CsaV3_3G031360 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G031360
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	60S ribosomal protein L44
Location	chr3: 27071468 .. 27073464 (+)
RNA-Seq Expression	CsaV3_3G031360
Synteny	CsaV3_3G031360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTATCGCTTCTCTTTTCAATTCCTACTTTGCCACTAAATTAGGGTTTCTGGAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTACTTCTTCTTCCTTCTCCGTTTTTCTGGAATTTCAATCTCTCCTACTCCTTCTCTTGATTCCCTTTGTGTTCCACTTGCCTGATTTATTTCTCTATTTGTTTTATTTGGTTGCGTCAGTTAGTTCTGTGATGGAAGCTGGAGTTACGTGCCTTTTGTTTTTTCGTAGTATCACTTGATCTAGGACTGTGTTAGAAGCAAACTGGTTTATCTGTTGTACTCGAGCATAGTTTGGCTTAGTTAGCGAGGTGAGGACGTAAGTTCTTTGGGGCTAGTTGTAGCATAAGCCATCTAAATCATCTTGCAGCTTGTGGGTGATCATGTTGATTTGGAAGTATTTTTGTTGCATAGACTGTAAGAGAATGAATCAGGATTACTGATATTTGTAGCTGATGGAAACTGGGTCCTGGATTTAGGATATGCATGATTGCTGTATGGAGTGAAATCTGTAGTGTCACTGAACTCTTATTGTTTTTTTGGATAATAAACAGTTTCATTGATGTTTGAAATTATAAAAGGGGAACCCCGATAAGCGTAATTACAAAAGGCTTCTCCAATAAGAGTGGAAGGAGGAATAATTATAGTGATGGCACTGAACTTTGAACGCTTTAGTATTGAGTGGGATTGGGATGTTTCATCAAAAAATTGCTTAAAAGAAGAATTTTCACGAGGTAAACATTGCACGTGGAATGGATTATAAATTCTGGAGCTTCGGTTGTAGTAAGTCTGTGGAGAAATTTTAAACCATGGATTCAAAAGGCAGTGGTGGGATTGTAGTATCTGTGTGTTTTTGTCATTACAGCTTTGTATCGTTGTGGTTTAATATTTGCTTTGCTGATATGGTTATGGCAAACAGGTGAACGTTCCTAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAAGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAAACCAAGCCCGTGTTTCACAAGAAGGTTAGTTAATTTTCTCAAAATTCTTACTTTATCTTTCTCCGAGGTGCTATTTAGATTAGAACTGAATTGAAACTCTTGAATCTCACAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGGTTAGAATGCGAAGTATTTTGTTTTTTCTCCGTTTAAGACCTCTCTCAATTAAGTATCTTGATCATTTTGCGAAAAATCTTTCAAACATATAGAACCGTTCTCATACTATATAAGGTTGTTGGTTCAATTAGTGTTAATAATATTAATATGTTTCCTTCCCGTAAAGTAAATACCCATTGCTATATTAGTGAAGGAAGTTCATACTTGATACCTGGTTTTAAAGTCATGACCTTTGGGGTAGTATTGTTTTCTCCATTCCGGTACTTGAGTACAGTTTCGTAATGAGCATCGAATTGGTACATGGTGAGAAAATGATATTTGAAGTAATTATTTGCTCTTTAAGACAAATATGCAAATCCAAGTGAGAAGCCTAATTGTTAGATGTTATCTGGTGTGGATATTGTGCGGTTTCCTTATCATCATATGTCTTGATTGTCAATTGCAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAAGGGAAGGGAACTTCTCTTTTCTAGACCCTTTTATCAGTTTTTTATCTTTTGTCACAAAGATTATTTGTTTTTGGAGTTCTTGCAGAATTGCTTTGTTTTGTTCAGCAATTAGATCTACCTGTCGTAATGATACTTTTTAGCTGAAACTTTCTCATCTTAATTAATGAATTACCATAATTTTGATGCTCTTTGATTGATATATCGAGTCTTCTCATTAGTTTGTTTGCCCGGTC

mRNA sequence

ATGGTGAACGTTCCTAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAAGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAAACCAAGCCCGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAAGGGAAGGGAACTTCTCTTTTCTAG

Coding sequence (CDS)

ATGGTGAACGTTCCTAAGACCAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGGAAGCATACCTTGCACAAGGTTACACAATATAAGAAGGGAAAAGATAGTCTTGCTGCACAGGGAAAGCGTAGGTACGATCGCAAGCAATCAGGATATGGAGGTCAAACCAAGCCCGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTTCAGTGCCAAGGTTGCAAACACGTATCCCAGCACCCTATCAAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAAGGGAAGGGAACTTCTCTTTTCTAG

Protein sequence

MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF*

Homology

[Close]

BLAST of CsaV3_3G031360 vs. NCBI nr
Match: CAA3026450.1 (60S ribosomal L44 [Olea europaea subsp. europaea])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 71  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 130

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 131 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 175

[Close]

BLAST of CsaV3_3G031360 vs. NCBI nr
Match: MBA0842590.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 120 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 179

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 180 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 224

[Close]

BLAST of CsaV3_3G031360 vs. NCBI nr
Match: KAF5744793.1 (hypothetical protein HS088_TW07G00373 [Tripterygium wilfordii])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 63  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 122

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 123 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 167

[Close]

BLAST of CsaV3_3G031360 vs. NCBI nr
Match: MBA0750941.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 548 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 607

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 608 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 652

[Close]

BLAST of CsaV3_3G031360 vs. NCBI nr
Match: KJB79863.1 (hypothetical protein B456_013G070100 [Gossypium raimondii])

HSP 1 Score: 219.2 bits (557), Expect = 1.7e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 29  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 88

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 89  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 133

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 219.2 bits (557), Expect = 2.3e-56
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 207.2 bits (526), Expect = 9.0e-53
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 4.9e-43
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG ++
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-43
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.4e-43
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSL 105
           KAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G ++
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy TrEMBL
Match: A0A059AD57 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy TrEMBL
Match: A0A1U8KM57 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=LOC107918511 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy TrEMBL
Match: A0A5D2E9A1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A03G203000v1 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy TrEMBL
Match: A0A0B0MJ69 (60S ribosomal L44 OS=Gossypium arboreum OX=29729 GN=LOC108459374 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. ExPASy TrEMBL
Match: A0A5J5SG84 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A04G130000v1 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.5e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 207.2 bits (526), Expect = 6.4e-54
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 207.2 bits (526), Expect = 6.4e-54
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 106
           KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGTSLF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of CsaV3_3G031360 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 182.2 bits (461), Expect = 2.2e-46
Identity = 86/93 (92.47%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEI 94
          KAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEI
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:

BLAST of CsaV3_3G031360 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA3026450.1	1.7e-53	100.00	60S ribosomal L44 [Olea europaea subsp. europaea]	[more]
MBA0842590.1	1.7e-53	100.00	hypothetical protein [Gossypium armourianum]	[more]
KAF5744793.1	1.7e-53	100.00	hypothetical protein HS088_TW07G00373 [Tripterygium wilfordii]	[more]
MBA0750941.1	1.7e-53	100.00	hypothetical protein [Gossypium gossypioides]	[more]
KJB79863.1	1.7e-53	100.00	hypothetical protein B456_013G070100 [Gossypium raimondii]	[more]

BLAST of CsaV3_3G031360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96499	2.3e-56	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3	[more]
O23290	9.0e-53	93.33	60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3	[more]
O59870	4.9e-43	77.88	60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3	[more]
P0CQ51	8.4e-43	77.88	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]
P0CQ50	8.4e-43	77.88	60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ...	[more]

BLAST of CsaV3_3G031360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A059AD57	8.5e-54	100.00	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV...	[more]
A0A1U8KM57	8.5e-54	100.00	60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=LOC107918511 PE=3 SV=...	[more]
A0A5D2E9A1	8.5e-54	100.00	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A03G203000v1 PE=...	[more]
A0A0B0MJ69	8.5e-54	100.00	60S ribosomal L44 OS=Gossypium arboreum OX=29729 GN=LOC108459374 PE=3 SV=1	[more]
A0A5J5SG84	8.5e-54	100.00	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A04G130000v1 PE...	[more]

BLAST of CsaV3_3G031360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23390.1	6.4e-54	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.1	6.4e-54	93.33	Zinc-binding ribosomal protein family protein	[more]
AT4G14320.2	2.2e-46	92.47	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.80		coord: 1..105 e-value: 1.0E-51 score: 175.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..57
None	No IPR available	PANTHER	PTHR10369:SF38	60S RIBOSOMAL PROTEIN L44-LIKE	coord: 2..105
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 19..93 e-value: 7.4E-35 score: 119.3
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 2..105
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 63..74
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G031360.1	CsaV3_3G031360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome