CsaV3_3G027960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G027960
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr3: 24419153 .. 24421809 (+)
RNA-Seq ExpressionCsaV3_3G027960
SyntenyCsaV3_3G027960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGTCTGCCTCTTCCCACTACCCTCAAAATTCCGTTCCCTTCTTCAAACCCATCATCTTCTCTCCAATTCCCCACATTCACAAACCCTAATCCCCTCACCGGTCGTTTGATTCAAGAAATCAATAATGGCCGCCTTCACAAAGCAATCTCAACTCTCGAACACATGGTCCACCAAGGATCTCACCCTGATCTTCAAACTTACTCCCTTTTCCTCAAAAAATGTATTAGAACTCGCAGTTTTGATATTGGTACACTGGTTCATGAAAAACTCACTCAATCGGATCTCCAACTCGACTCTGTCACTCTTAATTCCTTGATTAGCTTGTACTCCAAGTGCGGGCAATGGGAGAAAGCAACTTCCATCTTTCAGCTCATGGGAAGTAGTAGGGATTTGATTTCTTGGAGTGCTATGGTGTCCTGCTTTGCCAATAACAATATGGGGTTTCGTGCGCTTCTTACGTTTGTTGATATGATTGAAAATGGTTATTACCCAAATGAGTATTGCTTTGCCGCTGCAACTCGTGCGTGTTCGACTGCTGAATTTGTGTCGGTGGGTGATTCTATTTTTGGATTTGTTGTTAAAACTGGGTATCTTCAATCGGATGTATGTGTTGGGTGTGGTCTGATTGATATGTTTGTGAAGGGACGTGGGGATTTGGTTTCTGCATTTAAAGTGTTTGAGAAAATGCCTGAAAGAAATGCAGTTACTTGGACATTGATGATTACTAGGTTGATGCAATTTGGGTATGCTGGGGAAGCTATTGATTTGTTTTTGGAAATGATATTAAGTGGATATGAACCTGATAGATTCACATTAAGTGGTGTAATATCCGCTTGTGCAAATATGGAATTGTTATTGCTAGGGCAGCAGTTGCATTCTCAAGCAATAAGACACGGGTTGACTCTGGATCGATGTGTGGGTTGTTGTCTAATAAATATGTATGCTAAATGCTCTGTGGATGGATCAATGTGTGCAGCAAGGAAGATTTTTGATCAGATTCTGGATCATAATGTCTTCTCTTGGACTGCAATGATCACAGGATATGTTCAAAAAGGGGGATATGATGAAGAAGCTCTCGATCTTTTTCGTGGAATGATCTTGACCCATGTTATACCAAACCATTTTACGTTTTCCAGCACTTTGAAGGCCTGTGCAAATCTAGCTGCTCTACGGATTGGAGAACAGGTTTTTACTCATGCAGTAAAGCTCGGTTTTTCATCAGTTAATTGTGTTGCAAACTCACTTATTAGCATGTATGCACGATCTGGCAGAATTGATGATGCACGGAAAGCATTTGATATTCTGTTTGAGAAGAATTTGATTTCTTATAACACGGTAATTGATGCATATGCTAAGAACTTAAATTCTGAGGAAGCTTTAGAACTTTTCAATGAGATTGAGGATCAAGGGATGGGGGCCAGTGCTTTTACGTTCGCTAGCCTTCTGAGTGGAGCTGCCAGCATCGGTACAATAGGCAAGGGCGAGCAAATTCATGCTCGGGTGATAAAGTCAGGGTTGAAATTGAATCAGTCTGTGTGCAATGCTTTAATCTCCATGTATTCTAGGTGTGGAAATATTGAATCTGCTTTCCAAGTTTTTGAAGACATGGAAGACAGAAATGTCATCTCTTGGACTTCAATTATCACAGGTTTTGCAAAACATGGGTTCGCAACACAAGCCTTGGAACTGTTCCACAAGATGCTCGAGGAAGGTGTTAGACCAAATTTGGTTACCTACATTGCTGTTTTATCAGCTTGTAGCCACGTTGGTCTTGTTAACGAGGGTTGGAAACACTTCAAATCAATGTATACAGAGCATGGAGTCATTCCGAGGATGGAACATTATGCCTGTATGGTTGACATACTAGGTCGTTCAGGATCTCTCTCTGAAGCCATTCAGTTTATTAATTCAATGCCTTACAAAGCTGATGCACTCGTATGGCGAACATTTCTTGGAGCCTGCCGAGTCCACGGTAACCTAGAACTAGGGAAACATGCTGCCAAAATGATTATCGAACAAGAGCCACATGATCCTGCTGCATACATCTTGCTATCAAATTTGTATGCATCCACCTCAAAATGGGATGAAGTTTCAAACATCAGAAAGGCGATGAAAGAAAAAAACTTGATCAAAGAAGCAGGTTGTAGCTGGGTAGAGGTTGAAAATAAAGTGCATAAGTTTTATGTTGGTGATACTTCACACCCAAAAGCTGCGGAAATATACGATGAACTTCAAAACTTGTCTGTAAAAATTAAGAAACTAGGATATGTCCCAAATTTGGATTTTGTGCTTCATGATGTGGAGGAAGAACAAAAGGAGAAACTTTTGTTTCAGCATAGTGAGAAAATAGCAGTGGCGTTTGGTCTCATCAGCACATCCAAGATGAAACCTATCAGAGTTTTCAAAAACCTACGAATTTGTGGGGATTGTCACTCCGCAATCAAATATATTTCAATGGCCACAGGCAGAGAGATCATTGTTAGAGATGCAAACCGGTTTCATCATATTAAAGATGGAAGATGCTCCTGCAATGAGTATTGGTGATGATGTTTTAAACTTAAAACTGGAGCAGGTATGTCTTCTTCATCCCTAACTTTGATGTTGAAAATGTGTTACCAATAATGATTCTCAACCGGATTTTTATTTTTTAA

mRNA sequence

ATGCAGAGTCTGCCTCTTCCCACTACCCTCAAAATTCCGTTCCCTTCTTCAAACCCATCATCTTCTCTCCAATTCCCCACATTCACAAACCCTAATCCCCTCACCGGTCGTTTGATTCAAGAAATCAATAATGGCCGCCTTCACAAAGCAATCTCAACTCTCGAACACATGGTCCACCAAGGATCTCACCCTGATCTTCAAACTTACTCCCTTTTCCTCAAAAAATGTATTAGAACTCGCAGTTTTGATATTGGTACACTGGTTCATGAAAAACTCACTCAATCGGATCTCCAACTCGACTCTGTCACTCTTAATTCCTTGATTAGCTTGTACTCCAAGTGCGGGCAATGGGAGAAAGCAACTTCCATCTTTCAGCTCATGGGAAGTAGTAGGGATTTGATTTCTTGGAGTGCTATGGTGTCCTGCTTTGCCAATAACAATATGGGGTTTCGTGCGCTTCTTACGTTTGTTGATATGATTGAAAATGGTTATTACCCAAATGAGTATTGCTTTGCCGCTGCAACTCGTGCGTGTTCGACTGCTGAATTTGTGTCGGTGGGTGATTCTATTTTTGGATTTGTTGTTAAAACTGGGTATCTTCAATCGGATGTATGTGTTGGGTGTGGTCTGATTGATATGTTTGTGAAGGGACGTGGGGATTTGGTTTCTGCATTTAAAGTGTTTGAGAAAATGCCTGAAAGAAATGCAGTTACTTGGACATTGATGATTACTAGGTTGATGCAATTTGGGTATGTCTTCTTCATCCCTAACTTTGATGTTGAAAATGTGTTACCAATAATGATTCTCAACCGGATTTTTATTTTTTAA

Coding sequence (CDS)

ATGCAGAGTCTGCCTCTTCCCACTACCCTCAAAATTCCGTTCCCTTCTTCAAACCCATCATCTTCTCTCCAATTCCCCACATTCACAAACCCTAATCCCCTCACCGGTCGTTTGATTCAAGAAATCAATAATGGCCGCCTTCACAAAGCAATCTCAACTCTCGAACACATGGTCCACCAAGGATCTCACCCTGATCTTCAAACTTACTCCCTTTTCCTCAAAAAATGTATTAGAACTCGCAGTTTTGATATTGGTACACTGGTTCATGAAAAACTCACTCAATCGGATCTCCAACTCGACTCTGTCACTCTTAATTCCTTGATTAGCTTGTACTCCAAGTGCGGGCAATGGGAGAAAGCAACTTCCATCTTTCAGCTCATGGGAAGTAGTAGGGATTTGATTTCTTGGAGTGCTATGGTGTCCTGCTTTGCCAATAACAATATGGGGTTTCGTGCGCTTCTTACGTTTGTTGATATGATTGAAAATGGTTATTACCCAAATGAGTATTGCTTTGCCGCTGCAACTCGTGCGTGTTCGACTGCTGAATTTGTGTCGGTGGGTGATTCTATTTTTGGATTTGTTGTTAAAACTGGGTATCTTCAATCGGATGTATGTGTTGGGTGTGGTCTGATTGATATGTTTGTGAAGGGACGTGGGGATTTGGTTTCTGCATTTAAAGTGTTTGAGAAAATGCCTGAAAGAAATGCAGTTACTTGGACATTGATGATTACTAGGTTGATGCAATTTGGGTATGTCTTCTTCATCCCTAACTTTGATGTTGAAAATGTGTTACCAATAATGATTCTCAACCGGATTTTTATTTTTTAA

Protein sequence

MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYVFFIPNFDVENVLPIMILNRIFIF*
Homology
BLAST of CsaV3_3G027960 vs. NCBI nr
Match: KAE8650806.1 (hypothetical protein Csa_017457 [Cucumis sativus])

HSP 1 Score: 552.4 bits (1422), Expect = 2.3e-153
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST
Sbjct: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGYVFFIPNFDVENVLPIMILNRIFIF 276
           LMITRLMQFGYVFFIPNFDVENVLPIMILNRIFIF
Sbjct: 241 LMITRLMQFGYVFFIPNFDVENVLPIMILNRIFIF 275

BLAST of CsaV3_3G027960 vs. NCBI nr
Match: XP_004151259.1 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Cucumis sativus])

HSP 1 Score: 507.3 bits (1305), Expect = 8.4e-140
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST
Sbjct: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITRLMQFGY
Sbjct: 241 LMITRLMQFGY 251

BLAST of CsaV3_3G027960 vs. NCBI nr
Match: TYK03154.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 488.8 bits (1257), Expect = 3.1e-134
Identity = 240/250 (96.00%), Postives = 246/250 (98.40%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPS NPSSSLQFP+FTNPNPLT RLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSPNPSSSLQFPSFTNPNPLTDRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFD+GTLVHEKLTQS+LQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDLGTLVHEKLTQSNLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQ MGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS+
Sbjct: 121 TSIFQRMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSS 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFV+KTGY +SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVIKTGYFESDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFG 251
           LMITRLMQFG
Sbjct: 241 LMITRLMQFG 250

BLAST of CsaV3_3G027960 vs. NCBI nr
Match: XP_008441615.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Cucumis melo] >KAA0050474.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 487.3 bits (1253), Expect = 8.9e-134
Identity = 239/250 (95.60%), Postives = 246/250 (98.40%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPS NPSSSLQFP+FTNPNPLT RLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSPNPSSSLQFPSFTNPNPLTDRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFD+GTLVHEKLT+S+LQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDLGTLVHEKLTRSNLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQ MGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS+
Sbjct: 121 TSIFQRMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSS 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFV+KTGY +SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVIKTGYFESDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFG 251
           LMITRLMQFG
Sbjct: 241 LMITRLMQFG 250

BLAST of CsaV3_3G027960 vs. NCBI nr
Match: XP_038892450.1 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Benincasa hispida])

HSP 1 Score: 454.9 bits (1169), Expect = 4.9e-124
Identity = 223/251 (88.84%), Postives = 234/251 (93.23%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPSSNPS SLQF TF NPNPLTGRLI+EIN+GRL KAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSSNPSPSLQFSTFPNPNPLTGRLIREINDGRLRKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLK+CIRTRSFD+G LVHEKLTQS+L LDSVTLNSLISLYSK GQWEKA
Sbjct: 61  GSHPDLQTYSLFLKRCIRTRSFDLGRLVHEKLTQSNLHLDSVTLNSLISLYSKSGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIF+ MGSSRDLISWSAMVSCFANNNMGF ALLTF+D+IENGYYPNEYCFAAA RACS+
Sbjct: 121 TSIFRHMGSSRDLISWSAMVSCFANNNMGFHALLTFLDIIENGYYPNEYCFAAAIRACSS 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEF  VGD IFGF++KTGY  SDVCVGCGLIDMFVKG GDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFSKVGDCIFGFIIKTGYFASDVCVGCGLIDMFVKGHGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITR MQFGY
Sbjct: 241 LMITRFMQFGY 251

