CsaV3_3G033040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G033040
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 28549492 .. 28549643 (-)
RNA-Seq ExpressionCsaV3_3G033040
SyntenyCsaV3_3G033040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCACCATTCCTCAGTCGACTGAAACAAGCAGGAAGCTGATATTAGATGATGGAAATGGAGAGTGCGTGCTCTACACAAGCTCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTCATTAGACCAGCTAGCAACACCAGTAACAG

mRNA sequence

ATCACCATTCCTCAGTCGACTGAAACAAGCAGGAAGCTGATATTAGATGATGGAAATGGAGAGTGCGTGCTCTACACAAGCTCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTCATTAGACCAGCTAGCAACACCAGTAACAG

Coding sequence (CDS)

ATCACCATTCCTCAGTCGACTGAAACAAGCAGGAAGCTGATATTAGATGATGGAAATGGAGAGTGCGTGCTCTACACAAGCTCTCTTGTTTCTGGACAAGACACTTTTTCTGCGTCTCCCCTCATTAGACCAGCTAGCAACACCAGTAACAG

Protein sequence

ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSNX
Homology
BLAST of CsaV3_3G033040 vs. NCBI nr
Match: KAE8650967.1 (hypothetical protein Csa_001119, partial [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 5.7e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSN 51
          ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSN
Sbjct: 1  ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASPLIRPASNTSN 50

BLAST of CsaV3_3G033040 vs. NCBI nr
Match: XP_023528429.1 (uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 9.4e-05
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASP 41
           ITIP +TETS KLILD GNGECVLY S LVSG++ F   P
Sbjct: 195 ITIPLTTETSMKLILDAGNGECVLYRSPLVSGENLFLHLP 234

BLAST of CsaV3_3G033040 vs. NCBI nr
Match: KAG7017185.1 (hypothetical protein SDJN02_19047 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 9.4e-05
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASP 41
           ITIP +TETS KLILD GNGECVLY S LVSG++ F   P
Sbjct: 195 ITIPLTTETSMKLILDAGNGECVLYRSPLVSGENLFLHLP 234

BLAST of CsaV3_3G033040 vs. NCBI nr
Match: KAG6580427.1 (hypothetical protein SDJN03_20429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASP 41
           ITIP +TETS KLILD GNGECVLY S LVSG++ F   P
Sbjct: 221 ITIPLTTETSYKLILDAGNGECVLYRSPLVSGENLFLHLP 260

BLAST of CsaV3_3G033040 vs. NCBI nr
Match: XP_022935129.1 (uncharacterized protein LOC111442092 [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASP 41
           ITIP +TETS KLILD GNGECVLY S LVSG++ F   P
Sbjct: 195 ITIPLTTETSYKLILDAGNGECVLYRSPLVSGENLFLHLP 234

BLAST of CsaV3_3G033040 vs. ExPASy TrEMBL
Match: A0A6J1F4I5 (uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC111442092 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASP 41
           ITIP +TETS KLILD GNGECVLY S LVSG++ F   P
Sbjct: 195 ITIPLTTETSYKLILDAGNGECVLYRSPLVSGENLFLHLP 234

BLAST of CsaV3_3G033040 vs. ExPASy TrEMBL
Match: A0A6J1FLM5 (uncharacterized protein LOC111446930 OS=Cucurbita moschata OX=3662 GN=LOC111446930 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASP 41
           ITIP +T    KL+LD GNGECVLYTS LVSG+D F   P
Sbjct: 194 ITIPLTTLKDMKLVLDAGNGECVLYTSPLVSGEDLFLHLP 233

BLAST of CsaV3_3G033040 vs. ExPASy TrEMBL
Match: A0A6J1J516 (uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.0e-04
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 1   ITIPQSTETSRKLILDDGNGECVLYTSSLVSGQDTFSASP 41
           ITIP +TETS KL+LD GNGECVLY S LVS ++ F   P
Sbjct: 194 ITIPLTTETSTKLVLDAGNGECVLYRSPLVSRENLFLHLP 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650967.15.7e-18100.00hypothetical protein Csa_001119, partial [Cucumis sativus][more]
XP_023528429.19.4e-0570.00uncharacterized protein LOC111791362 [Cucurbita pepo subsp. pepo][more]
KAG7017185.19.4e-0570.00hypothetical protein SDJN02_19047 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6580427.11.2e-0470.00hypothetical protein SDJN03_20429, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022935129.11.2e-0470.00uncharacterized protein LOC111442092 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F4I56.0e-0570.00uncharacterized protein LOC111442092 OS=Cucurbita moschata OX=3662 GN=LOC1114420... [more]
A0A6J1FLM53.9e-0465.00uncharacterized protein LOC111446930 OS=Cucurbita moschata OX=3662 GN=LOC1114469... [more]
A0A6J1J5165.0e-0465.00uncharacterized protein LOC111481426 OS=Cucurbita maxima OX=3661 GN=LOC111481426... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G033040.1CsaV3_3G033040.1mRNA