CsaV3_3G032260 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G032260
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Sm-like protein LSM7
Location	chr3: 27853578 .. 27857540 (-)
RNA-Seq Expression	CsaV3_3G032260
Synteny	CsaV3_3G032260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAATTTCGTAACGATTTCTTCAATTAGAATATTGATTATGGCAGGCTGATTACGAAGTATAATGTGGTATTCGTATCTTTTGTTTTATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGGTTATTTCTAATGATTATGCTTATAGTATTACTGGACGATTGTTTGCGCTTTGTTACTTCCCGATTAGTAAGCTTTTTATTAAAGTAATCGTCTGTTGCTGTTGAGAGGATCGAGGCATATAATCTAATGTTCGATGTTGATTTTGTTTTTCTTTATGGAGCTTTCTTTATTTTTAAATGCGAGGAAATTGCTTTGTGAACCTTAGTTTTCCATTTACAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGGTAACCAATTAACTGGATTCTGGCATAATATATGAGATTTGTGGAATTTTGTGGGCCTTTAGACTGTAAGCTCACTGAGTATTGATTAGTATTGTTCATATCGTTTTTCTCATTTATCATCACTTTTCTTTATCTGATTGCTATTTTAAATATATGAGAAACAATTAGAGTTAGTGTGAGAATCATTTGATATTGGATGAAAGACACTAATTAAGATTTTAATTTATCAGTAACATATGCAGGCGAAATAGTTTTCTATTGTATTAATTTATATACAGTTTTTCTATTAGAATAGATACTGGTTTATTTTCTGTTGATTTATCTGATTAAGATGTGGTGATGTGATAAATAACCTTTCATGTAAAACATTGTTTTTGCTTTGCATGTTTTCTTTAAATATAATTTGAATGGATATGTTTTTTCTTTCTTTCTTTCAATAGAAAAACAAACATGGCAATAATACGATGAACTATATGAATAATTCTGTTATTTTATTTTTATTTTGAACCTTGGATATATTTTTAATTTATATTAGGCTATTGCATAAATTAGCATGCGCAATTTGCATTGTTATCTTGCAAACCTTTGCATAACATAAATTTGGATTTTATTTGTATGCCCATATGCTGTTATGAGATTTCACTTGAATAAAAGTTGCAAATATGTGCAAATCTATATCGGTTTCATAATAATTTTCTTATATAAGAAGTCTTTCATAATTTATGAAAACCATGATTTTTTTCTTTCTATTGTAACTTCTAACTGGATGATTAATTAATTCATAGGGCATAAATGAAATTCTGATTGAACATGTATGTGTGTGCAATACATATAATAATAAGCAATCAATATGCATGGACAAAAGAGGAAGATAAGCTATCCCGTCTTCCAATAGGTCAATAAGGTTACTATAAGGCACTTCAATTGGTTAGAATCAGAAAGAGCTGTGACTGTTTTTGTTTCTTTTTTTGAAAAAACCAGTGGTTGACCTCTAGATTATTTAACATCACATCTTCAGTGAGTAGGGTCTGGGAATACATGTCAAGGGAAGTTTCAAGAACCTCCCATCTAGCATTTCCTACTGAAATACACAGCAACTATTTAGCTTATGTACACTCAAGATATGGCTAACTACCTCACCCATGTCTCTCACCCCCAAGTATGACAGACACCAACTAACTTTATTCTCTCACATTTACTCTCCCCTTACACACTGTACGCTCTGGCTGTTGAAGGCCTATTAGGAAGGGTATACAAATTTGAGGGCAGATCTAGATGTTCTCATGACTTATCCAAGCTCCAAACCTTGTCTTCCTAATCTTTTTGTCTCCTTCCAAAGTTCGTCCCAAAAAGCTTTGATGGTTTTGAACCACACACCATCCGATTTAAACATATGCTCACAGAGAATGTTGGAACAAAGCCGGTTTATATGTTATGGAAGCACCAATGGAAGCTGGAGTCCAGAAGGTCCAGTAGCTTAAACCTACAACAGAATGAGCGGGAAGTCCTAATAATCCTCAAAATTTATTGTTTTTAACCAAACTTTAGACACCATTGGCTTAGAATGGAAGGTCCTTTTATAACCCTTACTTGGGGAAGGGGATGCCTTCTCACCAAGTATCAACTTGCAAATTAGTTTAGGAAACACAAGCATGGACATTTAATGTAGGTTCACTCTCGAGCAACATTTTTTATTTGCATCATTCATTGGTTAATATACCATTTTGGTCCTTATACTCTAGGATTTACTTTTATTCCATTTTAATTCTGGTATTATACTTTCAAATATTCAAATATAATCCCTGGAATGACTACTTTCAATAAATTAGAAATATAGTCTCTACTGTTTATTTGAAGTAAATTTTGATCAAACTTGGTAAAATAATAATATTAATTTTCATTCAACAGACCATCTTTTTTCTTTATGAAGAGGTTAACACTAAGCTATTGTTAGGGATTAATTTTAAGATTTATTTGAACTTGGAACTGTATGGAATAAATTTAGACATTTGGATTTATGTGGGCTAAAATGGAATGAAACTTTAAGTTCATGGACCAAAATGATATTTTGACTTAGTTCATATTGCACATTAACAAAAAGGCTCCTTTCCAAAGGTAAGGTTTTTTATTTTCCCAAAATCCAGCTGCTTTAGTTTGGTGGTTGTATGTTTCAATCGTTTGATTTTTGTTCTGTGCCCCATTTTCTTAATCCTAAAATTCGCTTTGGTCGACTTATGGTGTACTTGGAATACATTCCCAAGTGATTAATTTAAAAAATAAGTCATTTTGGAAAAGATGTGAGTGTTAGGCAACCACTCAAAATAGCTTTTGAAGTATAGTTTACATAGATTTTATAAAGAAAGTTTAAATAAAAATGAAATTTTAAAAAAATATTTTGTCCACAAGTCAATCAAAATGAGCCTACAGGCCCTTAGTCAGTCATGTTTATTTCTTCTGTGGTAATAGTGAACCTTTTACTGTTGTTTATTAGTAATCTTTTACAATGAACAATAAGTTAAAAATTGTCCTTGTACCTTATTCCTGATGCTTGAATGGCACTGGCGGAAATTTTGATATATTGATTGTCGTTTTAGTTCTTTCTCTCTTTTTTTTTTCTGCAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTATGATTCTTACTATCTACATATTTTCATCATCGTTTAAATAAAGCAACTATGATCAAAGCTTTGGATACCATGAACTATCAATTTTTCTGAATAGTATTGTTGTCTAAGCATGCAGCTTTGGACTTCATTTTGACAATTGCAATTATCTATGCGCTAAACAGATCAAATGGTTTTAGGTAGCATGAAAATTTCAGAGCTTTTATTTATTGTTAAAGAAAAAAGTAGCTATCATGAGATTTTCCGACTGAAGACTTCCTCTAAGGACTGGATAAAGGCCTGTGTGTTCTGACCGAGCCTGTTTCTGTCATTTGAATAAATTGTATATACTTTTGCACTGTGCAAGTGCAATCGATTTTCTCTGCTGTCCATTGCACCATGTTAAACATGTTAAACTGACTTGAAAATTTTTTATGCTACTGCTCATTCATTTGAAACTTCTTGCGTGCTTCATACATTTTCTTACCGTCTTTTTTTCTCTTTTTATTGCTGTAATTTTAGGGGTTAGGCCATGGTTAACTATGTTTTGTGAAAGTTTGTTGAAAATTATAAATTATTCTACCACTCAGAAAAAGTGAAAGTTGGGCTCTTCTTGAGCGTTTTGTGCATGTGCAGAAGAAGTAAACAGGTGTTATTTAAGGCGTGCATTTTAGTTCATATAGATTCTTTTCTTGCGTATTATCTAGCAACCTCAGTATGATTAAAATTGGCATACTATTCATTTCACAGGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

mRNA sequence

ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

Coding sequence (CDS)

ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTGTAGAGTTTTTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCAGGCCTCTTGGCCTAATTGTGTGCAGGGGGACTGCTGTAATGCTGGTGTCTCCAGTTGATGGAACAGACGAGATTGCTAACCCTTTCATCCAACCCGATGGTGCATAG

Protein sequence

MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA*

Homology

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BLAST of CsaV3_3G032260 vs. NCBI nr
Match: XP_004149601.1 (sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 sm-like protein LSM7 [Cucumis sativus] >KGN58602.1 hypothetical protein Csa_001125 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

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BLAST of CsaV3_3G032260 vs. NCBI nr
Match: XP_038903588.1 (sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [Benincasa hispida] >KAA0048332.1 sm-like protein LSM7 [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

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BLAST of CsaV3_3G032260 vs. NCBI nr
Match: XP_011625467.1 (sm-like protein LSM7 [Amborella trichopoda] >XP_011625468.1 sm-like protein LSM7 [Amborella trichopoda] >XP_020526240.1 sm-like protein LSM7 [Amborella trichopoda])

HSP 1 Score: 199.1 bits (505), Expect = 1.8e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRPLGLIVCRGTAVMLVSP DGTDEI+NPF+QPDGA
Sbjct: 61  TDQTRPLGLIVCRGTAVMLVSPTDGTDEISNPFVQPDGA 99

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BLAST of CsaV3_3G032260 vs. NCBI nr
Match: KAF3452671.1 (hypothetical protein FNV43_RR03104 [Rhamnella rubrinervis])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRPLGLIVCRGTAVMLVSP DGTDEIANPF+QP+GA
Sbjct: 61  TDQTRPLGLIVCRGTAVMLVSPTDGTDEIANPFLQPEGA 99

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BLAST of CsaV3_3G032260 vs. NCBI nr
Match: XP_022152570.1 (sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

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BLAST of CsaV3_3G032260 vs. ExPASy Swiss-Prot
Match: Q9SI54 (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.5e-44
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

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BLAST of CsaV3_3G032260 vs. ExPASy Swiss-Prot
Match: Q9UK45 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-28
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 63
           +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 64  TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TR LGL+VCRGT+V+L+ P DG + I NPFIQ   A
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDA 103

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BLAST of CsaV3_3G032260 vs. ExPASy Swiss-Prot
Match: Q9CQQ8 (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-28
Identity = 53/92 (57.61%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 63
          +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ 
Sbjct: 8  KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 64 TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 96
          TR LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]

BLAST of CsaV3_3G032260 vs. ExPASy Swiss-Prot
Match: Q54HF6 (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX=44689 GN=lsm7 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 6.8e-26
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 63
          +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+
Sbjct: 8  KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 64 TRPLGLIVCRGTAVMLVSPVDGTDEIANPF 94
           R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

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BLAST of CsaV3_3G032260 vs. ExPASy Swiss-Prot
Match: O74499 (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm7 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-25
Identity = 51/94 (54.26%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQ 63
           RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P+D  K T  
Sbjct: 21  RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGA 80

Query: 64  TRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
            R LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 81  IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

[Close]

BLAST of CsaV3_3G032260 vs. ExPASy TrEMBL
Match: A0A0A0LD28 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697950 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of CsaV3_3G032260 vs. ExPASy TrEMBL
Match: A0A5A7TXR7 (Sm-like protein LSM7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00460 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of CsaV3_3G032260 vs. ExPASy TrEMBL
Match: A0A6J1DI46 (sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTR LGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA
Sbjct: 61  TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 99

[Close]

BLAST of CsaV3_3G032260 vs. ExPASy TrEMBL
Match: A0A1S3TGW6 (sm-like protein LSM7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755385 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRQLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]

BLAST of CsaV3_3G032260 vs. ExPASy TrEMBL
Match: A0A2P5D7Z2 (Sm-like protein Lsm7/snRNP-G OS=Parasponia andersonii OX=3476 GN=PanWU01x14_088270 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
           MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT
Sbjct: 1   MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60

Query: 61  TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDGA 100
           TDQTR LGLIVCRGTAVMLVSP DGTDEIANPFIQPDGA
Sbjct: 61  TDQTRSLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 99

[Close]

BLAST of CsaV3_3G032260 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-45
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of CsaV3_3G032260 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-45
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTR LGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of CsaV3_3G032260 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-10
Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGL 69
          DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]

BLAST of CsaV3_3G032260 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 60.5 bits (145), Expect = 9.1e-10
Identity = 28/75 (37.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGL 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            D    +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV---------NGDDKTDIGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]

BLAST of CsaV3_3G032260 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-08
Identity = 27/70 (38.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 15 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRG 74
          +DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +   D+T  +G++V RG
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGMVVIRG 60

Query: 75 TAVMLVSPVD 85
           +++ V  ++
Sbjct: 61 NSIVTVEALE 61

The following BLAST results are available for this feature:

BLAST of CsaV3_3G032260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149601.1	1.6e-48	100.00	sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 sm-like protein LSM7 [Cuc...	[more]
XP_038903588.1	2.1e-48	98.99	sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [B...	[more]
XP_011625467.1	1.8e-47	95.96	sm-like protein LSM7 [Amborella trichopoda] >XP_011625468.1 sm-like protein LSM7...	[more]
KAF3452671.1	2.3e-47	96.97	hypothetical protein FNV43_RR03104 [Rhamnella rubrinervis]	[more]
XP_022152570.1	2.3e-47	97.98	sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 ...	[more]

BLAST of CsaV3_3G032260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI54	1.5e-44	93.62	Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1	[more]
Q9UK45	1.1e-28	57.29	U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV...	[more]
Q9CQQ8	4.2e-28	57.61	U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 S...	[more]
Q54HF6	6.8e-26	57.78	Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX...	[more]
O74499	9.8e-25	54.26	U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of CsaV3_3G032260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD28	7.7e-49	100.00	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697950 PE=3 SV=...	[more]
A0A5A7TXR7	1.0e-48	98.99	Sm-like protein LSM7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264...	[more]
A0A6J1DI46	1.1e-47	97.98	sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1	[more]
A0A1S3TGW6	1.9e-47	97.98	sm-like protein LSM7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755385 PE=3 ...	[more]
A0A2P5D7Z2	1.9e-47	97.98	Sm-like protein Lsm7/snRNP-G OS=Parasponia andersonii OX=3476 GN=PanWU01x14_0882...	[more]

BLAST of CsaV3_3G032260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03870.2	1.0e-45	93.62	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.1	1.0e-45	93.62	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.1	4.1e-10	40.00	probable small nuclear ribonucleoprotein G	[more]
AT3G11500.1	9.1e-10	37.33	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.2	5.0e-08	38.57	probable small nuclear ribonucleoprotein G	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 9..82 e-value: 1.4E-23 score: 94.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 10..82 e-value: 1.1E-20 score: 73.1
None	No IPR available	PIRSF	PIRSF037188	Lsm7	coord: 1..98 e-value: 1.7E-44 score: 148.3
None	No IPR available	GENE3D	2.30.30.100		coord: 1..92 e-value: 1.0E-32 score: 114.2
None	No IPR available	PANTHER	PTHR10553:SF30	BNAA06G33630D PROTEIN	coord: 3..97
IPR044641	Sm-like protein Lsm7/SmG	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 3..97
IPR017132	Sm-like protein Lsm7	CDD	cd01729	LSm7	coord: 5..93 e-value: 2.51741E-58 score: 172.0
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 11..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G032260.1	CsaV3_3G032260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process