BLAST of CsaV3_3G027960 vs. ExPASy Swiss-Prot
Match: Q5G1T1 (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 8.3e-58
Identity = 121/255 (47.45%), Postives = 158/255 (61.96%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLI-QEINNGRLHKAISTLEHMVH 60
           M S   P+  K+P  S         P+ +N   +  RLI + +N G L  A+S L+ M  
Sbjct: 3   MISFSFPSPAKLPIKSQ--------PSVSNRINVADRLILRHLNAGDLRGAVSALDLMAR 62

Query: 61  QGSHP-DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWE 120
            G  P D  T+S  LK CIR R F +G LVH +L + D++ DSV  NSLISLYSK G   
Sbjct: 63  DGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSA 122

Query: 121 KATSIFQLMG--SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATR 180
           KA  +F+ M     RD++SWSAM++C+ NN     A+  FV+ +E G  PN+YC+ A  R
Sbjct: 123 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIR 182

Query: 181 ACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 240
           ACS ++FV VG    GF++KTG+ +SDVCVGC LIDMFVKG     +A+KVF+KM E N 
Sbjct: 183 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 242

Query: 241 VTWTLMITRLMQFGY 252
           VTWTLMITR MQ G+
Sbjct: 243 VTWTLMITRCMQMGF 249

BLAST of CsaV3_3G027960 vs. ExPASy Swiss-Prot
Match: Q9C6T2 (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-22
Identity = 68/210 (32.38%), Postives = 112/210 (53.33%), Query Frame = 0

Query: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101
           +N     +A+     M+ +G+ PD  TY   LK C R +S   G  +H ++ +  L+ D 
Sbjct: 108 VNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADV 167

Query: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMI- 161
              NSLI++Y +CG+ E ++++F+ +  S+   SWS+MVS  A   M    LL F  M  
Sbjct: 168 FVQNSLINMYGRCGEMELSSAVFEKL-ESKTAASWSSMVSARAGMGMWSECLLLFRGMCS 227

Query: 162 ENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGD 221
           E      E    +A  AC+    +++G SI GF+++    + ++ V   L+DM+VK  G 
Sbjct: 228 ETNLKAEESGMVSALLACANTGALNLGMSIHGFLLR-NISELNIIVQTSLVDMYVK-CGC 287

Query: 222 LVSAFKVFEKMPERNAVTWTLMITRLMQFG 251
           L  A  +F+KM +RN +T++ MI+ L   G
Sbjct: 288 LDKALHIFQKMEKRNNLTYSAMISGLALHG 314

BLAST of CsaV3_3G027960 vs. ExPASy Swiss-Prot
Match: P0C898 (Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H86 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-22
Identity = 67/210 (31.90%), Postives = 112/210 (53.33%), Query Frame = 0

Query: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103
           NG L  ++S    M  QG +P+  T+S  LK C    + + G  +H    +   ++    
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 144

Query: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163
            NSL+ +YSKCG+  +A  +F+ +   R LISW+AM++ F +   G +AL TF  M E  
Sbjct: 145 GNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 204

Query: 164 Y--YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY-LQSDVCVGCGLIDMFVKGRGD 223
               P+E+   +  +ACS+   +  G  I GF+V++G+   S   +   L+D++VK  G 
Sbjct: 205 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK-CGY 264

Query: 224 LVSAFKVFEKMPERNAVTWTLMITRLMQFG 251
           L SA K F+++ E+  ++W+ +I    Q G
Sbjct: 265 LFSARKAFDQIKEKTMISWSSLILGYAQEG 292

BLAST of CsaV3_3G027960 vs. ExPASy Swiss-Prot
Match: Q9SCT2 (Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E85 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-22
Identity = 69/225 (30.67%), Postives = 116/225 (51.56%), Query Frame = 0

Query: 38  LIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL 97
           ++  + N ++   +    +M+  G  P   TYS+ L  C +  S+ +G L+H ++  SD 
Sbjct: 272 IVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDS 331

Query: 98  QLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157
             D    N+L+ +Y  CG   +A  +F  +  + +L+SW++++S  + N  G +A+L + 
Sbjct: 332 LADLPLDNALLDMYCSCGDMREAFYVFGRI-HNPNLVSWNSIISGCSENGFGEQAMLMYR 391

Query: 158 DMIE-NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK 217
            ++  +   P+EY F+AA  A +  E    G  + G V K GY +S V VG  L+ M+ K
Sbjct: 392 RLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERS-VFVGTTLLSMYFK 451

Query: 218 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYVFFIPNFDVE 262
            R +  SA KVF+ M ER+ V WT MI    + G       F +E
Sbjct: 452 NR-EAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIE 493

BLAST of CsaV3_3G027960 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 60/201 (29.85%), Postives = 101/201 (50.25%), Query Frame = 0

Query: 51  ISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISL 110
           ++    M+     P   T++  +K C    +  IG  VH     S   LD+    +L++ 
Sbjct: 92  VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTF 151

Query: 111 YSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYC 170
           YSKCG  E A  +F  M   + +++W+++VS F  N +   A+  F  M E+G+ P+   
Sbjct: 152 YSKCGDMEGARQVFDRM-PEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSAT 211

Query: 171 FAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230
           F +   AC+    VS+G  +  +++  G L  +V +G  LI+++ +  GD+  A +VF+K
Sbjct: 212 FVSLLSACAQTGAVSLGSWVHQYIISEG-LDLNVKLGTALINLYSR-CGDVGKAREVFDK 271

Query: 231 MPERNAVTWTLMITRLMQFGY 252
           M E N   WT MI+     GY
Sbjct: 272 MKETNVAAWTAMISAYGTHGY 289

BLAST of CsaV3_3G027960 vs. ExPASy TrEMBL
Match: A0A0A0LBE4 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603610 PE=3 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 4.0e-140
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST
Sbjct: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITRLMQFGY
Sbjct: 241 LMITRLMQFGY 251

BLAST of CsaV3_3G027960 vs. ExPASy TrEMBL
Match: A0A5D3BVE4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00300 PE=3 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.5e-134
Identity = 240/250 (96.00%), Postives = 246/250 (98.40%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPS NPSSSLQFP+FTNPNPLT RLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSPNPSSSLQFPSFTNPNPLTDRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFD+GTLVHEKLTQS+LQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDLGTLVHEKLTQSNLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQ MGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS+
Sbjct: 121 TSIFQRMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSS 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFV+KTGY +SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVIKTGYFESDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFG 251
           LMITRLMQFG
Sbjct: 241 LMITRLMQFG 250

BLAST of CsaV3_3G027960 vs. ExPASy TrEMBL
Match: A0A5A7U5F7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00880 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.3e-134
Identity = 239/250 (95.60%), Postives = 246/250 (98.40%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPS NPSSSLQFP+FTNPNPLT RLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSPNPSSSLQFPSFTNPNPLTDRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFD+GTLVHEKLT+S+LQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDLGTLVHEKLTRSNLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQ MGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS+
Sbjct: 121 TSIFQRMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSS 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFV+KTGY +SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVIKTGYFESDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFG 251
           LMITRLMQFG
Sbjct: 241 LMITRLMQFG 250

BLAST of CsaV3_3G027960 vs. ExPASy TrEMBL
Match: A0A1S3B4K0 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485697 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.3e-134
Identity = 239/250 (95.60%), Postives = 246/250 (98.40%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLPLPTTLKIPFPS NPSSSLQFP+FTNPNPLT RLIQEINNGRLHKAISTLEHMVHQ
Sbjct: 1   MQSLPLPTTLKIPFPSPNPSSSLQFPSFTNPNPLTDRLIQEINNGRLHKAISTLEHMVHQ 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLKKCIRTRSFD+GTLVHEKLT+S+LQLDSVTLNSLISLYSKCGQWEKA
Sbjct: 61  GSHPDLQTYSLFLKKCIRTRSFDLGTLVHEKLTRSNLQLDSVTLNSLISLYSKCGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
           TSIFQ MGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACS+
Sbjct: 121 TSIFQRMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSS 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEFVSVGDSIFGFV+KTGY +SDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT
Sbjct: 181 AEFVSVGDSIFGFVIKTGYFESDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFG 251
           LMITRLMQFG
Sbjct: 241 LMITRLMQFG 250

BLAST of CsaV3_3G027960 vs. ExPASy TrEMBL
Match: A0A6J1E6W5 (pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430501 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 5.0e-114
Identity = 210/251 (83.67%), Postives = 225/251 (89.64%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQ 60
           MQSLP PTTLKIP  SSNPS SLQFPTF+     T RLI++IN+GRL  AISTLEHMV  
Sbjct: 1   MQSLPPPTTLKIPSLSSNPSPSLQFPTFS-----TNRLIRQINDGRLRTAISTLEHMVQH 60

Query: 61  GSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKA 120
           GSHPDLQTYSLFLK+CIRTRSFD+G LVHEKLTQSDLQLDSVTLNSLISLYSK GQWEKA
Sbjct: 61  GSHPDLQTYSLFLKRCIRTRSFDLGRLVHEKLTQSDLQLDSVTLNSLISLYSKSGQWEKA 120

Query: 121 TSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACST 180
            SIF+ MG+SRDLI+WSAMVSCFANN MGF AL TF+DMI+NGYYPNEYCF+AA RACST
Sbjct: 121 KSIFEHMGNSRDLITWSAMVSCFANNKMGFEALHTFLDMIQNGYYPNEYCFSAAIRACST 180

Query: 181 AEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWT 240
           AEF SVGDSIFG+V+KTGY  SDVCVGCGLIDMFVKGRGDLVSAF+VFEKMPERNAVTWT
Sbjct: 181 AEFASVGDSIFGYVIKTGYFASDVCVGCGLIDMFVKGRGDLVSAFEVFEKMPERNAVTWT 240

Query: 241 LMITRLMQFGY 252
           LMITR MQFGY
Sbjct: 241 LMITRFMQFGY 246

BLAST of CsaV3_3G027960 vs. TAIR 10
Match: AT3G49170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-59
Identity = 121/255 (47.45%), Postives = 158/255 (61.96%), Query Frame = 0

Query: 1   MQSLPLPTTLKIPFPSSNPSSSLQFPTFTNPNPLTGRLI-QEINNGRLHKAISTLEHMVH 60
           M S   P+  K+P  S         P+ +N   +  RLI + +N G L  A+S L+ M  
Sbjct: 3   MISFSFPSPAKLPIKSQ--------PSVSNRINVADRLILRHLNAGDLRGAVSALDLMAR 62

Query: 61  QGSHP-DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWE 120
            G  P D  T+S  LK CIR R F +G LVH +L + D++ DSV  NSLISLYSK G   
Sbjct: 63  DGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSA 122

Query: 121 KATSIFQLMG--SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATR 180
           KA  +F+ M     RD++SWSAM++C+ NN     A+  FV+ +E G  PN+YC+ A  R
Sbjct: 123 KAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIR 182

Query: 181 ACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNA 240
           ACS ++FV VG    GF++KTG+ +SDVCVGC LIDMFVKG     +A+KVF+KM E N 
Sbjct: 183 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 242

Query: 241 VTWTLMITRLMQFGY 252
           VTWTLMITR MQ G+
Sbjct: 243 VTWTLMITRCMQMGF 249

BLAST of CsaV3_3G027960 vs. TAIR 10
Match: AT1G31920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-23
Identity = 68/210 (32.38%), Postives = 112/210 (53.33%), Query Frame = 0

Query: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101
           +N     +A+     M+ +G+ PD  TY   LK C R +S   G  +H ++ +  L+ D 
Sbjct: 108 VNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADV 167

Query: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMI- 161
              NSLI++Y +CG+ E ++++F+ +  S+   SWS+MVS  A   M    LL F  M  
Sbjct: 168 FVQNSLINMYGRCGEMELSSAVFEKL-ESKTAASWSSMVSARAGMGMWSECLLLFRGMCS 227

Query: 162 ENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGD 221
           E      E    +A  AC+    +++G SI GF+++    + ++ V   L+DM+VK  G 
Sbjct: 228 ETNLKAEESGMVSALLACANTGALNLGMSIHGFLLR-NISELNIIVQTSLVDMYVK-CGC 287

Query: 222 LVSAFKVFEKMPERNAVTWTLMITRLMQFG 251
           L  A  +F+KM +RN +T++ MI+ L   G
Sbjct: 288 LDKALHIFQKMEKRNNLTYSAMISGLALHG 314

BLAST of CsaV3_3G027960 vs. TAIR 10
Match: AT3G50420.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-23
Identity = 69/225 (30.67%), Postives = 116/225 (51.56%), Query Frame = 0

Query: 38  LIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDL 97
           ++  + N ++   +    +M+  G  P   TYS+ L  C +  S+ +G L+H ++  SD 
Sbjct: 272 IVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDS 331

Query: 98  QLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157
             D    N+L+ +Y  CG   +A  +F  +  + +L+SW++++S  + N  G +A+L + 
Sbjct: 332 LADLPLDNALLDMYCSCGDMREAFYVFGRI-HNPNLVSWNSIISGCSENGFGEQAMLMYR 391

Query: 158 DMIE-NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK 217
            ++  +   P+EY F+AA  A +  E    G  + G V K GY +S V VG  L+ M+ K
Sbjct: 392 RLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERS-VFVGTTLLSMYFK 451

Query: 218 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYVFFIPNFDVE 262
            R +  SA KVF+ M ER+ V WT MI    + G       F +E
Sbjct: 452 NR-EAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIE 493

BLAST of CsaV3_3G027960 vs. TAIR 10
Match: AT3G15130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-23
Identity = 67/210 (31.90%), Postives = 112/210 (53.33%), Query Frame = 0

Query: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103
           NG L  ++S    M  QG +P+  T+S  LK C    + + G  +H    +   ++    
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEV 144

Query: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENG 163
            NSL+ +YSKCG+  +A  +F+ +   R LISW+AM++ F +   G +AL TF  M E  
Sbjct: 145 GNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 204

Query: 164 Y--YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGY-LQSDVCVGCGLIDMFVKGRGD 223
               P+E+   +  +ACS+   +  G  I GF+V++G+   S   +   L+D++VK  G 
Sbjct: 205 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK-CGY 264

Query: 224 LVSAFKVFEKMPERNAVTWTLMITRLMQFG 251
           L SA K F+++ E+  ++W+ +I    Q G
Sbjct: 265 LFSARKAFDQIKEKTMISWSSLILGYAQEG 292

BLAST of CsaV3_3G027960 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-22
Identity = 60/201 (29.85%), Postives = 101/201 (50.25%), Query Frame = 0

Query: 51  ISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISL 110
           ++    M+     P   T++  +K C    +  IG  VH     S   LD+    +L++ 
Sbjct: 92  VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTF 151

Query: 111 YSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYC 170
           YSKCG  E A  +F  M   + +++W+++VS F  N +   A+  F  M E+G+ P+   
Sbjct: 152 YSKCGDMEGARQVFDRM-PEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSAT 211

Query: 171 FAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEK 230
           F +   AC+    VS+G  +  +++  G L  +V +G  LI+++ +  GD+  A +VF+K
Sbjct: 212 FVSLLSACAQTGAVSLGSWVHQYIISEG-LDLNVKLGTALINLYSR-CGDVGKAREVFDK 271

Query: 231 MPERNAVTWTLMITRLMQFGY 252
           M E N   WT MI+     GY
Sbjct: 272 MKETNVAAWTAMISAYGTHGY 289

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650806.12.3e-153100.00hypothetical protein Csa_017457 [Cucumis sativus][more]
XP_004151259.18.4e-140100.00pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Cucumis sa... [more]
TYK03154.13.1e-13496.00pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_008441615.18.9e-13495.60PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic ... [more]
XP_038892450.14.9e-12488.84pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Benincasa ... [more]
Match NameE-valueIdentityDescription
Q5G1T18.3e-5847.45Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop... [more]
Q9C6T23.3e-2232.38Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana OX... [more]
P0C8984.3e-2231.90Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis th... [more]
Q9SCT24.3e-2230.67Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana OX... [more]
P930112.1e-2129.85Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A0A0LBE44.0e-140100.00DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G6036... [more]
A0A5D3BVE41.5e-13496.00Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7U5F74.3e-13495.60Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B4K04.3e-13495.60pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Cucumis ... [more]
A0A6J1E6W55.0e-11483.67pentatricopeptide repeat-containing protein At3g49170, chloroplastic isoform X1 ... [more]
Match NameE-valueIdentityDescription
AT3G49170.15.9e-5947.45Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G31920.12.3e-2332.38Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G50420.13.1e-2330.67Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G15130.13.1e-2331.90Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G33760.11.5e-2229.85Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 134..168
e-value: 3.5E-5
score: 21.7
coord: 102..128
e-value: 1.3E-5
score: 23.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 102..129
e-value: 1.8E-6
score: 27.8
coord: 134..163
e-value: 0.0023
score: 18.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 132..166
score: 9.163705
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 100..130
score: 10.007725
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 190..255
e-value: 1.2E-5
score: 26.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 41..189
e-value: 7.6E-29
score: 103.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR47929:SF1SUBFAMILY NOT NAMEDcoord: 43..191
coord: 130..250
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 43..191
coord: 130..250

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G027960.1CsaV3_3G027960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding