CsaV3_3G037930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G037930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	mediator of RNA polymerase II transcription subunit 27
Location	chr3: 31220133 .. 31224742 (+)
RNA-Seq Expression	CsaV3_3G037930
Synteny	CsaV3_3G037930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAAAAGAAAAGAAAAGAAAAGGGAGAGGTTGGAAATTGAGAAATTAGCGGTCGTCTTGGTCACACCTCCGAAGCCTTTTGGGGAAAGAAATTGGAAGCAGTGAACATCGTCGGAGGGGTAAATGCGACATATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAGCACTCACTCTCCCCCCTCCCCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTCATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTCACTGCTCAGCCTCATCAAAGCTCTAAGCCCCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGTACTTTGCACCATTTCCATTTTTTCTTTTCTTTTAGGGTTACGACTAAGGTCGCACTAGATTTTAATTGTTTACTTCTGATTTTGTTAGGAAAGCAGCTTGAAGAGTCTGGCGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAACTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAATTGGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACAAGGTTAGTTTAGACAGCAAATTAGCTTCCCTGGGACATGAATTTGAAGAACAGCTTGAAATTTGGAAGTTTACTCGACATTTCTTCATATTGCTTAGTGATAATTTGGACTCGATCGGCTACGTGCTCGGATTGATGATATTAATAAATTCCCAAATAATTCGATCAAGTATTTTGCATGTGTAGTATATAAGTGAAGCATCGAAGGTTATAGCTGCTTTGGGGTTTATTAGGAATATTTAGATTGACTAGAGAAGAAGGAATTATCGGTTTTTTGGCCCCCCAATCGTTTGTCTCCTAATTTTTATGCGCCACCCCGCTTTCTCCCCAAAACCCCTTCATTTTCCTCTCTTTGGAAAGCTGGAATTCCAAAGAGTAAAATTTTTTGCCTGACAAAGTTAACACTTCGGATCACGTTCAGACACATTCTTAGTCGCGTCTTGGTTCTTAGTGACACATCTTGTGCAGAGGAGCTCTGGCGGATGTTGATCATTTATTTTGGAGTTGCCAATTTGTGCAATTGATTTGGTGGTATTTTTGGGACTCTTTGAGACTTCTGTCGTTTGTGATAGGGGCATGCAGCGCCATGATGGAAGTGATTGTGTTGTTCCCTCCCTTCAAGAGTATAGGTTCTACAACTCTGTCCCTGAGTTCTAAGGATAAACAAAAAGTTCTTTGGCAACCTTTTCTCCCTAAATCTTGTGAGTACGTTTGGCTTGAAAAAAAAAACAGATCTTTGAGGGTTCGGTCGGTCTTGGCATGTTTTTTGGGAGGATACCCTTGTTTAATACTTGCGATGGCCTCTAAGGCCTTTTGTCATTATCAGTTAGGTGTTATTCTTTTGGATTGGAGACCTTATTATTTATTTCTTTTGAAGGTTGGGCCTGTTCTTGTGTGGGCTGTCTTTATGTATGCCCCTTGTATCTTCCTTTATGTTTCTCAATAAAGCTCTATGTTTTATGACATGAAAAACAAGCAATAACAAGAAGAAGAATCCAAGTTGTAAGATGAATAAATGCCATGTGGAAATGATGTTTCATAGTTAACTGGTTACCATTAGGTTATGGCCTGTGTCAAACAACATATTTTGTTCACCTACAAAGGATTTTAATATTGAACACATCTCTTCTAACACAGAGCGATGAAGTTATTTAATGAATTGACCTTGAATGTGTGTTTGCTTCTACTTTACCGGAGGACAGTTTCAGTTGTTTTCGAAATTTTTAAACAATAGACAAAATCATTTAATTTTTAATCTGACTTCCATAAGTTCAGATGAGTGTTTTACTGATGCTTTGCTTGTTAATAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTCTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTATGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCGGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATCATTCCTTCCGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGGTACTCTATTTCCCGCATAAGTATTCATTTTCAAAATATTTTACTCATTATTCTGTTGTACAGACAAGAAAATTCTCCAATAAATGGTGTTATTGCCTGATATGAGGGTTTAAAGATATGCAACCACTTGATTTATGAAATAGTTGGCGCACGACATTTATTAAGTTCTATTTATATCATTCACTCACACACACGCACACATATATAATTCAAAACCAAAATTTTTAATACTATTGTATTGTTGATCGTCATTGTATTTTAACAGATCTGAGACTAGACTTGGTGTTTGTTCATTACAAATGCAATTAGACTTTTTAGTTTATTTTTCTAAAATTATTATCTCTGCTTGAAGCCTCCACCTGGTTCCGATTCATTGGTCTTTTTCCCACTGATTTTTATTGTATCTTACTTGAGTACTTAAGTTGGTAATGTTGCAGTTTATTTAGAACTTTTTGTGTTTTAACAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTGTTCAGACATGTTACGGTACCAATCACTTTGCTCATAATGTTCACTTTCATTCACATTTATGAAGGTTGCCTTCTCTCAGAGATGATAATTTCGTTTTATCTTGATGCAGGAGCATGCTGCCACAGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGGTGAAACATCACTCATTGAATTTGTACCTTGAGATATTCTTTCTCCTTTTCATTTAAAACCCTCGTCAATTAATTTTTGGTACTTTCTTGTAGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGGTGGGTTTAAGAGTTTTTAGTGCTTCCATATTTGGTTTTGTATGGATTTGACACTTACCATCATGTGTTATCTGATCTTGCAGTAAATGTGGACGGCGTTTATCAGTAAACAAACAATCTGATTTATTGTTACCTCCTGCAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGTTGTGCCCATAACCTCATTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGATTGTTTCTCAGAAGAAATATAGTCACACTTAGCGGTTCAGGTACAGTTAGAATAAACCACACTATTGTCAATTGCTTGACCATTTTTAAGCATGTAACTGATCGTGGATTTCTTTTATCTGGTAATAGTGGCAGTATGCACCAGTTCCTACTAATTAACGATTTCCTAACATTAAAATCTACTAAGCTCACTCTTTCATGGCCCATAATACAACTTTTAGTCTATGTTCGGCTGTTACTGAATAGATATGGAACATTGCAAGGGGGCTCATCCCAGACTCTTCTGCTCTGTTGGAATGCTTTAAATTTATCATCTCACGCTCCTAATAACCAAGCATGGAGTGTCATATATTACTTTTTTTTTTTTTTTTTATTGATTCTGCTTCCGTATTAGCATGTTCCTTGTCTTTCACCTGCACTGAACCTTGTTTTTCTCAACTTCACTCGTCTAATTGTTGGTTATAATTCGCTTCAGGGCCTCATGGACTCTGATTCAAATGATATACGGCAATATCCTCAGAATCAGAGGATGGCCCAGGCTGCTATGCTATCTTGTGCTGCTTTTGGTGATTGCAATTACATGCACGGAATGATATTCACATTCAGATTACACATAGGAGCTAATCTAATCGTGATTTCGAAAATGACCATCTGTTACTGATGCGGTTATTTTTGTTGTCTCAAGTCGCTTGCCATCATCAAGCCAGGCTAAAGGTACACTCATTTGCTTTTGATATGAGCAATTGCTATTTTTTGTCAATCTGCTCAGAAAGGTAACTTTGGATTTTGGAATTATTGGTATCTTTCTTTCCACTTCAGATTCAAGTGAAGGAAGTTAGGGTTTCATTAGTATGAGCGTGCATATGTACAATACTCTAAAGTTTGGATCAGCAGAAGAGCGAAAAACTTTAGTAAACATTTGAACCTCAAGAGTCAATAGTTATGAAAACATTTTGTTGGTGTTATTAATTACTCTTGAAAGTTGAATATACTATGTAATATCTTATGAAAAACTAATTGGTTATGGTTTTGACATATATTTGAGTACAACAAGAACTAAACCAAAAACATCCTATAAAACTGGAATATATATTATATATACATCTGTGTG

mRNA sequence

ATGCGACATATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAGCACTCACTCTCCCCCCTCCCCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTCATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTCACTGCTCAGCCTCATCAAAGCTCTAAGCCCCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCTGGCGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAACTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAATTGGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACAAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTCTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTATGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCGGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATCATTCCTTCCGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTGTTCAGACATGTTACGGAGCATGCTGCCACAGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGTTGTGCCCATAACCTCATTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGA

Coding sequence (CDS)

ATGCGACATATTCAGCAGCCATCGCAGGGCCAAACTGCGACGGTCAGCCCTAGCACTCACTCTCCCCCCTCCCCCGACGACGCTCCTCCCAAGCAGGTTGCTCTCGCCATGGACAGACTCGGCCACGCCGCTCGTCTCATCGCCGACATCAGACTCGGCGCTGATCGCCTTCTCGAAGCCCTATGCGTCACTGCTCAGCCTCATCAAAGCTCTAAGCCCCTCCATTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTCGACCTTCGTGCAGTTGGAAAGCAGCTTGAAGAGTCTGGCGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAACTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCTGTGGTTGCTTATGCTTGGAAACGTCAATTGGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACAAGGTTAGCTTTAAAGGCCTTCACTGACCAAAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGCGTCAAATAATGAGCCTGCTCTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTATTGATTCTAGATCACTCTCGGATATTTTATCCTGTATGGAAAAGGAAGTGCCAGAGCTTAAGATTTTCACTTATGAGCGATTGGACTGGTTAAAACAAGCTTCGGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCTGGAGCACTTGGGGCTACTCCTGCAGATAAAGCTGGTGTGATTGAGTTGATCATTCCTTCCGTCTTTAGAGCCGTAGTATCTCTGCATCCAGTTGGTTCTGTTGAACCAGATGCTCTCGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTGTTCAGACATGTTACGGAGCATGCTGCCACAGTGCTGCAGTATTTTCTTGGAAATCAACCAAAAGCAGCTCTTTATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTTCGGCCGTACAAACAGTTTTGTGCATCAAAAAACTCATCAGTTGTGCCCATAACCTCATTGAAAGACCAGAAGCTGGATTCTGTTCAAGCTTTCCACATTGA

Protein sequence

MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSSAVQTVLCIKKLISCAHNLIERPEAGFCSSFPH*

Homology

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BLAST of CsaV3_3G037930 vs. NCBI nr
Match: XP_031739120.1 (mediator of RNA polymerase II transcription subunit 27 isoform X2 [Cucumis sativus] >KAE8651114.1 hypothetical protein Csa_001284 [Cucumis sativus])

HSP 1 Score: 787.3 bits (2032), Expect = 6.0e-224
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SSAVQTVLCIKKLISCAHNLIERPEAGFCSSFPH 395
           SSAVQTVLCIKKLISCAHNLIERPEAGFCSSFPH
Sbjct: 361 SSAVQTVLCIKKLISCAHNLIERPEAGFCSSFPH 394

[Close]

BLAST of CsaV3_3G037930 vs. NCBI nr
Match: XP_004136512.1 (mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativus])

HSP 1 Score: 721.8 bits (1862), Expect = 3.1e-204
Identity = 368/391 (94.12%), Postives = 371/391 (94.88%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           S   +  L + K          RP   FC+S
Sbjct: 361 SKCGRR-LSVNKQSDLLLPPAVRPYKQFCAS 390

[Close]

BLAST of CsaV3_3G037930 vs. NCBI nr
Match: XP_008442914.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo])

HSP 1 Score: 713.0 bits (1839), Expect = 1.4e-201
Identity = 362/391 (92.58%), Postives = 370/391 (94.63%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPIGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           S   +  L + K        + RP   FC+S
Sbjct: 361 SKCGRR-LSVNKQSDLLLPPVVRPYKQFCAS 390

[Close]

BLAST of CsaV3_3G037930 vs. NCBI nr
Match: XP_038904949.1 (mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904950.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904951.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904952.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida])

HSP 1 Score: 686.4 bits (1770), Expect = 1.4e-193
Identity = 351/394 (89.09%), Postives = 363/394 (92.13%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPST---HSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  QQP+QGQTATVSP+T   HSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQQPAQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVTDVKQNEL DSRSLS+IL+CMEKEVPELKIFTYERLDWLKQASALPSQA
Sbjct: 181 ALKKPCFSHGVTDVKQNELNDSRSLSEILTCMEKEVPELKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIG LKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGVLKEHSYHSPRMSPGSLGATPVDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYFLGNQ KAALYPLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGNQAKAALYPLLLWICSYQNLFS 360

Query: 361 KACSSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           KACS   Q +L + K          RP   FC+S
Sbjct: 361 KACSKCGQ-LLSVNKQSDLLLPPAVRPYKQFCAS 393

[Close]

BLAST of CsaV3_3G037930 vs. NCBI nr
Match: XP_022940393.1 (mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata])

HSP 1 Score: 643.7 bits (1659), Expect = 1.1e-180
Identity = 333/394 (84.52%), Postives = 352/394 (89.34%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPST---HSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  Q P+QG TATVSP+T   HS  S ++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ EL DS SLSDIL+CMEKEVP+LKIFTYERLDWLKQASALPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           KACS   + +L + K          RP   FC+S
Sbjct: 361 KACSKCGR-LLSVNKQSDLLLPPAIRPYKQFCTS 393

[Close]

BLAST of CsaV3_3G037930 vs. ExPASy Swiss-Prot
Match: Q8RWM3 (Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana OX=3702 GN=MED27 PE=1 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.4e-114
Identity = 217/349 (62.18%), Postives = 265/349 (75.93%), Query Frame = 0


Query: 24  SPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDAS 83
           S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDAS
Sbjct: 21  SESDAPPKQVAQAMERLNQAARVIADIRLGADRILEAMFVASQPRHTDMPLQLFLREDAS 80

Query: 84  MRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGA 143
           MRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGA
Sbjct: 81  MRQHLQDLRLIGKKLEESGVLTESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGA 140

Query: 144 SAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSRSLS 203
           SAVDRTRLALKAFTDQKRRFFPH++D      EP+ KK   SH + +  + E +D ++L 
Sbjct: 141 SAVDRTRLALKAFTDQKRRFFPHIDD--GLKMEPSSKKHRASHLLLENGREEPVDYKTLP 200

Query: 204 DILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGAT 263
           DI S +EK VP +K+ TY RL+WLK+A++LP   +++   A K     S ++  G L   
Sbjct: 201 DIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKPIFQSSSKLRSG-LQTE 260

Query: 264 PADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVT 323
             DK  VIEL  PS+FRA+VSL P GSV+PDA+AFFSPDE GS++HARGFS YH+++H+T
Sbjct: 261 VVDKIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHIT 320

Query: 324 EHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSSAVQTVLCIKK 373
           EHAAT LQYFLG     ALY LLLWICS++++FSK C+   + +   KK
Sbjct: 321 EHAATALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKK 366

[Close]

BLAST of CsaV3_3G037930 vs. ExPASy TrEMBL
Match: A0A0A0LGT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781560 PE=3 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 1.5e-204
Identity = 368/391 (94.12%), Postives = 371/391 (94.88%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           S   +  L + K          RP   FC+S
Sbjct: 361 SKCGRR-LSVNKQSDLLLPPAVRPYKQFCAS 390

[Close]

BLAST of CsaV3_3G037930 vs. ExPASy TrEMBL
Match: A0A1S3B7L6 (mediator of RNA polymerase II transcription subunit 27 OS=Cucumis melo OX=3656 GN=LOC103486676 PE=3 SV=1)

HSP 1 Score: 713.0 bits (1839), Expect = 6.9e-202
Identity = 362/391 (92.58%), Postives = 370/391 (94.63%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPSTHSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60
           MRHIQQPSQGQTATVSP+THSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA
Sbjct: 1   MRHIQQPSQGQTATVSPNTHSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEA 60

Query: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120
           LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP
Sbjct: 61  LCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMP 120

Query: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180
           LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK
Sbjct: 121 LVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALK 180

Query: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQANEN 240
           KPCFSHGVTDVKQNELIDSRSLSDILSC+EKEVPELKIFTYERLDWLKQASALPSQANEN
Sbjct: 181 KPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQANEN 240

Query: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFS 300
           SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHP+GSVEPDALAFFS
Sbjct: 241 SIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPIGSVEPDALAFFS 300

Query: 301 PDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360
           PDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC
Sbjct: 301 PDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKAC 360

Query: 361 SSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           S   +  L + K        + RP   FC+S
Sbjct: 361 SKCGRR-LSVNKQSDLLLPPVVRPYKQFCAS 390

[Close]

BLAST of CsaV3_3G037930 vs. ExPASy TrEMBL
Match: A0A6J1FP59 (mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita moschata OX=3662 GN=LOC111446014 PE=3 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 5.2e-181
Identity = 333/394 (84.52%), Postives = 352/394 (89.34%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPST---HSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  Q P+QG TATVSP+T   HS  S ++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ EL DS SLSDIL+CMEKEVP+LKIFTYERLDWLKQASALPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIGALKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           KACS   + +L + K          RP   FC+S
Sbjct: 361 KACSKCGR-LLSVNKQSDLLLPPAIRPYKQFCTS 393

[Close]

BLAST of CsaV3_3G037930 vs. ExPASy TrEMBL
Match: A0A6J1KZZ9 (mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita maxima OX=3661 GN=LOC111498620 PE=3 SV=1)

HSP 1 Score: 640.6 bits (1651), Expect = 4.4e-180
Identity = 331/394 (84.01%), Postives = 350/394 (88.83%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPST---HSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  Q P+QG TATVSP+T   HS  S ++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++EN SN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ EL DS SLSDIL+CMEKEVP+LKIFTYERLDWLKQAS LPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASVLPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           NENSIG LKEH+YHSPRMSP +L AT  DKA VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGTLKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G Q KAAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           KACS   + +L + K          RP   FC+S
Sbjct: 361 KACSKCGR-LLSVNKQSDLLLPPAIRPYKQFCTS 393

[Close]

BLAST of CsaV3_3G037930 vs. ExPASy TrEMBL
Match: A0A6J1DC62 (mediator of RNA polymerase II transcription subunit 27 OS=Momordica charantia OX=3673 GN=LOC111019372 PE=3 SV=1)

HSP 1 Score: 625.2 bits (1611), Expect = 1.9e-175
Identity = 322/394 (81.73%), Postives = 348/394 (88.32%), Query Frame = 0


Query: 1   MRHIQQPSQGQTATVSPST---HSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  QQP+QGQTATVSP+T   HS  S ++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTA PHQS+KPLHLFQKED SMRQHL DLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEP 180

Query: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVT++KQ+EL + R+LSDIL+CMEKEVP+LKIFTYERLDWLKQA AL SQA
Sbjct: 181 ALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300
           N+NSIGALKEH+YHSPRM PG+L A+  DK  VIELIIPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360
           FF+PDERGS+VHARGFS +HLFRHVTEHAATVLQYFLG Q KAALYPLLLWICSYQNLFS
Sbjct: 301 FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFS 360

Query: 361 KACSSAVQTVLCIKKLISCAHNLIERPEAGFCSS 392
           KACS   + +L + K          RP   FC+S
Sbjct: 361 KACSKCGR-LLSVNKQSDLLLPPAIRPYKQFCTS 393

[Close]

BLAST of CsaV3_3G037930 vs. TAIR 10
Match: AT3G09180.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 414.5 bits (1064), Expect = 9.8e-116
Identity = 217/349 (62.18%), Postives = 265/349 (75.93%), Query Frame = 0


Query: 24  SPDDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSSKPLHLFQKEDAS 83
           S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDAS
Sbjct: 21  SESDAPPKQVAQAMERLNQAARVIADIRLGADRILEAMFVASQPRHTDMPLQLFLREDAS 80

Query: 84  MRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGA 143
           MRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGA
Sbjct: 81  MRQHLQDLRLIGKKLEESGVLTESLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGA 140

Query: 144 SAVDRTRLALKAFTDQKRRFFPHLEDENASNNEPALKKPCFSHGVTDVKQNELIDSRSLS 203
           SAVDRTRLALKAFTDQKRRFFPH++D      EP+ KK   SH + +  + E +D ++L 
Sbjct: 141 SAVDRTRLALKAFTDQKRRFFPHIDD--GLKMEPSSKKHRASHLLLENGREEPVDYKTLP 200

Query: 204 DILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGALGAT 263
           DI S +EK VP +K+ TY RL+WLK+A++LP   +++   A K     S ++  G L   
Sbjct: 201 DIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKPIFQSSSKLRSG-LQTE 260

Query: 264 PADKAGVIELIIPSVFRAVVSLHPVGSVEPDALAFFSPDERGSHVHARGFSNYHLFRHVT 323
             DK  VIEL  PS+FRA+VSL P GSV+PDA+AFFSPDE GS++HARGFS YH+++H+T
Sbjct: 261 VVDKIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFSVYHVYKHIT 320

Query: 324 EHAATVLQYFLGNQPKAALYPLLLWICSYQNLFSKACSSAVQTVLCIKK 373
           EHAAT LQYFLG     ALY LLLWICS++++FSK C+   + +   KK
Sbjct: 321 EHAATALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKK 366

The following BLAST results are available for this feature:

BLAST of CsaV3_3G037930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739120.1	6.0e-224	100.00	mediator of RNA polymerase II transcription subunit 27 isoform X2 [Cucumis sativ...	[more]
XP_004136512.1	3.1e-204	94.12	mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativ...	[more]
XP_008442914.1	1.4e-201	92.58	PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo]	[more]
XP_038904949.1	1.4e-193	89.09	mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_0...	[more]
XP_022940393.1	1.1e-180	84.52	mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G037930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM3	1.4e-114	62.18	Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_3G037930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGT1	1.5e-204	94.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781560 PE=3 SV=1	[more]
A0A1S3B7L6	6.9e-202	92.58	mediator of RNA polymerase II transcription subunit 27 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1FP59	5.2e-181	84.52	mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita moschata OX=...	[more]
A0A6J1KZZ9	4.4e-180	84.01	mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita maxima OX=36...	[more]
A0A6J1DC62	1.9e-175	81.73	mediator of RNA polymerase II transcription subunit 27 OS=Momordica charantia OX...	[more]

BLAST of CsaV3_3G037930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09180.1	9.8e-116	62.18	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627);...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021627	Mediator complex, subunit Med27	PFAM	PF11571	Med27	coord: 314..362 e-value: 4.0E-13 score: 49.6
IPR021627	Mediator complex, subunit Med27	PANTHER	PTHR13130	34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED	coord: 4..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR13130:SF5	BNAC03G36240D PROTEIN	coord: 4..367

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G037930.1	CsaV3_3G037930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016592	mediator complex