CsaV3_3G031080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G031080
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 26866446 .. 26866683 (+)
RNA-Seq ExpressionCsaV3_3G031080
SyntenyCsaV3_3G031080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTCTTCATGCTGCTGAAGTTGCTGCAGCATATTCCACTTCAGAAGACGACAAAGCAACTCTTACTTGTTTCTTCGAGCTCCAAGTGACAACTCCTAACTCGAGTGTGAATACATTTGCTGAAACACTCTGCCTATCATCCAATGAGCTCGCCCAATCGCTGTCCGTGAACCCGCATAGCTTGAAATTGGAAAATTTAGAGTACAAAATGCCATACTACATTGCTCCAACAGTGTAA

mRNA sequence

ATTCTTCATGCTGCTGAAGTTGCTGCAGCATATTCCACTTCAGAAGACGACAAAGCAACTCTTACTTGTTTCTTCGAGCTCCAAGTGACAACTCCTAACTCGAGTGTGAATACATTTGCTGAAACACTCTGCCTATCATCCAATGAGCTCGCCCAATCGCTGTCCGTGAACCCGCATAGCTTGAAATTGGAAAATTTAGAGTACAAAATGCCATACTACATTGCTCCAACAGTGTA

Coding sequence (CDS)

ATTCTTCATGCTGCTGAAGTTGCTGCAGCATATTCCACTTCAGAAGACGACAAAGCAACTCTTACTTGTTTCTTCGAGCTCCAAGTGACAACTCCTAACTCGAGTGTGAATACATTTGCTGAAACACTCTGCCTATCATCCAATGAGCTCGCCCAATCGCTGTCCGTGAACCCGCATAGCTTGAAATTGGAAAATTTAGAGTACAAAATGCCATACTACATTGCTCCAACAGTGTA

Protein sequence

ILHAAEVAAAYSTSEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHSLKLENLEYKMPYYIAPTVX
Homology
BLAST of CsaV3_3G031080 vs. NCBI nr
Match: KAE8650892.1 (hypothetical protein Csa_023516, partial [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 1.5e-33
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  ILHAAEVAAAYSTSEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHS 60
          ILHAAEVAAAYSTSEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHS
Sbjct: 1  ILHAAEVAAAYSTSEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHS 60

Query: 61 LKLENLEYKMPYYIAPTV 79
          LKLENLEYKMPYYIAPTV
Sbjct: 61 LKLENLEYKMPYYIAPTV 78

BLAST of CsaV3_3G031080 vs. NCBI nr
Match: KJB12742.1 (hypothetical protein B456_002G0343001, partial [Gossypium raimondii])

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-09
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 14 SEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHSLKLENLEYKMPYY 73
          SE D A + CF ELQV TP   V T  +TL LSS ELAQSL VNPH+LK E  EY+MPY 
Sbjct: 1  SEVDNAVVACFLELQVITPEPRVKTNVDTLLLSSRELAQSLFVNPHNLKSEVFEYQMPYS 60

Query: 74 IAPTV 79
            P +
Sbjct: 61 KVPAM 65

BLAST of CsaV3_3G031080 vs. NCBI nr
Match: GFA66678.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 4  AAEVAAAYSTSEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHSLKL 63
          A EV AAYS S+D+KA ++CFFELQVTT    ++   E L   S + AQSL V P +LK 
Sbjct: 24 AIEVTAAYSASDDEKANVSCFFELQVTTQEPRLSILPEVLLRVSKQPAQSLYVKPINLKS 83

Query: 64 ENLEYKMPYYIAPTV 79
            L Y++P    P +
Sbjct: 84 GTLVYQIPKIFVPAI 98

BLAST of CsaV3_3G031080 vs. ExPASy TrEMBL
Match: A0A0D2M680 (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_002G0343001 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.8e-09
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 14 SEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHSLKLENLEYKMPYY 73
          SE D A + CF ELQV TP   V T  +TL LSS ELAQSL VNPH+LK E  EY+MPY 
Sbjct: 1  SEVDNAVVACFLELQVITPEPRVKTNVDTLLLSSRELAQSLFVNPHNLKSEVFEYQMPYS 60

Query: 74 IAPTV 79
            P +
Sbjct: 61 KVPAM 65

BLAST of CsaV3_3G031080 vs. ExPASy TrEMBL
Match: A0A7C8Z9U4 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.5e-07
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 11 YSTSEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHSLKLENLEYKM 70
          YS S+D++AT +CFFELQ   P     T  E L LSS + AQSLS  P++LK E LEY++
Sbjct: 2  YSASDDERATTSCFFELQEIAPEPMQKTCPEVLFLSSTQPAQSLSQYPNNLKSELLEYQI 61

Query: 71 PYYIAPTV 79
          P  + P +
Sbjct: 62 PKSVVPAI 69

BLAST of CsaV3_3G031080 vs. ExPASy TrEMBL
Match: A0A699K181 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_638650 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.5e-07
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0

Query: 4  AAEVAAAYSTSEDDKATLTCFFELQVTTPNSSVNTFAETLCLSSNELAQSLSVNPHSLKL 63
          A EV AAYS S+D+KA ++CFFELQVTT    ++   E L   S + AQSL V P +LK 
Sbjct: 24 AIEVTAAYSASDDEKANVSCFFELQVTTQEPRLSILPEVLLRVSKQPAQSLYVKPINLKS 83

Query: 64 ENLEYKMPYYIAPTV 79
            L Y++P    P +
Sbjct: 84 GTLVYQIPKIFVPAI 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650892.11.5e-33100.00hypothetical protein Csa_023516, partial [Cucumis sativus][more]
KJB12742.15.7e-0958.46hypothetical protein B456_002G0343001, partial [Gossypium raimondii][more]
GFA66678.11.6e-0646.67hypothetical protein [Tanacetum cinerariifolium][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0D2M6802.8e-0958.46Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=B456_002G0... [more]
A0A7C8Z9U47.5e-0748.53Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A699K1817.5e-0746.67Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_638650 PE=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G031080.1CsaV3_3G031080.1mRNA