CsaV3_3G033050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G033050
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 28557361 .. 28557540 (-)
RNA-Seq ExpressionCsaV3_3G033050
SyntenyCsaV3_3G033050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCAGTTGTGGAAAGAAGTGGAATTCCATGGCGTAACTGGTAGTGGTAGGTCTTCTGACTCTAAGAAGGAGAACAAGACCGAACTCAATCCTCAATTAAGAAAGGGTGAAACTTGTGATGGGGTACCTAACAACAACAAGTGTCGGGACCAGAAGAAGTTGGTTGCTTATGTCCAA

mRNA sequence

ATGTTTCAGTTGTGGAAAGAAGTGGAATTCCATGGCGTAACTGGTAGTGGTAGGTCTTCTGACTCTAAGAAGGAGAACAAGACCGAACTCAATCCTCAATTAAGAAAGGGTGAAACTTGTGATGGGGTACCTAACAACAACAAGTGTCGGGACCAGAAGAAGTTGGTTGCTTATGTCCAA

Coding sequence (CDS)

ATGTTTCAGTTGTGGAAAGAAGTGGAATTCCATGGCGTAACTGGTAGTGGTAGGTCTTCTGACTCTAAGAAGGAGAACAAGACCGAACTCAATCCTCAATTAAGAAAGGGTGAAACTTGTGATGGGGTACCTAACAACAACAAGTGTCGGGACCAGAAGAAGTTGGTTGCTTATGTCCAA

Protein sequence

MFQLWKEVEFHGVTGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ
Homology
BLAST of CsaV3_3G033050 vs. NCBI nr
Match: KAE8650968.1 (hypothetical protein Csa_001944, partial [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 3.0e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MFQLWKEVEFHGVTGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 60
          MFQLWKEVEFHGVTGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ
Sbjct: 1  MFQLWKEVEFHGVTGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 60

BLAST of CsaV3_3G033050 vs. NCBI nr
Match: XP_022982599.1 (uncharacterized protein LOC111481426 [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 14  TGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 61
           TGSG+  D+KKE  TE +    K ETCDGVP+NNKCRDQKKL+A +Q
Sbjct: 104 TGSGKPFDTKKEKGTEASALSSKHETCDGVPDNNKCRDQKKLIACIQ 150

BLAST of CsaV3_3G033050 vs. NCBI nr
Match: XP_023528429.1 (uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 14  TGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 61
           TGSG+  D+KKEN TE +    K ETCDGVP+N KCRDQKKL+A +Q
Sbjct: 105 TGSGKPFDTKKENGTEASALSSKHETCDGVPDNKKCRDQKKLIACIQ 151

BLAST of CsaV3_3G033050 vs. NCBI nr
Match: KAG6580427.1 (hypothetical protein SDJN03_20429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-07
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 14  TGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 61
           TGSG+  D+KKEN TE +    K ETCDGVP+N KCRDQKKL+A +Q
Sbjct: 131 TGSGKPIDTKKENGTEASALSSKHETCDGVPDNKKCRDQKKLIACIQ 177

BLAST of CsaV3_3G033050 vs. NCBI nr
Match: KAG7017185.1 (hypothetical protein SDJN02_19047 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 14  TGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 61
           TGSG++ D+KKEN TE +    K ETCDGVP++ KCRDQKKL+A +Q
Sbjct: 105 TGSGKTIDTKKENGTEASALSSKHETCDGVPDDKKCRDQKKLIACIQ 151

BLAST of CsaV3_3G033050 vs. ExPASy TrEMBL
Match: A0A6J1J516 (uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 14  TGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 61
           TGSG+  D+KKE  TE +    K ETCDGVP+NNKCRDQKKL+A +Q
Sbjct: 104 TGSGKPFDTKKEKGTEASALSSKHETCDGVPDNNKCRDQKKLIACIQ 150

BLAST of CsaV3_3G033050 vs. ExPASy TrEMBL
Match: A0A6J1F4I5 (uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC111442092 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 14  TGSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 61
           TGSG+  D+KKEN TE +    K ETCDGVP+N KCRDQ KL+A +Q
Sbjct: 105 TGSGKPIDTKKENGTEASALSSKHETCDGVPDNKKCRDQNKLIACIQ 151

BLAST of CsaV3_3G033050 vs. ExPASy TrEMBL
Match: A0A6J1I2Q4 (uncharacterized protein LOC111470002 OS=Cucurbita maxima OX=3661 GN=LOC111470002 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 15  GSGRSSDSKKENKTELNPQLRKGETCDGVPNNNKCRDQKKLVAYVQ 61
           G+G+  D+ K N+TE   Q    E CDGVP+N KCRDQKKLVA ++
Sbjct: 105 GNGKPLDTNKRNRTEGGLQSSNREICDGVPDNKKCRDQKKLVACIE 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650968.13.0e-26100.00hypothetical protein Csa_001944, partial [Cucumis sativus][more]
XP_022982599.16.9e-0763.83uncharacterized protein LOC111481426 [Cucurbita maxima][more]
XP_023528429.16.9e-0763.83uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo][more]
KAG6580427.16.9e-0763.83hypothetical protein SDJN03_20429, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017185.11.5e-0661.70hypothetical protein SDJN02_19047 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J5163.4e-0763.83uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426... [more]
A0A6J1F4I51.3e-0661.70uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC1114420... [more]
A0A6J1I2Q43.5e-0454.35uncharacterized protein LOC111470002 OS=Cucurbita maxima OX=3661 GN=LOC111470002... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G033050.1CsaV3_3G033050.1mRNA