CsaV3_3G031440 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G031440
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 27143871 .. 27144446 (-)
RNA-Seq Expression	CsaV3_3G031440
Synteny	CsaV3_3G031440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACCAAAAATAAATGACAGCTTTAATTCTGAAATTGGCCTAAAAGAACGAGTGGGAGTTGATGGTGGAGGGATACAGGTAACTGACACCAACTTTGTTTCCATTTGTATTCGAACCTAATTGGAGAATCTTTTCTGTTCAAATTCATAAATTATGTTTTCTTTTTCTTTTTCCTTTTATTGAATAACAAAAGAAATACTCTTGAAAATTGATTACTAAACTTTGGAAAGTTTTGGTTTAATCCTCAATGTTTAAATTAAAGTTTGAGCTTTGGTAGACTTTTGTTGTTAAATACATGGACATGTTTTTTTAGTGAACAGATCGAGACACATACAGAAAGTAAATTTCTGTATTACAATTAGGAAAGAATTTGTTACGTTATGCAAAGCCCCACCTATAATTTGTACGTATGAGAGAGGCGCAAGAGTCAAATCACAAGCAGTAGAATCAAGGAAATTGTTGGAGAAGGAAGGTACGAATCAGGGTGATGATCAAGGCAAGGACCACGGAATACATAAAGGGGTTGTAAGTAGGAGGAGTTTGGCAGATGAAGTCAATGTGGAGATTTTGTAG

mRNA sequence

ATGTTACCAAAAATAAATGACAGCTTTAATTCTGAAATTGGCCTAAAAGAACGAGTGGGAGTTGATGGTGGAGGGATACAGAGAGGCGCAAGAGTCAAATCACAAGCAGTAGAATCAAGGAAATTGTTGGAGAAGGAAGGTACGAATCAGGGTGATGATCAAGGCAAGGACCACGGAATACATAAAGGGGTTGTAAGTAGGAGGAGTTTGGCAGATGAAGTCAATGTGGAGATTTTGTAG

Coding sequence (CDS)

ATGTTACCAAAAATAAATGACAGCTTTAATTCTGAAATTGGCCTAAAAGAACGAGTGGGAGTTGATGGTGGAGGGATACAGAGAGGCGCAAGAGTCAAATCACAAGCAGTAGAATCAAGGAAATTGTTGGAGAAGGAAGGTACGAATCAGGGTGATGATCAAGGCAAGGACCACGGAATACATAAAGGGGTTGTAAGTAGGAGGAGTTTGGCAGATGAAGTCAATGTGGAGATTTTGTAG

Protein sequence

MLPKINDSFNSEIGLKERVGVDGGGIQRGARVKSQAVESRKLLEKEGTNQGDDQGKDHGIHKGVVSRRSLADEVNVEIL*

Homology

[Close]

BLAST of CsaV3_3G031440 vs. NCBI nr
Match: KGN58516.1 (hypothetical protein Csa_002098 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MLPKINDSFNSEIGLKERVGVDGGGIQRGARVKSQAVESRKLLEKEGTNQGDDQGKDHGI 60
          MLPKINDSFNSEIGLKERVGVDGGGIQRGARVKSQAVESRKLLEKEGTNQGDDQGKDHGI
Sbjct: 1  MLPKINDSFNSEIGLKERVGVDGGGIQRGARVKSQAVESRKLLEKEGTNQGDDQGKDHGI 60

Query: 61 HKGVVSRRSLADEVNVEIL 80
          HKGVVSRRSLADEVNVEIL
Sbjct: 61 HKGVVSRRSLADEVNVEIL 79

[Close]

BLAST of CsaV3_3G031440 vs. ExPASy TrEMBL
Match: A0A0A0LEP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653970 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-35
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MLPKINDSFNSEIGLKERVGVDGGGIQRGARVKSQAVESRKLLEKEGTNQGDDQGKDHGI 60
          MLPKINDSFNSEIGLKERVGVDGGGIQRGARVKSQAVESRKLLEKEGTNQGDDQGKDHGI
Sbjct: 1  MLPKINDSFNSEIGLKERVGVDGGGIQRGARVKSQAVESRKLLEKEGTNQGDDQGKDHGI 60

Query: 61 HKGVVSRRSLADEVNVEIL 80
          HKGVVSRRSLADEVNVEIL
Sbjct: 61 HKGVVSRRSLADEVNVEIL 79

The following BLAST results are available for this feature:

BLAST of CsaV3_3G031440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58516.1	6.1e-35	100.00	hypothetical protein Csa_002098 [Cucumis sativus]	[more]

BLAST of CsaV3_3G031440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G031440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEP2	3.0e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653970 PE=4 SV=1	[more]

BLAST of CsaV3_3G031440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G031440.1	CsaV3_3G031440.1	mRNA