CsaV3_3G026580 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G026580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 22717945 .. 22718393 (-)
RNA-Seq Expression	CsaV3_3G026580
Synteny	CsaV3_3G026580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTGGAACTCCGGATGGTTCCAGTTATTGTGCTGGTGCTGATGCTGATGCTGGTAGGGGTGCTGGTGAGGTGGGTGGGCGGGGGCGGGGGCTGGGGTGGGGTGGTGCTGAGGCTGGAAAGGAGGCGGGTGCTGCGTAGGGGGCGGAGGAGGAGGAGGAGGAGGTGGGGGGGGATGGGGAGCGTACTGAGGGGGATAATTGGGGTGGACAAAAGGGGGCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATGGAACAAGAAGAAGAAGAGAAAGGAGGGGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGAGGGAGATGA

mRNA sequence

GATTGTGGAACTCCGGATGGTTCCAGTTATTGTGCTGGTGCTGATGCTGATGCTGGTAGGGGTGCTGGTGAGCGTACTGAGGGGGATAATTGGGGTGGACAAAAGGGGGCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATGGAACAAGAAGAAGAAGAGAAAGGAGGGGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGAGGGAGATGA

Coding sequence (CDS)

GATTGTGGAACTCCGGATGGTTCCAGTTATTGTGCTGGTGCTGATGCTGATGCTGGTAGGGGTGCTGGTGAGCGTACTGAGGGGGATAATTGGGGTGGACAAAAGGGGGCCGGGATGGTGATTGGGGTATTGAACATAGGGATCAAACTGGTGATTGAAATTGGGTCGTCGGTCGTCGGAAGGCCACGACGGTGCGGAGGAAGAAGGGTGGTGCCTCTCCAGTTTTGCAGAAAAGGAATGGAACAAGAAGAAGAAGAGAAAGGAGGGGGCCTGAGAATGATCAGGCGATTGAGGATGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGAGGGAGATGA

Protein sequence

DCGTPDGSSYCAGADADAGRGAGERTEGDNWGGQKGAGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQEEEEKGGGLRMIRRLRMEEEEEEEEEGGR*

Homology

[Close]

BLAST of CsaV3_3G026580 vs. NCBI nr
Match: KAE8650755.1 (hypothetical protein Csa_023869, partial [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   DCGTPDGSSYCAGADADAGRGAGERTEGDNWGGQKGAGMVIGVLNIGIKLVIEIGSSVVG 60
           DCGTPDGSSYCAGADADAGRGAGERTEGDNWGGQKGAGMVIGVLNIGIKLVIEIGSSVVG
Sbjct: 1   DCGTPDGSSYCAGADADAGRGAGERTEGDNWGGQKGAGMVIGVLNIGIKLVIEIGSSVVG 60

Query: 61  RPRRCGGRRVVPLQFCRKGMEQEEEEKGGGLRMIRRLRMEEEEEEEEEGGR 112
           RPRRCGGRRVVPLQFCRKGMEQEEEEKGGGLRMIRRLRMEEEEEEEEEGGR
Sbjct: 61  RPRRCGGRRVVPLQFCRKGMEQEEEEKGGGLRMIRRLRMEEEEEEEEEGGR 111

[Close]

BLAST of CsaV3_3G026580 vs. ExPASy TrEMBL
Match: A0A0A0LDH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G535640 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 34  QKGAGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQEEEEKGGGLRM 93
           ++G GMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQEEEEKGGGLRM
Sbjct: 35  KRGPGMVIGVLNIGIKLVIEIGSSVVGRPRRCGGRRVVPLQFCRKGMEQEEEEKGGGLRM 94

Query: 94  IRRLRMEEEEEEEEEGGR 112
           IRRLRMEEEEEEEEEGGR
Sbjct: 95  IRRLRMEEEEEEEEEGGR 112

The following BLAST results are available for this feature:

BLAST of CsaV3_3G026580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650755.1	1.6e-52	100.00	hypothetical protein Csa_023869, partial [Cucumis sativus]	[more]

BLAST of CsaV3_3G026580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G026580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDH3	2.1e-31	96.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G535640 PE=4 SV=1	[more]

BLAST of CsaV3_3G026580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G026580.1	CsaV3_3G026580.1	mRNA