CsaV3_3G034500 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G034500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Dynein light chain
Location	chr3: 29238487 .. 29239454 (-)
RNA-Seq Expression	CsaV3_3G034500
Synteny	CsaV3_3G034500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGGGCAAAGCTGTGGTTCGCGAAACAGACATGCCACAGGGGATCCAGAGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCTGACTGTCAATCTATTGCACATTTTATCAAACAGGTTTATTTTCTTTTAACATTCAGAATCTTCTTTATGTAGTGGTTTAAATGTTTATTTTATTAAATTAATTATATGCTCTTTTCACCCTTCTTTTTTTTTTTCATAAAAGGAAGACACGTCCTTTCGTTGCAATAATAGTTTGAAAAGATTCATTTTTGTATCCTGTAAAAAGTTACAGACACCCTTTTATGATATAAAGAAGATATGCCTCATCTTTCACAGTAAACACATCAATAAACAAAGTTACCTTTTCCTTTTAAAATATTCGAGTGTGCCTCGTTTTCAGATACTATAAATTTCTACTCACACAACACGTAGAGATGATCTATGTACACGTCATCCACTATCTGATCCGATGAGACTAAATCTGGAATATACTTTGTGTGGATCATGTTTGAATCGATTTGTCTGAAGAGTAAAGGGACATCGTTTTGAATGAAATAACTCAGGAAGTTCCCATGTTCATCATTTCTTCCTTTTTGCTGGTCTATTAACAATCTCAGTATGATAATGAGAAAAAGGTGCTAGATATCAATTACATACTAAAAAGTGGACCGACCCGTGACACGTTAATGAAAGATTACAATATACTGTCTTATATTAAATTGCATAGTTATACGACTTTGTGCTTTGATCAATAGAGGTTTGATGAAGCTTATGGCCCAGCATGGCATTGTGTGGCGGGCAAAGCGTTTGGAGGTTGCATTACACATCTATGTGGGAGTTACATCTTCTTCCATGTGGACACGATGGAGTTTCTCGTCTTTAAGGACGGAAGAGACTGCTTCAAAAGTGTCGAAGAGACTGTTGGAGTTTGCCGGAAATATTAA

mRNA sequence

ATGTTGGAGGGCAAAGCTGTGGTTCGCGAAACAGACATGCCACAGGGGATCCAGAGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCTGACTGTCAATCTATTGCACATTTTATCAAACAGAGGTTTGATGAAGCTTATGGCCCAGCATGGCATTGTGTGGCGGGCAAAGCGTTTGGAGGTTGCATTACACATCTATGTGGGAGTTACATCTTCTTCCATGTGGACACGATGGAGTTTCTCGTCTTTAAGGACGGAAGAGACTGCTTCAAAAGTGTCGAAGAGACTGTTGGAGTTTGCCGGAAATATTAA

Coding sequence (CDS)

ATGTTGGAGGGCAAAGCTGTGGTTCGCGAAACAGACATGCCACAGGGGATCCAGAGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCTGACTGTCAATCTATTGCACATTTTATCAAACAGAGGTTTGATGAAGCTTATGGCCCAGCATGGCATTGTGTGGCGGGCAAAGCGTTTGGAGGTTGCATTACACATCTATGTGGGAGTTACATCTTCTTCCATGTGGACACGATGGAGTTTCTCGTCTTTAAGGACGGAAGAGACTGCTTCAAAAGTGTCGAAGAGACTGTTGGAGTTTGCCGGAAATATTAA

Protein sequence

MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVAGKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY*

Homology

[Close]

BLAST of CsaV3_3G034500 vs. NCBI nr
Match: KGN58830.1 (hypothetical protein Csa_001625 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 5.4e-58
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY 109
           GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY 108

[Close]

BLAST of CsaV3_3G034500 vs. NCBI nr
Match: XP_008442502.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-56
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY 109
           GKAFGGCITHLCGS+IFFHVDTMEFLVFKDGRDC KSVEETVGVCRKY
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY 108

[Close]

BLAST of CsaV3_3G034500 vs. NCBI nr
Match: XP_022145583.1 (dynein light chain-like [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKA VRETDMP+GIQSHVLELAYKALD HEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 108
           GKAFGGCITHLCGS+IFFHVD MEFL+FKDGRD  KS+EET+GV +K
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQK 107

[Close]

BLAST of CsaV3_3G034500 vs. NCBI nr
Match: KAA8518956.1 (hypothetical protein F0562_016270 [Nyssa sinensis])

HSP 1 Score: 184.1 bits (466), Expect = 6.4e-43
Identity = 82/107 (76.64%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAV+RETDMP+ +QSHV+ELAY+ALD HE SDCQSIAH+IKQ+FDEAYGPAWHCV 
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 108
           GK FG CITHLCGS+IFF VD MEFLVFKDG+D  +S EE +GV +K
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQK 107

[Close]

BLAST of CsaV3_3G034500 vs. NCBI nr
Match: XP_004305172.1 (PREDICTED: dynein light chain LC6, flagellar outer arm-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 181.4 bits (459), Expect = 4.1e-42
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMP  +QSH +ELAYKALD HEVSDC+SIAH+IKQ+FDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMPTLMQSHAMELAYKALDLHEVSDCRSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGV 105
           GK FG CITHLCGS+IFFHV+ MEFL+FKDG D  KS EE +GV
Sbjct: 61  GKDFGSCITHLCGSFIFFHVEMMEFLIFKDGTDSCKSREEAIGV 104

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy Swiss-Prot
Match: Q94758 (Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-14
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M E KAV++  DM + +Q   + +A  A+D+H++   + IA  IK+ FD  Y P WHC+ 
Sbjct: 1  MSERKAVIKNADMSEEMQEDAIHIAAGAIDKHDLE--KDIAANIKKDFDRKYHPTWHCIV 60

Query: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFKDG 92
          G+ FG  +TH   ++I+F++D   FL+FK G
Sbjct: 61 GRHFGSYVTHETHNFIYFYLDDRAFLLFKSG 89

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy Swiss-Prot
Match: Q94748 (Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M E KAV++  DM + +Q   +  A  ALD++E+   + +A +IK+ FD  Y P WHC+ 
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEIE--KDVAAYIKKEFDRKYNPNWHCIV 60

Query: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFKDG 92
          GK FG  +TH    +I+F++    FL+FK G
Sbjct: 61 GKHFGSYVTHETQHFIYFYLQERAFLLFKSG 89

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-14
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M E KAV++  DMP+ +Q   ++ A +AL++  +   + IA +IK+ FD+ Y P WHC+ 
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFKDG 92
          G+ FG  +TH    +I+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13
Identity = 32/91 (35.16%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M++ KAV++  DM   +Q   ++ A +AL+++ +   + IA +IK+ FD+ Y P WHC+ 
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFKDG 92
          G+ FG  +TH    +I+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-13
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M + KAV++  DM + +Q   ++ A +AL+++ +   + IA FIK+ FD+ Y P WHC+ 
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFKDG 92
          G+ FG  +TH    +I+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy TrEMBL
Match: A0A0A0LA26 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.6e-58
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY 109
           GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY 108

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy TrEMBL
Match: A0A1S3B5U2 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 6.4e-57
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY 109
           GKAFGGCITHLCGS+IFFHVDTMEFLVFKDGRDC KSVEETVGVCRKY
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY 108

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy TrEMBL
Match: A0A6J1CWC6 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.4e-49
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKA VRETDMP+GIQSHVLELAYKALD HEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 108
           GKAFGGCITHLCGS+IFFHVD MEFL+FKDGRD  KS+EET+GV +K
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQK 107

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy TrEMBL
Match: A0A5J4ZMN8 (Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.1e-43
Identity = 82/107 (76.64%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAV+RETDMP+ +QSHV+ELAY+ALD HE SDCQSIAH+IKQ+FDEAYGPAWHCV 
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 108
           GK FG CITHLCGS+IFF VD MEFLVFKDG+D  +S EE +GV +K
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQK 107

[Close]

BLAST of CsaV3_3G034500 vs. ExPASy TrEMBL
Match: W9QN85 (Dynein light chain OS=Morus notabilis OX=981085 GN=L484_016957 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42
Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDM Q +QSHV+ELAYKALD HEVSDCQSIAH+IKQ+FDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMSQIMQSHVMELAYKALDLHEVSDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRK 108
           G  FG CITHLCGS+IFFHV+ MEFL+FKDG+D  +S +E +GV ++
Sbjct: 61  GNDFGSCITHLCGSFIFFHVEMMEFLIFKDGKDINESKDEAIGVLKR 107

[Close]

BLAST of CsaV3_3G034500 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 97.1 bits (240), Expect = 9.6e-21
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          MLEGKA+V ++DMP  +Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CV 
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFK 90
          G  FG   TH  G++I+F ++T++FL+FK
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of CsaV3_3G034500 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-20
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          MLEGKA V ETDMP  +Q   +++A ++LD  +V D  SIA  IK+ FDE YG  W CV 
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFK 90
          G  FG   TH  G++I+FH+ T+ FL+FK
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of CsaV3_3G034500 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          MLEGKAV+ +TDM Q ++   L LA KALD  +V++   IA FIK+ FD +YG  W C+ 
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GKAFGGCITHLCGSYIFFHVDTMEFLVFK 90
          G  FG  +TH  G +I F V ++  L+FK
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89

[Close]

BLAST of CsaV3_3G034500 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-14
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 12  DMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVAGKAFGGCITHL 71
           DMP  +Q+H    A   LD  E    + +A  +K+ FD+ YGPAWHC+ G +FG  +TH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  CGSYIFFHVDTMEFLVFK 90
            G +I+F +D +  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of CsaV3_3G034500 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 73.9 bits (180), Expect = 8.7e-14
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 8   VRETDMPQGIQSHVLELAYKALDQHE-VSDCQSIAHFIKQRFDEAYGPAWHCVAGKAFGG 67
           VR +DMP   Q+    L+ + L+     +D + +AH +K+ FD AYGPAWHC+ G +FG 
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 68  CITHLCGSYIFFHVDTMEFLVFK 90
            +TH  G +++F +D +  L+FK
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFK 120

The following BLAST results are available for this feature:

BLAST of CsaV3_3G034500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58830.1	5.4e-58	100.00	hypothetical protein Csa_001625 [Cucumis sativus]	[more]
XP_008442502.1	1.3e-56	98.15	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]	[more]
XP_022145583.1	1.7e-48	86.92	dynein light chain-like [Momordica charantia]	[more]
KAA8518956.1	6.4e-43	76.64	hypothetical protein F0562_016270 [Nyssa sinensis]	[more]
XP_004305172.1	4.1e-42	78.85	PREDICTED: dynein light chain LC6, flagellar outer arm-like [Fragaria vesca subs...	[more]

BLAST of CsaV3_3G034500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94758	1.0e-14	39.56	Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1	[more]
Q94748	2.2e-14	39.56	Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1	[more]
O02414	2.9e-14	37.36	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q22799	1.1e-13	35.16	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
O96860	1.1e-13	36.26	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]

BLAST of CsaV3_3G034500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA26	2.6e-58	100.00	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1	[more]
A0A1S3B5U2	6.4e-57	98.15	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1	[more]
A0A6J1CWC6	8.4e-49	86.92	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1	[more]
A0A5J4ZMN8	3.1e-43	76.64	Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1	[more]
W9QN85	2.0e-42	75.70	Dynein light chain OS=Morus notabilis OX=981085 GN=L484_016957 PE=3 SV=1	[more]

BLAST of CsaV3_3G034500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	9.6e-21	49.44	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	4.8e-20	50.56	Dynein light chain type 1 family protein	[more]
AT4G27360.1	2.0e-18	47.19	Dynein light chain type 1 family protein	[more]
AT5G20110.1	3.9e-14	41.03	Dynein light chain type 1 family protein	[more]
AT1G23220.1	8.7e-14	39.76	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 5.2E-37 score: 138.9
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 5.4E-29 score: 100.4
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..107
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 4.0E-29 score: 102.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF85	DYNEIN LIGHT CHAIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G034500.1	CsaV3_3G034500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex