CsaV3_3G028110 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G028110
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ULP_PROTEASE domain-containing protein
Location	chr3: 24543776 .. 24545015 (-)
RNA-Seq Expression	CsaV3_3G028110
Synteny	CsaV3_3G028110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGAAGAGTATAAAGGGTGTAGATATGGTTCGTATCCCAATGAACGAGCTAATATTCGGTAAAAACAAATTCATTTATTTAGATCGTGAGGACTTGATCCACTATTGCAGCTAGTAGAAATAGGCTATATGTGCATCCTAGCATACATTACGTAAGTAAACATCTTTTACTCATCTTTATGTCCAATACTATAGCTATAGTTATTTTGTTCCTTTTTAACTAAGATTGTTGTTACTTAGATATCTTTGGGATGAATGTGATTGTGGAAACAAGTTTTTTGTTATCAACCAAGCAAAAATAACATCACATATCAAGGATCGTGATCTCCGATCCAGAAATTTTGCCAACCAGTTAGAAGCGACTACCTTGGAACAAATAGTTCTAATTCCGTATAATACTGGGTAAATAAATAAGAGGAACACATTATTATGTTTTTCATTGAGCTTAAATGTATACTCACATTGAAGATGTTTATTGTAGTTTTCATTGGATGTTGCATGTCATCGATCTTCGAGGGAACTGTGTTTATGTTTTGGACTCTCTTCGAAGTAAAGTTAACGAAGACATCCATGGAGTCATAAATGTGTAAGTGTACTTACGATTTACTTCTTATTTCACTTCATTGTCTTCCAATTCTAATTATGTTTCCAAATGTATAGAGGATTAAAAGCATGGCAAGCTAAGCATGATTTACAACATTATCGGTCAACTCCGAAATGGAAACCTATAAAGATAATTTGCATTGACACAAAATTATTTTCAATGAAACATAAGAATAATTTGTATGTAATTTATATACATGCAATGTCCTCGTCAATTAGAATCGGTTGGGTGTGGGTATTATGTCCAAAAGTATACATCAAATCGTTTATAATTCTAGTACTCCCATCACTAGTCTTGTAAGTTTCTACATTCACTTTTTTATATGTTACAAATAAATAAATTACCTAAACTTATTATTTCCATACATTCCTTGTATATAGGCAAGAGGAGATTGACGAGATTCACACAAAATGGGCAAGCTTTGTTAGTCGATTTGGGTAAGCTTTATATATGTGTTGTATTGTAGTGTTTTAGGTGTTACTTTATAGTGTATTTGTTGTAGTACTATGTGAAAAATGTGTGTTAGTGGAGGAATTTGTTGTACACATACTTTAATACTTTACATATTATTTACTTGATTGATATGTGTATTTCTGTAGTAGTATGAAAGTGTGGAAAAGTGTATTTCTGTAGTTT

mRNA sequence

ATGTGCATCCTAGCATACATTACATATCTTTGGGATGAATGTGATTGTGGAAACAAGTTTTTTGTTATCAACCAAGCAAAAATAACATCACATATCAAGGATCGTGATCTCCGATCCAGAAATTTTGCCAACCAGTTAGAAGCGACTACCTTGGAACAAATAGTTCTAATTCCGTATAATACTGGTTTTCATTGGATGTTGCATGTCATCGATCTTCGAGGGAACTGTGTTTATGTTTTGGACTCTCTTCGAAGTAAAGTTAACGAAGACATCCATGGAGTCATAAATGTGCAAGAGGAGATTGACGAGATTCACACAAAATGGGCAAGCTTTGTTAGTCGATTTGGGTAA

Coding sequence (CDS)

ATGTGCATCCTAGCATACATTACATATCTTTGGGATGAATGTGATTGTGGAAACAAGTTTTTTGTTATCAACCAAGCAAAAATAACATCACATATCAAGGATCGTGATCTCCGATCCAGAAATTTTGCCAACCAGTTAGAAGCGACTACCTTGGAACAAATAGTTCTAATTCCGTATAATACTGGTTTTCATTGGATGTTGCATGTCATCGATCTTCGAGGGAACTGTGTTTATGTTTTGGACTCTCTTCGAAGTAAAGTTAACGAAGACATCCATGGAGTCATAAATGTGCAAGAGGAGATTGACGAGATTCACACAAAATGGGCAAGCTTTGTTAGTCGATTTGGGTAA

