CsaV3_3G030090 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G030090
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 25843443 .. 25843619 (+)
RNA-Seq Expression	CsaV3_3G030090
Synteny	CsaV3_3G030090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAATGTAATGTCAGACAAAGGAAGCATGGTCTCTGGGCAACAAGGGGTCGCCGCAGACAGCTTGTACAAGGAGGGTGCTCAATTGAGCTTCTTGCTTCCGACACAACTTGAATGGAGAAGAGTAGGCCAGCACGGACGAGCGGAGAAGAGGAGACTAACACAGACGAGCTAA

mRNA sequence

ATGGACAATGTAATGTCAGACAAAGGAAGCATGGTCTCTGGGCAACAAGGGGTCGCCGCAGACAGCTTGTACAAGGAGGGTGCTCAATTGAGCTTCTTGCTTCCGACACAACTTGAATGGAGAAGAGTAGGCCAGCACGGACGAGCGGAGAAGAGGAGACTAACACAGACGAGCTAA

Coding sequence (CDS)

ATGGACAATGTAATGTCAGACAAAGGAAGCATGGTCTCTGGGCAACAAGGGGTCGCCGCAGACAGCTTGTACAAGGAGGGTGCTCAATTGAGCTTCTTGCTTCCGACACAACTTGAATGGAGAAGAGTAGGCCAGCACGGACGAGCGGAGAAGAGGAGACTAACACAGACGAGCTAA

Protein sequence

MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS*

Homology

[Close]

BLAST of CsaV3_3G030090 vs. NCBI nr
Match: KAE8650859.1 (hypothetical protein Csa_000786 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 5.2e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS 59
          MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS
Sbjct: 1  MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS 58

[Close]

BLAST of CsaV3_3G030090 vs. ExPASy TrEMBL
Match: A0A0A0LE52 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G633790 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS 59
          MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS
Sbjct: 6  MDNVMSDKGSMVSGQQGVAADSLYKEGAQLSFLLPTQLEWRRVGQHGRAEKRRLTQTS 63

The following BLAST results are available for this feature:

BLAST of CsaV3_3G030090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650859.1	5.2e-23	100.00	hypothetical protein Csa_000786 [Cucumis sativus]	[more]

BLAST of CsaV3_3G030090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G030090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE52	2.5e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G633790 PE=4 SV=1	[more]

BLAST of CsaV3_3G030090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G030090.1	CsaV3_3G030090.1	mRNA