAAATTGGAATTATTGTGTGAATCACTATCATTCCATTTATCTTCAAAATTAATTTTCTTGACCAACGATGCCGCACTACAAATTTCTAGAAAATATTCGGGTTTTAAAGTGATGATAAATTTTAGGGGTATCTTTAGTGAGTTCATATATATATATATATATATAATTCAATGACG

mRNA sequence

ATGAATCGTCTAGCCCCTTTATCGGAGGAGCCCATCGACGAACACGACGCTCGTACTCGTACTCGTAATCGCAACCGTACCACTGCCGGAGCAGGAGGAGGAGGACGATCCTGGCGGAACTGGATCAGAACTCATTTCTCCATCCTTTCTTCTGCAAAAAAATCCGATGGCCTCAATGTTCTTCTCAGCGTCCTTGGCTGCCCTCTCTTTCCCGTCTCTCTTCAACCTAACTCCGCCGTCTCCATTACCAATCAGGTCCCTCTCCCTTTCCTTTCTTCTCTTTACCGTTTCCGTTTAATAAAATTTAAATATACAAACAAACATCTCTCTTAG

Coding sequence (CDS)

ATGAATCGTCTAGCCCCTTTATCGGAGGAGCCCATCGACGAACACGACGCTCGTACTCGTACTCGTAATCGCAACCGTACCACTGCCGGAGCAGGAGGAGGAGGACGATCCTGGCGGAACTGGATCAGAACTCATTTCTCCATCCTTTCTTCTGCAAAAAAATCCGATGGCCTCAATGTTCTTCTCAGCGTCCTTGGCTGCCCTCTCTTTCCCGTCTCTCTTCAACCTAACTCCGCCGTCTCCATTACCAATCAGGTCCCTCTCCCTTTCCTTTCTTCTCTTTACCGTTTCCGTTTAATAAAATTTAAATATACAAACAAACATCTCTCTTAG

Protein sequence

MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNVLLSVLGCPLFPVSLQPNSAVSITNQVPLPFLSSLYRFRLIKFKYTNKHLS*

Homology

[Close]

BLAST of CsaV3_3G038530 vs. NCBI nr
Match: KAE8651125.1 (hypothetical protein Csa_001511 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.2e-54
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
           MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV
Sbjct: 1   MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60

Query: 61  LLSVLGCPLFPVSLQPNSAVSITNQVPLPFLSSLYRFRLIKFKYTNKHLS 111
           LLSVLGCPLFPVSLQPNSAVSITNQVPLPFLSSLYRFRLIKFKYTNKHLS
Sbjct: 61  LLSVLGCPLFPVSLQPNSAVSITNQVPLPFLSSLYRFRLIKFKYTNKHLS 110

[Close]

BLAST of CsaV3_3G038530 vs. NCBI nr
Match: XP_008443008.1 (PREDICTED: uncharacterized protein LOC103486737 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 8.0e-33
Identity = 79/86 (91.86%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          MNRLAPLSEEPIDEHDA  RTRNR+RTT  AGGGGRSWRNWIRTHFSILSS KKSDGLNV
Sbjct: 1  MNRLAPLSEEPIDEHDA--RTRNRHRTT--AGGGGRSWRNWIRTHFSILSSGKKSDGLNV 60

Query: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 87
          LLSVLGCPLFPVSLQPNSAVS TNQV
Sbjct: 61 LLSVLGCPLFPVSLQPNSAVSHTNQV 82

[Close]

BLAST of CsaV3_3G038530 vs. NCBI nr
Match: XP_038906374.1 (uncharacterized protein LOC120092207 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-30
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGG-RSWRNWIRTHFSILSSAKKSDGLN 60
          MNRLAPLSEEPIDEHD  +RTRNRNR++ G GGGG RSWRNWIRTHFSILS  KKSDGLN
Sbjct: 6  MNRLAPLSEEPIDEHD--SRTRNRNRSSGGGGGGGRRSWRNWIRTHFSILSCGKKSDGLN 65

Query: 61 VLLSVLGCPLFPVSLQPNSAVSITNQV 87
          VLLSVLGCPLFPVSLQPNS VS TNQV
Sbjct: 66 VLLSVLGCPLFPVSLQPNS-VSDTNQV 89

[Close]

BLAST of CsaV3_3G038530 vs. NCBI nr
Match: XP_022982999.1 (uncharacterized protein LOC111481672 [Cucurbita maxima])

HSP 1 Score: 140.6 bits (353), Expect = 8.3e-30
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          MNRLAPLSEEPIDEHD RTR RNR+ + +G GGGGRSWRNWIRTH SILSS K+SDGLNV
Sbjct: 6  MNRLAPLSEEPIDEHDGRTRNRNRSGSGSG-GGGGRSWRNWIRTHLSILSSGKRSDGLNV 65

Query: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 87
          LLSVLGCPLFPVS+QPN+ VS  NQV
Sbjct: 66 LLSVLGCPLFPVSVQPNNFVSSANQV 90

[Close]

BLAST of CsaV3_3G038530 vs. NCBI nr
Match: XP_022934078.1 (uncharacterized protein LOC111441359 [Cucurbita moschata])

HSP 1 Score: 138.3 bits (347), Expect = 4.1e-29
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          M+RLAPLSEEPIDE D RTR RNR+ + +G GGGGRSWRNWIRTH SILS  KKSDGLNV
Sbjct: 6  MSRLAPLSEEPIDEQDGRTRNRNRSGSGSGGGGGGRSWRNWIRTHLSILSCGKKSDGLNV 65

Query: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 87
          LLSVLGCPLFPVS++PN+ VS  NQV
Sbjct: 66 LLSVLGCPLFPVSVEPNNFVSSANQV 91

[Close]

BLAST of CsaV3_3G038530 vs. ExPASy TrEMBL
Match: A0A0A0LBR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797570 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.3e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV
Sbjct: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60

Query: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 87
          LLSVLGCPLFPVSLQPNSAVSITNQV
Sbjct: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 86

[Close]

BLAST of CsaV3_3G038530 vs. ExPASy TrEMBL
Match: A0A1S3B7U5 (uncharacterized protein LOC103486737 OS=Cucumis melo OX=3656 GN=LOC103486737 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.9e-33
Identity = 79/86 (91.86%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          MNRLAPLSEEPIDEHDA  RTRNR+RTT  AGGGGRSWRNWIRTHFSILSS KKSDGLNV
Sbjct: 1  MNRLAPLSEEPIDEHDA--RTRNRHRTT--AGGGGRSWRNWIRTHFSILSSGKKSDGLNV 60

Query: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 87
          LLSVLGCPLFPVSLQPNSAVS TNQV
Sbjct: 61 LLSVLGCPLFPVSLQPNSAVSHTNQV 82

[Close]

BLAST of CsaV3_3G038530 vs. ExPASy TrEMBL
Match: A0A6J1J631 (uncharacterized protein LOC111481672 OS=Cucurbita maxima OX=3661 GN=LOC111481672 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.0e-30
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          MNRLAPLSEEPIDEHD RTR RNR+ + +G GGGGRSWRNWIRTH SILSS K+SDGLNV
Sbjct: 6  MNRLAPLSEEPIDEHDGRTRNRNRSGSGSG-GGGGRSWRNWIRTHLSILSSGKRSDGLNV 65

Query: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 87
          LLSVLGCPLFPVS+QPN+ VS  NQV
Sbjct: 66 LLSVLGCPLFPVSVQPNNFVSSANQV 90

[Close]

BLAST of CsaV3_3G038530 vs. ExPASy TrEMBL
Match: A0A6J1F6M9 (uncharacterized protein LOC111441359 OS=Cucurbita moschata OX=3662 GN=LOC111441359 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.0e-29
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          M+RLAPLSEEPIDE D RTR RNR+ + +G GGGGRSWRNWIRTH SILS  KKSDGLNV
Sbjct: 6  MSRLAPLSEEPIDEQDGRTRNRNRSGSGSGGGGGGRSWRNWIRTHLSILSCGKKSDGLNV 65

Query: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 87
          LLSVLGCPLFPVS++PN+ VS  NQV
Sbjct: 66 LLSVLGCPLFPVSVEPNNFVSSANQV 91

[Close]

BLAST of CsaV3_3G038530 vs. ExPASy TrEMBL
Match: A0A6J1KUK6 (uncharacterized protein LOC111498804 OS=Cucurbita maxima OX=3661 GN=LOC111498804 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.9e-28
Identity = 69/86 (80.23%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          MNRLAPLSEEPIDE D RTR RNR+ T AG+ GGGRSWRNWIRTH SIL   KKSD LNV
Sbjct: 1  MNRLAPLSEEPIDETDGRTRHRNRS-TAAGSRGGGRSWRNWIRTHLSILYCGKKSDSLNV 60

Query: 61 LLSVLGCPLFPVSLQPNSAVSITNQV 87
          LLSVLGCPLFPVS+QPN+ VS TNQV
Sbjct: 61 LLSVLGCPLFPVSVQPNTIVSSTNQV 85

[Close]

BLAST of CsaV3_3G038530 vs. TAIR 10
Match: AT5G06610.1 (Protein of unknown function (DUF620) )

HSP 1 Score: 63.9 bits (154), Expect = 9.2e-11
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 1  MNRLAPLSEEPIDEHDARTRTRNRNRTTAGAGGGGRSWRNWIRTHFSILSSAKKSDGLNV 60
          M RLAPL EEPIDE D       R  +T       +SW+ WI+T    +   KK D + +
Sbjct: 1  MQRLAPLMEEPIDEEDQEEERGGRKGSTR-----SKSWKKWIKTQLQFIVFPKKPD-MKL 60

Query: 61 LLSVLGCPLFPVSLQPNSAVSI 83
          LLSV+GCPLFPV   P S +S+
Sbjct: 61 LLSVMGCPLFPV--PPLSKISL 74

The following BLAST results are available for this feature:

BLAST of CsaV3_3G038530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651125.1	2.2e-54	100.00	hypothetical protein Csa_001511 [Cucumis sativus]	[more]
XP_008443008.1	8.0e-33	91.86	PREDICTED: uncharacterized protein LOC103486737 [Cucumis melo]	[more]
XP_038906374.1	6.3e-30	86.21	uncharacterized protein LOC120092207 [Benincasa hispida]	[more]
XP_022982999.1	8.3e-30	81.40	uncharacterized protein LOC111481672 [Cucurbita maxima]	[more]
XP_022934078.1	4.1e-29	77.91	uncharacterized protein LOC111441359 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G038530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G038530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBR2	3.3e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G797570 PE=4 SV=1	[more]
A0A1S3B7U5	3.9e-33	91.86	uncharacterized protein LOC103486737 OS=Cucumis melo OX=3656 GN=LOC103486737 PE=...	[more]
A0A6J1J631	4.0e-30	81.40	uncharacterized protein LOC111481672 OS=Cucurbita maxima OX=3661 GN=LOC111481672...	[more]
A0A6J1F6M9	2.0e-29	77.91	uncharacterized protein LOC111441359 OS=Cucurbita moschata OX=3662 GN=LOC1114413...	[more]
A0A6J1KUK6	2.9e-28	80.23	uncharacterized protein LOC111498804 OS=Cucurbita maxima OX=3661 GN=LOC111498804...	[more]

BLAST of CsaV3_3G038530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06610.1	9.2e-11	45.12	Protein of unknown function (DUF620)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G038530.1	CsaV3_3G038530.1	mRNA