Protein sequence

MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYNTGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINVQEEIDEIHTKWASFVSRFG*

Homology

[Close]

BLAST of CsaV3_3G028110 vs. NCBI nr
Match: KAE8650819.1 (hypothetical protein Csa_017443 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.0e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN
Sbjct: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINVQEEIDEIHTKWASFVSRFG 117
           TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINVQEEIDEIHTKWASFVSRFG
Sbjct: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINVQEEIDEIHTKWASFVSRFG 116

[Close]

BLAST of CsaV3_3G028110 vs. NCBI nr
Match: KAA0050643.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 102/179 (56.98%), Postives = 106/179 (59.22%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCILAYITYLWDECDC   FFVI+Q+KI+SHIKDRDLRSRN ANQLEA  LEQ VLIPYN
Sbjct: 630 MCILAYITYLWDECDCARNFFVIDQSKISSHIKDRDLRSRNLANQLEAVNLEQKVLIPYN 689

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWMLHVIDLR NCVYVLDSLRSKVNEDIHGVINV                       
Sbjct: 690 TGFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKTWQAKHDLQRYRSTPKWRPV 749

[Close]

BLAST of CsaV3_3G028110 vs. NCBI nr
Match: KAA0067182.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 4.8e-44
Identity = 97/162 (59.88%), Postives = 105/162 (64.81%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCILAYIT LWD+CDC   FFVI+Q+KI+SHIKDRDLRS+N ANQLEA  LEQ VLIPYN
Sbjct: 645 MCILAYITCLWDKCDCAKNFFVIDQSKISSHIKDRDLRSKNLANQLEAVNLEQKVLIPYN 704

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWMLHVIDLR NCVYVLDSLRSKVNEDIHG+INV                       
Sbjct: 705 TGFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVVEDMASETRSTTLSINSKMKTCK 764

[Close]

BLAST of CsaV3_3G028110 vs. NCBI nr
Match: KAA0059922.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 98/165 (59.39%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCILAYIT LWD+CDC   FFVI+Q+KI+SHIKDRDLRSRN ANQLEA  LEQ VLIPYN
Sbjct: 343 MCILAYITCLWDKCDCARNFFVIDQSKISSHIKDRDLRSRNLANQLEAVNLEQKVLIPYN 402

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWMLHVIDLR NCVYVLDSLRSKVNEDIHGVINV                       
Sbjct: 403 TGFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVVEDMASETRSTTRSINSKMETCK 462

[Close]

BLAST of CsaV3_3G028110 vs. NCBI nr
Match: KAA0059274.1 (uncharacterized protein E6C27_scaffold430G002130 [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.4e-43
Identity = 98/162 (60.49%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCIL YITYLWDE DC   FFVI+Q+KI+SHIKDRDLR RN ANQLEA  LEQ VLIPYN
Sbjct: 405 MCILVYITYLWDEYDCARNFFVIDQSKISSHIKDRDLRPRNLANQLEAVNLEQKVLIPYN 464

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWML+VIDLR NCVYVLDSLRSKVNEDIHGVINV                       
Sbjct: 465 TGFHWMLNVIDLRENCVYVLDSLRSKVNEDIHGVINVVEDMTSETRSITLSINSKMETCK 524

[Close]

BLAST of CsaV3_3G028110 vs. ExPASy TrEMBL
Match: A0A5A7U441 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001120 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.9e-45
Identity = 102/179 (56.98%), Postives = 106/179 (59.22%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCILAYITYLWDECDC   FFVI+Q+KI+SHIKDRDLRSRN ANQLEA  LEQ VLIPYN
Sbjct: 630 MCILAYITYLWDECDCARNFFVIDQSKISSHIKDRDLRSRNLANQLEAVNLEQKVLIPYN 689

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWMLHVIDLR NCVYVLDSLRSKVNEDIHGVINV                       
Sbjct: 690 TGFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVGLKTWQAKHDLQRYRSTPKWRPV 749

[Close]

