CsaV3_3G037170 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G037170
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein YIP
Location	chr3: 30769005 .. 30770730 (+)
RNA-Seq Expression	CsaV3_3G037170
Synteny	CsaV3_3G037170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACGGTGAAGAAGGAGTTCGCTGTTCCGCCAGTGGTTTTTCCCTCTGGCGGTAACCCCAATCTTCAACAACGGCGGGGTGTGGCGACGGCGCCGTTTCAGCCTCCTCGGCAGACTGGCTCCAGCATTCCGTTTATGTCATTTGACATCGGATCCGCCGCTGCTGCTTCCACATCCTCCGGCAGTATCTATGGTGGTCCTATTGGTGGTGGGTCTATCCCTGGTGGTGCTAATTTCGAAGACGAAGAACCCCTCCTCGATGAACTCGGGATCCACCCTGATCAAATCTGGAAGAAAACCAAGTCGATCTTGAATCCGTTCCGGGTCAAACCCGATGTGCACAAGGACTCGGACTTGTCTGGACCGATTCTCTTATATATGTTCTTTGGCCTCTTCCAGTTGCTTGCCGGTAAGATCCAATTCGGCGTGATACTGGGATGGATCGTGGTTTCTTCCATCTTTCTGTATGTTGTGTTCAATATGTTGGCCGGGCGGAATGGTAATTTGAATCTTCACACGTGTACTAGCGTGGTTGGGTACTGTATGTTGCCTGTCGTGGTTTTGTCGGCTGTGTCTTTGTTCCTGCCGCAAGCCGGTCTAGTGAGATTCGCAGTTGCTGGAGTTTTTGTGTTGTGGGCGACGAGGATCTGTACGAGTCTTATGGTTTCTCTTGCTGATGGTGGGGATGAGCACCGTGGCTTGATAGCGTATGCTTGTTTTTTGATTTTTACTCTGTTTTCGCTGTTAGTTATATTTTAGTTCTGATAATGCAACTTCAGCTTTGTGATTAGCATTGACATTTTTTGTTTTTTACGAAAAGGGGAAAAAAAGAAAAGAGCACACTCTGTACTGAATTTTTTGTTTACTATATTGATTACTAGTTCAAGTTTGATTGATGGTGGAATGGGAAACTTGTTGTAGTAAATGAGAAATCCATTTGCTTTTAACTTTTTTATTTGTGCCATGTTCGTCATTTATTCTATTAGTCTTGTCAGTTATAAACTAGTTTACTTGTATAGTTAATTAGTAGGTGTTGAATGGCCTGTGATCTATTTAATTTTAAGCAGCCTATGCCGGGTTTTAAGTGTGAAGTGTGTGTATAATTGGATTGGTTAGTGACCCCCACAAGCTGAATATTCATTCGTTAGCAGTGTCCCTATGAACAATTGTCTTGGAGATAAAGTATTTTTAGTTGCACTTGCCTTTGATCTGGATGTTTCTTTTGCTCGATAAGACAGCATTCTCATGCATTGTTTTGAAAGACTTAAATTCAATATGTAGGTTTTTGTTGTGGAAAAATCAAGTCTCAAGGCATCAACCTCAAAAGCCTGTCAATGGTTGCCTGCTAGTATACAATCAATATATTTAGATGTTTTTTAGGAAACAATATATCTAGATTTTGAGCTTCGTTATAAGGGGGATCATGTTCAATGTCCTAGTATTGGCAATGTGTCTAAGTTGCTACATATTCCACTGGCTCTTTTGTTTTATCTACTGAATGATGCTTTGACTTGGGCCTCTCTGAAGTTACTTTCTTTCATGTTGTGTCAACAATTTTCTTGTATAACATCTGCCACAATAGCTTTCCTACTCTCAGCCAATCAAAAAAGTCCTTTATAATCTCTTTTTGAAGCTCTCTTTGTCTTTCATTCCATCCATGGAAAAGCCATTTATAACTGCATTGTGGTATCTTATCTGTAAGTTATTATTCCCTTGCTGATAA

mRNA sequence

ATGGGGACGGTGAAGAAGGAGTTCGCTGTTCCGCCAGTGGTTTTTCCCTCTGGCGGTAACCCCAATCTTCAACAACGGCGGGGTGTGGCGACGGCGCCGTTTCAGCCTCCTCGGCAGACTGGCTCCAGCATTCCGTTTATGTCATTTGACATCGGATCCGCCGCTGCTGCTTCCACATCCTCCGGCAGTATCTATGGTGGTCCTATTGGTGGTGGGTCTATCCCTGGTGGTGCTAATTTCGAAGACGAAGAACCCCTCCTCGATGAACTCGGGATCCACCCTGATCAAATCTGGAAGAAAACCAAGTCGATCTTGAATCCGTTCCGGGTCAAACCCGATGTGCACAAGGACTCGGACTTGTCTGGACCGATTCTCTTATATATGTTCTTTGGCCTCTTCCAGTTGCTTGCCGGTAAGATCCAATTCGGCGTGATACTGGGATGGATCGTGGTTTCTTCCATCTTTCTGTATGTTGTGTTCAATATGTTGGCCGGGCGGAATGGTAATTTGAATCTTCACACGTGTACTAGCGTGGTTGGGTACTGTATGTTGCCTGTCGTGGTTTTGTCGGCTGTGTCTTTGTTCCTGCCGCAAGCCGGTCTAGTGAGATTCGCAGTTGCTGGAGTTTTTGTGTTGTGGGCGACGAGGATCTGTACGAGTCTTATGGTTTCTCTTGCTGATGGTGGGGATGAGCACCGTGGCTTGATAGCGTTTTTGTTGTGGAAAAATCAAGTCTCAAGGCATCAACCTCAAAAGCCTGTCAATGGTTGCCTGCTAGTATACAATCAATATATTTAG

Coding sequence (CDS)

ATGGGGACGGTGAAGAAGGAGTTCGCTGTTCCGCCAGTGGTTTTTCCCTCTGGCGGTAACCCCAATCTTCAACAACGGCGGGGTGTGGCGACGGCGCCGTTTCAGCCTCCTCGGCAGACTGGCTCCAGCATTCCGTTTATGTCATTTGACATCGGATCCGCCGCTGCTGCTTCCACATCCTCCGGCAGTATCTATGGTGGTCCTATTGGTGGTGGGTCTATCCCTGGTGGTGCTAATTTCGAAGACGAAGAACCCCTCCTCGATGAACTCGGGATCCACCCTGATCAAATCTGGAAGAAAACCAAGTCGATCTTGAATCCGTTCCGGGTCAAACCCGATGTGCACAAGGACTCGGACTTGTCTGGACCGATTCTCTTATATATGTTCTTTGGCCTCTTCCAGTTGCTTGCCGGTAAGATCCAATTCGGCGTGATACTGGGATGGATCGTGGTTTCTTCCATCTTTCTGTATGTTGTGTTCAATATGTTGGCCGGGCGGAATGGTAATTTGAATCTTCACACGTGTACTAGCGTGGTTGGGTACTGTATGTTGCCTGTCGTGGTTTTGTCGGCTGTGTCTTTGTTCCTGCCGCAAGCCGGTCTAGTGAGATTCGCAGTTGCTGGAGTTTTTGTGTTGTGGGCGACGAGGATCTGTACGAGTCTTATGGTTTCTCTTGCTGATGGTGGGGATGAGCACCGTGGCTTGATAGCGTTTTTGTTGTGGAAAAATCAAGTCTCAAGGCATCAACCTCAAAAGCCTGTCAATGGTTGCCTGCTAGTATACAATCAATATATTTAG

Protein sequence

MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTSSGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDLSGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAFLLWKNQVSRHQPQKPVNGCLLVYNQYI*

Homology

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BLAST of CsaV3_3G037170 vs. NCBI nr
Match: KGN59279.2 (hypothetical protein Csa_001750 [Cucumis sativus])

HSP 1 Score: 531.2 bits (1367), Expect = 5.2e-147
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAFLL 240
           YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAFLL
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAFLL 240

Query: 241 WKNQVSRHQPQKPVNGCLLVYNQYI 266
           WKNQVSRHQPQKPVNGCLLVYNQYI
Sbjct: 241 WKNQVSRHQPQKPVNGCLLVYNQYI 265

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BLAST of CsaV3_3G037170 vs. NCBI nr
Match: XP_004153735.2 (protein YIPF5 homolog [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 1.1e-128
Identity = 237/238 (99.58%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
           YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIA+
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAY 238

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BLAST of CsaV3_3G037170 vs. NCBI nr
Match: XP_008442831.1 (PREDICTED: protein YIPF5 homolog [Cucumis melo])

HSP 1 Score: 469.2 bits (1206), Expect = 2.4e-128
Identity = 236/238 (99.16%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
           YCMLPVVVLSAVSLFLPQAGL+RFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIA+
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLLRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAY 238

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BLAST of CsaV3_3G037170 vs. NCBI nr
Match: KAA0043892.1 (protein YIPF5-like protein [Cucumis melo var. makuwa] >TYK25245.1 protein YIPF5-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 469.2 bits (1206), Expect = 2.4e-128
Identity = 240/258 (93.02%), Postives = 242/258 (93.80%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAFLL 240
           YCMLPVVVLSAVSLFLPQAGL+RFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIA   
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLLRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAV-- 240

Query: 241 WKNQVSRHQPQKPVNGCL 259
                       P+N CL
Sbjct: 241 ------------PMNNCL 244

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BLAST of CsaV3_3G037170 vs. NCBI nr
Match: XP_038903090.1 (protein YIPF5 homolog [Benincasa hispida])

HSP 1 Score: 466.1 bits (1198), Expect = 2.1e-127
Identity = 233/238 (97.90%), Postives = 237/238 (99.58%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPR TGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRPTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SGSIYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFR+KPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSVPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRIKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
           YCMLPVV+LSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIA+
Sbjct: 181 YCMLPVVLLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAY 238

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BLAST of CsaV3_3G037170 vs. ExPASy Swiss-Prot
Match: Q54QY3 (Protein YIPF5 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf5 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-23
Identity = 68/186 (36.56%), Postives = 113/186 (60.75%), Query Frame = 0


Query: 58  STSSGSIYG--GPIGGGSIPGGA--NFEDEEPLLDELGIHPDQIWKKTKSILNPF-RVKP 117
           ST  G+ Y   G +GGG   GG   +F++E PLL+ELGI+ D I  KT S+LNP  ++  
Sbjct: 15  STPQGAYYDNTGRMGGGGGMGGPTDSFDNELPLLEELGINFDHIRSKTLSVLNPLKKIDS 74

Query: 118 DVHKDSDLSGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNL 177
            +  D+DL GPIL  +  G   L++GKIQFG I G  ++  + +Y+V N+++ +   +++
Sbjct: 75  HIMDDTDLGGPILFGLLLGFSLLMSGKIQFGYIYGLGLIGCVSMYIVLNLMSEK--GIDI 134

Query: 178 HTCTSVVGYCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEH 237
           +   SV+GYC+LP++ LS  SL +   G+V + + G  ++W+T   + + V +    D+ 
Sbjct: 135 YRVISVLGYCLLPMIFLSFTSLIININGMVGYILIGFAIVWSTYSASKMFVKVLSMIDQ- 194

Query: 238 RGLIAF 239
           R L+A+
Sbjct: 195 RILVAY 197

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BLAST of CsaV3_3G037170 vs. ExPASy Swiss-Prot
Match: Q66KA5 (Protein YIPF5 OS=Xenopus tropicalis OX=8364 GN=yipf5 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-21
Identity = 54/163 (33.13%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 77  GANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKP-DVHKDSDLSGPILLYMFFGLFQL 136
           G+ F+DE PLL+ELGI+ D IW+KT ++L+P +V   ++  ++DL+GP++  + FG   L
Sbjct: 82  GSTFDDEPPLLEELGINFDHIWQKTLTVLHPLKVADGNIMNETDLAGPMVFCLAFGATLL 141

Query: 137 LAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLF 196
           LAGKIQFG + G   +  + +Y + N+++     ++    +SV+GYC+LP+++LS+ ++ 
Sbjct: 142 LAGKIQFGYVYGISAIGCLGMYCLLNLMS--MTGVSFGCVSSVLGYCLLPMIILSSFAVI 201

Query: 197 LPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
               G++   +A + + W +   + + +S A   D  + L+A+
Sbjct: 202 FSLQGILGIVLAALIIGWCSFSASKIFIS-ALAMDGQQVLVAY 241

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BLAST of CsaV3_3G037170 vs. ExPASy Swiss-Prot
Match: Q8N8F6 (Protein YIPF7 OS=Homo sapiens OX=9606 GN=YIPF7 PE=1 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-20
Identity = 50/147 (34.01%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 79  NFEDEEPLLDELGIHPDQIWKKTKSILNPFR-VKPDVHKDSDLSGPILLYMFFGLFQLLA 138
           +F++E PLL+ELGIH D IW+KT ++LNP + V   +  ++DL+GPIL  +  G   LLA
Sbjct: 108 SFDEEPPLLEELGIHFDHIWQKTLTVLNPMKPVDGSIMNETDLTGPILFCVALGATLLLA 167

Query: 139 GKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLFLP 198
           GK+QFG + G   +  + ++ + N+++  +  ++     SV+GYC+LP+V+LS  ++F  
Sbjct: 168 GKVQFGYVYGMSAIGCLVIHALLNLMS--SSGVSYGCVASVLGYCLLPMVILSGCAMFFS 227

Query: 199 QAGLVRFAVAGVFVLWATRICTSLMVS 225
             G+     + V + W +   + + ++
Sbjct: 228 LQGIFGIMSSLVIIGWCSLSASKIFIA 252

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BLAST of CsaV3_3G037170 vs. ExPASy Swiss-Prot
Match: Q7SXS2 (Protein YIPF5 OS=Xenopus laevis OX=8355 GN=yipf5 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-20
Identity = 50/149 (33.56%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 77  GANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKP-DVHKDSDLSGPILLYMFFGLFQL 136
           G+ F+DE PLL+ELGI+ D IW+KT ++L+P +V    +  ++DL+GP++  + FG   L
Sbjct: 82  GSTFDDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLL 141

Query: 137 LAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLF 196
           LAGKIQFG + G   +  + +Y + N+++     ++    +SV+GYC+LP+++LS  ++ 
Sbjct: 142 LAGKIQFGYVYGISAMGCLGMYCLLNLMS--MTGVSFGCVSSVLGYCLLPMIILSTFAVI 201

Query: 197 LPQAGLVRFAVAGVFVLWATRICTSLMVS 225
               G++   +A + + W +   + + +S
Sbjct: 202 FSLQGILGIVLAALIIGWCSFSASKIFIS 228

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BLAST of CsaV3_3G037170 vs. ExPASy Swiss-Prot
Match: Q5E9E8 (Protein YIPF5 OS=Bos taurus OX=9913 GN=YIPF5 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.7e-20
Identity = 51/149 (34.23%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 77  GANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKP-DVHKDSDLSGPILLYMFFGLFQL 136
           G NFEDE PLL+ELGI+ D IW+KT ++L+P +V    +  ++DL+GP++  + FG   L
Sbjct: 83  GNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGATLL 142

Query: 137 LAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVGYCMLPVVVLSAVSLF 196
           LAGKIQFG + G   +  + ++ + N+++     ++     SV+GYC+LP+++LS+ ++ 
Sbjct: 143 LAGKIQFGYVYGISAIGCLGMFCLLNLMS--MTGVSFGCVASVLGYCLLPMILLSSFAVI 202

Query: 197 LPQAGLVRFAVAGVFVLWATRICTSLMVS 225
               G+V   +    + W +   + + +S
Sbjct: 203 FSLQGMVGIILTAGIIGWCSFSASKIFIS 229

[Close]

BLAST of CsaV3_3G037170 vs. ExPASy TrEMBL
Match: A0A0A0LGM5 (Protein YIP OS=Cucumis sativus OX=3659 GN=Csa_3G776330 PE=3 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 5.3e-129
Identity = 237/238 (99.58%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
           YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIA+
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAY 238

[Close]

BLAST of CsaV3_3G037170 vs. ExPASy TrEMBL
Match: A0A5D3DNR0 (Protein YIP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003780 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.2e-128
Identity = 240/258 (93.02%), Postives = 242/258 (93.80%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAFLL 240
           YCMLPVVVLSAVSLFLPQAGL+RFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIA   
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLLRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAV-- 240

Query: 241 WKNQVSRHQPQKPVNGCL 259
                       P+N CL
Sbjct: 241 ------------PMNNCL 244

[Close]

BLAST of CsaV3_3G037170 vs. ExPASy TrEMBL
Match: A0A1S3B7C5 (Protein YIP OS=Cucumis melo OX=3656 GN=LOC103486599 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.2e-128
Identity = 236/238 (99.16%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
           YCMLPVVVLSAVSLFLPQAGL+RFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIA+
Sbjct: 181 YCMLPVVVLSAVSLFLPQAGLLRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAY 238

[Close]

BLAST of CsaV3_3G037170 vs. ExPASy TrEMBL
Match: A0A6J1CU38 (Protein YIP OS=Momordica charantia OX=3673 GN=LOC111014238 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 3.0e-124
Identity = 230/238 (96.64%), Postives = 233/238 (97.90%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNLQQRR VATAPFQPPR TGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRR-VATAPFQPPRSTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           S  IYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SAGIYGGPIGGGSLPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
           YCMLPVVVLSAVSLFLPQ G+VRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIA+
Sbjct: 181 YCMLPVVVLSAVSLFLPQTGIVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAY 237

[Close]

BLAST of CsaV3_3G037170 vs. ExPASy TrEMBL
Match: A0A6J1J6R1 (Protein YIP OS=Cucurbita maxima OX=3661 GN=LOC111481733 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 8.7e-124
Identity = 228/238 (95.80%), Postives = 232/238 (97.48%), Query Frame = 0


Query: 1   MGTVKKEFAVPPVVFPSGGNPNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTS 60
           MGTVKKEFAVPPVVFPSGGNPNL Q RGVATAPFQPPR TGSSIPFMSFDIGSAAAASTS
Sbjct: 1   MGTVKKEFAVPPVVFPSGGNPNLHQ-RGVATAPFQPPRSTGSSIPFMSFDIGSAAAASTS 60

Query: 61  SGSIYGGPIGGGSIPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120
           SG IYGGPIGGGS+PGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL
Sbjct: 61  SGGIYGGPIGGGSVPGGANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 120

Query: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180
           SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG
Sbjct: 121 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 180

Query: 181 YCMLPVVVLSAVSLFLPQAGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
           YCMLPVVV SAVSLFLPQAG++RF VAGVFVLWATRICTSLMVSLADGGDEHRGLIA+
Sbjct: 181 YCMLPVVVFSAVSLFLPQAGILRFGVAGVFVLWATRICTSLMVSLADGGDEHRGLIAY 237

[Close]

BLAST of CsaV3_3G037170 vs. TAIR 10
Match: AT2G36300.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 343.6 bits (880), Expect = 1.4e-94
Identity = 182/239 (76.15%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 6   KEFAVPPVVFPSGGN---PNLQQRRGVATAPFQPPRQTGSSIPFMSFDIGSAAAASTSSG 65
           K+FAVPPVVFPSGG+    N+QQRR  AT PFQPPR + S+IPFMSFDIGSAAA+S +  
Sbjct: 3   KDFAVPPVVFPSGGSSGGANVQQRRFPAT-PFQPPRPSSSAIPFMSFDIGSAAASSATPA 62

Query: 66  SIYGGPIGGGSIPGG--ANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKDSDL 125
             +GG I   S  GG  A+FEDEEPLLDELGIHPDQIWKKT+SILNPFR+   VHKDSDL
Sbjct: 63  GPFGGTIASSSSFGGGSASFEDEEPLLDELGIHPDQIWKKTRSILNPFRINQAVHKDSDL 122

Query: 126 SGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSVVG 185
           SGPI LY+   LFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTS+VG
Sbjct: 123 SGPIFLYLALCLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTSLVG 182

Query: 186 YCMLPVVVLSAVSLFLPQ-AGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLIAF 239
           YC+LPVVVLSAVSLF+PQ AG VRF +A +FVLW+TR C++L+VSLADGG+EHRGLIA+
Sbjct: 183 YCLLPVVVLSAVSLFVPQGAGPVRFVLAALFVLWSTRACSTLVVSLADGGEEHRGLIAY 240

[Close]

BLAST of CsaV3_3G037170 vs. TAIR 10
Match: AT3G52760.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 313.2 bits (801), Expect = 2.1e-85
Identity = 169/242 (69.83%), Postives = 196/242 (80.99%), Query Frame = 0


Query: 6   KEFAVPPVVFPSGGN----PNLQQRRGVATAPFQPPRQT--GSSIPFMSFDIGSAAAAST 65
           K+F +PPVVFP+ G+     N+QQRR V TAP+QPPRQ+   SSIPF+ F+IGS AA S 
Sbjct: 3   KDFPIPPVVFPTSGSSPATANVQQRR-VPTAPYQPPRQSSASSSIPFIPFEIGS-AAVSM 62

Query: 66  SSGSIYGGPIGGGSIPGG--ANFEDEEPLLDELGIHPDQIWKKTKSILNPFRVKPDVHKD 125
            +G   G      S   G  A+FEDEEPLLDELGIHPDQIWKKT+SILNPFR+   VHKD
Sbjct: 63  PAGPFDGTIASSASFGRGVSASFEDEEPLLDELGIHPDQIWKKTRSILNPFRINQTVHKD 122

Query: 126 SDLSGPILLYMFFGLFQLLAGKIQFGVILGWIVVSSIFLYVVFNMLAGRNGNLNLHTCTS 185
           SDLSGPI LY+   LFQLLAGKIQFGVILGW+VVSSIFLY+VFNMLAGRNGNLNLHTCTS
Sbjct: 123 SDLSGPIFLYLALCLFQLLAGKIQFGVILGWVVVSSIFLYIVFNMLAGRNGNLNLHTCTS 182

Query: 186 VVGYCMLPVVVLSAVSLFLPQ-AGLVRFAVAGVFVLWATRICTSLMVSLADGGDEHRGLI 239
           +VGY +LPVV+LSAVSLF+PQ AG VRF +   FVLWATR C++L+VSLADGG+EHRGLI
Sbjct: 183 LVGYSLLPVVILSAVSLFVPQGAGPVRFVLGAAFVLWATRACSNLVVSLADGGEEHRGLI 242

The following BLAST results are available for this feature:

BLAST of CsaV3_3G037170 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59279.2	5.2e-147	100.00	hypothetical protein Csa_001750 [Cucumis sativus]	[more]
XP_004153735.2	1.1e-128	99.58	protein YIPF5 homolog [Cucumis sativus]	[more]
XP_008442831.1	2.4e-128	99.16	PREDICTED: protein YIPF5 homolog [Cucumis melo]	[more]
KAA0043892.1	2.4e-128	93.02	protein YIPF5-like protein [Cucumis melo var. makuwa] >TYK25245.1 protein YIPF5-...	[more]
XP_038903090.1	2.1e-127	97.90	protein YIPF5 homolog [Benincasa hispida]	[more]

BLAST of CsaV3_3G037170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54QY3	2.2e-23	36.56	Protein YIPF5 homolog OS=Dictyostelium discoideum OX=44689 GN=yipf5 PE=3 SV=1	[more]
Q66KA5	2.7e-21	33.13	Protein YIPF5 OS=Xenopus tropicalis OX=8364 GN=yipf5 PE=2 SV=1	[more]
Q8N8F6	2.3e-20	34.01	Protein YIPF7 OS=Homo sapiens OX=9606 GN=YIPF7 PE=1 SV=2	[more]
Q7SXS2	3.0e-20	33.56	Protein YIPF5 OS=Xenopus laevis OX=8355 GN=yipf5 PE=2 SV=1	[more]
Q5E9E8	8.7e-20	34.23	Protein YIPF5 OS=Bos taurus OX=9913 GN=YIPF5 PE=2 SV=1	[more]

BLAST of CsaV3_3G037170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGM5	5.3e-129	99.58	Protein YIP OS=Cucumis sativus OX=3659 GN=Csa_3G776330 PE=3 SV=1	[more]
A0A5D3DNR0	1.2e-128	93.02	Protein YIP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003780 P...	[more]
A0A1S3B7C5	1.2e-128	99.16	Protein YIP OS=Cucumis melo OX=3656 GN=LOC103486599 PE=3 SV=1	[more]
A0A6J1CU38	3.0e-124	96.64	Protein YIP OS=Momordica charantia OX=3673 GN=LOC111014238 PE=3 SV=1	[more]
A0A6J1J6R1	8.7e-124	95.80	Protein YIP OS=Cucurbita maxima OX=3661 GN=LOC111481733 PE=3 SV=1	[more]

BLAST of CsaV3_3G037170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36300.1	1.4e-94	76.15	Integral membrane Yip1 family protein	[more]
AT3G52760.1	2.1e-85	69.83	Integral membrane Yip1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006977	Yip1 domain	PFAM	PF04893	Yip1	coord: 128..237 e-value: 1.9E-7 score: 31.1
None	No IPR available	PANTHER	PTHR21236	GOLGI MEMBRANE PROTEIN YIP1	coord: 6..241
None	No IPR available	PANTHER	PTHR21236:SF21	PROTEIN YIPF	coord: 6..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G037170.1	CsaV3_3G037170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane