CsaV3_3G033130 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G033130
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L35
Location	chr3: 28581586 .. 28582937 (-)
RNA-Seq Expression	CsaV3_3G033130
Synteny	CsaV3_3G033130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCGGTGTCATGTATGGCAATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCAGGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGTATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTAAAGAAGCATTTGGGACATCGCCGATCTAAATTCCCACATGCTGAATCTAGATATCGGTCTTGGCATGTTGGCCTTCTGGTACGGAATAAATCATGGCATGAGGAATTTTCATTCAATTTATAAGAAAAATTATTGTTGATTGTTGATTGATGTGCAGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGAGCTTGCAAATGCCATTGGTCCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAGTACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCAATTTTTATGACATATTTCTTTTTCTTCCTTGTTCTGTTTTTCTCTTTTATCCAAATTCATCTCCCAATTTTTAAAAAAATTTATTTTATTATCTAAACCAACCATTTACATGAAAACTATTTTCGAAACAAAGTATATACAGTTTTTTTATCTTAATGTTTTCCAAAGAATTCTTGGATTGAAGGTAATCCAATGTCGACAAACTCAAGTTGTTTCAAAACAATTCTGCTCCATCGTCGTCTCCAGCACAAGAACCATCCACTTGTGAATGCAATAATACTCTTACCACGGGACATATACCCAAATCAATACTAAACAAAGATAATAAATTTACAAATATTTAGTCACATCAACGTCTCCTTATTTTTCCCATTTACCCAACTGACATTTCAGAGAGGGAAAAACGGTGCATCTCGAACTGAATTTGTTGTTTTGTCTCTCCTGGATCGATTTGAAGTTTCGATCGGTTACGTTGTTCCTGGATAAATACATCTTATTCCCGAATAAAAAGAAATGGAAGGAAAAAAGCCTACTTGGGCTACAAATAATAAATAAAAAATAGATTAAAAAGAAGTATTGATAGATATGTAACGAAATTAGAAGGATGAAGAGATTGAAATGGTTAGGAGAGTTTAAATTGAAATCAAAACATATCTCAATATACTTATTTGGTTACTCGTTTAGATACTGAAAAGAAAAAGAAAAAGAAAAAAT

mRNA sequence

ATGGCAATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCAGGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGTATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTAAAGAAGCATTTGGGACATCGCCGATCTAAATTCCCACATGCTGAATCTAGATATCGGTCTTGGCATGTTGGCCTTCTGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGAGCTTGCAAATGCCATTGGTCCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAGTACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCAATTTTTATGA

Coding sequence (CDS)

ATGGCAATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCAGGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTCCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGTATCTCGGATCCTCCTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTAAAGAAGCATTTGGGACATCGCCGATCTAAATTCCCACATGCTGAATCTAGATATCGGTCTTGGCATGTTGGCCTTCTGGAACGAAGGTGTGTGGCTGCTTTTGGTGTGGGATTGGGTTATGTGGTTGTTGCACTCAAGACACAAATTGAGCTTGCAAATGCCATTGGTCCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTTTATGGCTCCAGAAATGTAAGTACCTTTGGGCAATGTTATTGCTAATTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCAATTTTTATGA

Protein sequence

MAMAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLRQFL*

Homology

[Close]

BLAST of CsaV3_3G033130 vs. NCBI nr
Match: KAE8650972.1 (hypothetical protein Csa_002588 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 2.0e-92
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAMAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILL 60
           MAMAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILL
Sbjct: 1   MAMAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILL 60

Query: 61  QRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALK 120
           QRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALK
Sbjct: 61  QRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALK 120

Query: 121 TQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHL 180
           TQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHL
Sbjct: 121 TQIELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHL 180

Query: 181 RQFL 185
           RQFL
Sbjct: 181 RQFL 184

[Close]

BLAST of CsaV3_3G033130 vs. NCBI nr
Match: XP_008442323.1 (PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 1.9e-71
Identity = 151/181 (83.43%), Postives = 161/181 (88.95%), Query Frame = 0


Query: 3   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 62
           MAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 63  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 122
           RRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQ 120

Query: 123 IELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLRQ 182
           I LANA+G SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLHLR 
Sbjct: 121 IGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRH 173

Query: 183 F 184
           F
Sbjct: 181 F 173

[Close]

BLAST of CsaV3_3G033130 vs. NCBI nr
Match: XP_038906422.1 (uncharacterized protein LOC120092221 [Benincasa hispida])

HSP 1 Score: 242.3 bits (617), Expect = 3.4e-60
Identity = 141/188 (75.00%), Postives = 151/188 (80.32%), Query Frame = 0


Query: 1   MAMAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILL 60
           +AMA+G RRSFKI+V AKICNLYIKLKATLK PSGK QRLLKLDKLLI  DSKS S IL+
Sbjct: 40  VAMALGFRRSFKITVHAKICNLYIKLKATLKPPSGKLQRLLKLDKLLIGADSKSESWILV 99

Query: 61  QRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALK 120
           QRRRTLKSRMLSFVKKHLG  RSK PHAES  +SW VG +E RCVA FGVGLGY ++AL 
Sbjct: 100 QRRRTLKSRMLSFVKKHLGCGRSKMPHAESENQSWDVGRMELRCVAFFGVGLGY-LLALN 159

Query: 121 TQIELANAIGPSFSSIIWVYLC--VFVLWLQKCK--YLWAMLLLIPLFPLLLFQLDTFVH 180
           T I L NAI PSFSS IWV LC  +FVLWL KCK  YLWA+L LI L PL L QLD FVH
Sbjct: 160 THIGLTNAIHPSFSSTIWVCLCLLLFVLWLHKCKYLYLWAILFLIALLPLFLLQLDKFVH 219

Query: 181 LLHLRQFL 185
           LLHLR FL
Sbjct: 220 LLHLRHFL 226

[Close]

BLAST of CsaV3_3G033130 vs. NCBI nr
Match: KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.9e-42
Identity = 102/129 (79.07%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MAMAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILL 60
           +AMAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+
Sbjct: 168 VAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLV 227

Query: 61  QRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALK 120
           QRRRTLKSRMLSFVKKHLG  RSK PH+ES+Y+ WHVG          GVG GY +VALK
Sbjct: 228 QRRRTLKSRMLSFVKKHLGRCRSKIPHSESKYQYWHVG-------HQIGVGFGY-LVALK 287

Query: 121 TQIELANAI 130
           TQI LANA+
Sbjct: 288 TQIGLANAV 288

[Close]

BLAST of CsaV3_3G033130 vs. NCBI nr
Match: TYK24910.1 (50S ribosomal protein L35 [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-41
Identity = 99/123 (80.49%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 6   GHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQRRRT 65
           GHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QRRRT
Sbjct: 7   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66

Query: 66  LKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQIEL 125
           LKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQI L
Sbjct: 67  LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQIGL 121

Query: 126 ANA 129
           ANA
Sbjct: 127 ANA 121

[Close]

BLAST of CsaV3_3G033130 vs. ExPASy TrEMBL
Match: A0A1S3B4Y8 (uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 9.2e-72
Identity = 151/181 (83.43%), Postives = 161/181 (88.95%), Query Frame = 0


Query: 3   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 62
           MAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 63  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 122
           RRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQ 120

Query: 123 IELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLRQ 182
           I LANA+G SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLHLR 
Sbjct: 121 IGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRH 173

Query: 183 F 184
           F
Sbjct: 181 F 173

[Close]

BLAST of CsaV3_3G033130 vs. ExPASy TrEMBL
Match: A0A0A0LCL9 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 3   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 62
           MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR
Sbjct: 1   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 60

Query: 63  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 122
           RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 120

Query: 123 IELANAIGPSFSSIIWVYLC 143
           IELANAIGPSFSSIIWVYLC
Sbjct: 121 IELANAIGPSFSSIIWVYLC 140

[Close]

BLAST of CsaV3_3G033130 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 9.0e-43
Identity = 102/129 (79.07%), Postives = 110/129 (85.27%), Query Frame = 0


Query: 1   MAMAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILL 60
           +AMAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+
Sbjct: 168 VAMAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLV 227

Query: 61  QRRRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALK 120
           QRRRTLKSRMLSFVKKHLG  RSK PH+ES+Y+ WHVG          GVG GY +VALK
Sbjct: 228 QRRRTLKSRMLSFVKKHLGRCRSKIPHSESKYQYWHVG-------HQIGVGFGY-LVALK 287

Query: 121 TQIELANAI 130
           TQI LANA+
Sbjct: 288 TQIGLANAV 288

[Close]

BLAST of CsaV3_3G033130 vs. ExPASy TrEMBL
Match: A0A5D3DNQ2 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00230 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 99/123 (80.49%), Postives = 105/123 (85.37%), Query Frame = 0


Query: 6   GHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQRRRT 65
           GHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QRRRT
Sbjct: 7   GHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRT 66

Query: 66  LKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQIEL 125
           LKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQI L
Sbjct: 67  LKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQIGL 121

Query: 126 ANA 129
           ANA
Sbjct: 127 ANA 121

The following BLAST results are available for this feature:

BLAST of CsaV3_3G033130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650972.1	2.0e-92	100.00	hypothetical protein Csa_002588 [Cucumis sativus]	[more]
XP_008442323.1	1.9e-71	83.43	PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo]	[more]
XP_038906422.1	3.4e-60	75.00	uncharacterized protein LOC120092221 [Benincasa hispida]	[more]
KAA0044224.1	1.9e-42	79.07	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]	[more]
TYK24910.1	4.6e-41	80.49	50S ribosomal protein L35 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G033130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G033130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4Y8	9.2e-72	83.43	uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=...	[more]
A0A0A0LCL9	1.2e-68	100.00	50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1	[more]
A0A5A7TM08	9.0e-43	79.07	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DNQ2	2.2e-41	80.49	50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CsaV3_3G033130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G033130.1	CsaV3_3G033130.1	mRNA