BLAST of CsaV3_3G028110 vs. ExPASy TrEMBL
Match: A0A5A7VFM4 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002650 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 97/162 (59.88%), Postives = 105/162 (64.81%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCILAYIT LWD+CDC   FFVI+Q+KI+SHIKDRDLRS+N ANQLEA  LEQ VLIPYN
Sbjct: 645 MCILAYITCLWDKCDCAKNFFVIDQSKISSHIKDRDLRSKNLANQLEAVNLEQKVLIPYN 704

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWMLHVIDLR NCVYVLDSLRSKVNEDIHG+INV                       
Sbjct: 705 TGFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGIINVVEDMASETRSTTLSINSKMKTCK 764

[Close]

BLAST of CsaV3_3G028110 vs. ExPASy TrEMBL
Match: A0A5A7UVK8 (40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G002270 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.1e-44
Identity = 98/165 (59.39%), Postives = 104/165 (63.03%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCILAYIT LWD+CDC   FFVI+Q+KI+SHIKDRDLRSRN ANQLEA  LEQ VLIPYN
Sbjct: 343 MCILAYITCLWDKCDCARNFFVIDQSKISSHIKDRDLRSRNLANQLEAVNLEQKVLIPYN 402

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWMLHVIDLR NCVYVLDSLRSKVNEDIHGVINV                       
Sbjct: 403 TGFHWMLHVIDLRENCVYVLDSLRSKVNEDIHGVINVVEDMASETRSTTRSINSKMETCK 462

[Close]

BLAST of CsaV3_3G028110 vs. ExPASy TrEMBL
Match: A0A5A7UW21 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G002130 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 98/162 (60.49%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCIL YITYLWDE DC   FFVI+Q+KI+SHIKDRDLR RN ANQLEA  LEQ VLIPYN
Sbjct: 405 MCILVYITYLWDEYDCARNFFVIDQSKISSHIKDRDLRPRNLANQLEAVNLEQKVLIPYN 464

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWML+VIDLR NCVYVLDSLRSKVNEDIHGVINV                       
Sbjct: 465 TGFHWMLNVIDLRENCVYVLDSLRSKVNEDIHGVINVVEDMTSETRSITLSINSKMETCK 524

[Close]

BLAST of CsaV3_3G028110 vs. ExPASy TrEMBL
Match: A0A5A7UNG9 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00170 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.5e-43
Identity = 99/178 (55.62%), Postives = 105/178 (58.99%), Query Frame = 0


Query: 1   MCILAYITYLWDECDCGNKFFVINQAKITSHIKDRDLRSRNFANQLEATTLEQIVLIPYN 60
           MCILAYIT LWD+CDC   FFVI+Q+KI+SHIKDRDLRSRN ANQLEA  LEQ VLIPYN
Sbjct: 193 MCILAYITCLWDKCDCARNFFVIDQSKISSHIKDRDLRSRNLANQLEAVNLEQKVLIPYN 252

Query: 61  TGFHWMLHVIDLRGNCVYVLDSLRSKVNEDIHGVINV----------------------- 116
           TGFHWMLHVIDLR NCVYVLDSLRSKVNEDIHG+INV                       
Sbjct: 253 TGFHWMLHVIDLRKNCVYVLDSLRSKVNEDIHGIINVVEDMASETQSTTLSINSKMETCK 312

The following BLAST results are available for this feature:

BLAST of CsaV3_3G028110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650819.1	3.0e-62	100.00	hypothetical protein Csa_017443 [Cucumis sativus]	[more]
KAA0050643.1	1.6e-44	56.98	transposase [Cucumis melo var. makuwa]	[more]
KAA0067182.1	4.8e-44	59.88	transposase [Cucumis melo var. makuwa]	[more]
KAA0059922.1	1.1e-43	59.39	40S ribosomal protein S13-like [Cucumis melo var. makuwa]	[more]
KAA0059274.1	2.4e-43	60.49	uncharacterized protein E6C27_scaffold430G002130 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_3G028110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G028110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U441	7.9e-45	56.98	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001120 P...	[more]
A0A5A7VFM4	2.3e-44	59.88	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002650 PE...	[more]
A0A5A7UVK8	5.1e-44	59.39	40S ribosomal protein S13-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7UW21	1.1e-43	60.49	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7UNG9	2.5e-43	55.62	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of CsaV3_3G028110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 39..91 e-value: 1.2E-6 score: 28.6
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 1..113 e-value: 2.5E-11 score: 45.4
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 5..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G028110.1	CsaV3_3G028110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity