CsaV3_3G026500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G026500
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Locationchr3: 22625867 .. 22626196 (+)
RNA-Seq ExpressionCsaV3_3G026500
SyntenyCsaV3_3G026500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCCGGTGAATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGTCGGACTTCCATCGACACAGAAAGTAATCGAAGCAACTCTCCAAATTCTGAAGCCCAAGCCATTTGTCGGAGCTAATGTGTTCCTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTTTTCACGACACTTTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGCCAATCAC

mRNA sequence

CACCCGGTGAATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGTCGGACTTCCATCGACACAGAAAGTAATCGAAGCAACTCTCCAAATTCTGAAGCCCAAGCCATTTGTCGGAGCTAATGTGTTCCTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTTTTCACGACACTTTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGCCAATCAC

Coding sequence (CDS)

CACCCGGTGAATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGTCGGACTTCCATCGACACAGAAAGTAATCGAAGCAACTCTCCAAATTCTGAAGCCCAAGCCATTTGTCGGAGCTAATGTGTTCCTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTTTTCACGACACTTTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGCCAATCAC

Protein sequence

HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH
Homology
[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: KAE8650752.1 (hypothetical protein Csa_017612, partial [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 9.6e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA 60
           HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA
Sbjct: 1   HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA 60

Query: 61  NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 111
           NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH
Sbjct: 61  NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110

[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: XP_031745330.1 (LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-31
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 34  SLVGLPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCD 93
           SLVGLPSTQKVIEATLQ+LKPKPF GANVF+SRNLVA EMFD FHD  KQNGAEVFLCCD
Sbjct: 118 SLVGLPSTQKVIEATLQLLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCD 177

Query: 94  PSQNAPNDYHVISSANH 111
           PSQNAPNDYHVISSA+H
Sbjct: 178 PSQNAPNDYHVISSADH 194

[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: KAE8637338.1 (hypothetical protein CSA_000009, partial [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-31
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 34  SLVGLPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCD 93
           SLVGLPSTQKVIEATLQ+LKPKPF GANVF+SRNLVA EMFD FHD  KQNGAEVFLCCD
Sbjct: 36  SLVGLPSTQKVIEATLQLLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCD 95

Query: 94  PSQNAPNDYHVISSANH 111
           PSQNAPNDYHVISSA+H
Sbjct: 96  PSQNAPNDYHVISSADH 112

[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: XP_031745331.1 (LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-31
Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 34  SLVGLPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCD 93
           SLVGLPSTQKVIEATLQ+LKPKPF GANVF+SRNLVA EMFD FHD  KQNGAEVFLCCD
Sbjct: 27  SLVGLPSTQKVIEATLQLLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCD 86

Query: 94  PSQNAPNDYHVISSANH 111
           PSQNAPNDYHVISSA+H
Sbjct: 87  PSQNAPNDYHVISSADH 103

[Close]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match: XP_031745859.1 (LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-A [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 38  LPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQN 97
           LPSTQKVIEATLQ+LKPKPF GANVF+SRNLVA EMFD FHD  KQNGAEVFLCCDPSQN
Sbjct: 132 LPSTQKVIEATLQLLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCDPSQN 191

Query: 98  APNDYHVISSANH 111
           APNDYHVISSA+H
Sbjct: 192 APNDYHVISSADH 204

[Close]
BLAST of CsaV3_3G026500 vs. ExPASy TrEMBL
Match: A0A0A0LB04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G529590 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.9e-54
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA 60
           HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA
Sbjct: 21  HPVNVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGA 80

Query: 61  NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 111
           NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDP+QNAP+DYHVISSANH
Sbjct: 81  NVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPAQNAPDDYHVISSANH 130

[Close]
BLAST of CsaV3_3G026500 vs. ExPASy TrEMBL
Match: A0A1S4DV57 (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPKPF GANVF+SRNLVAPEMFDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. ExPASy TrEMBL
Match: A0A1S4DV59 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPKPF GANVF+SRNLVAPEMFDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. ExPASy TrEMBL
Match: A0A5D3BRP8 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00080 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPKPF GANVF+SRNLVAPEMFDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. ExPASy TrEMBL
Match: A0A5A7U8G5 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00240 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 51  ILKPKPFVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 110
           +LKPKPF GANVF+SRNLVAPEMFDA HD  KQNGAEVFLCCDPS+N PNDYHVISSA+H
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

[Close]
BLAST of CsaV3_3G026500 vs. TAIR 10
Match: AT1G77320.1 (transcription coactivators )

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 57  FVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYHVISSANH 111
           F GANVF+SRNLV PE+FD   D FK NGAE+FLCCDPS++ P+D+HVI+S +H
Sbjct: 7   FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSGPSDFHVIASPDH 60

[Close]
BLAST of CsaV3_3G026500 vs. TAIR 10
Match: AT1G77320.2 (transcription coactivators )

HSP 1 Score: 77.8 bits (190), Expect = 6.1e-15
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 0 

Query: 57  FVGANVFLSRNLVAPEMFDAFHDTFKQNGAEVFLCCDPSQNAPNDYH 104
           F GANVF+SRNLV PE+FD   D FK NGAE+FLCCDPS++ P+D+H
Sbjct: 7   FKGANVFMSRNLVPPEVFDTLLDAFKLNGAEIFLCCDPSRSGPSDFH 53

The following BLAST results are available for this feature:
BLAST of CsaV3_3G026500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650752.19.6e-55100.00hypothetical protein Csa_017612, partial [Cucumis sativus][more]
XP_031745330.11.5e-3189.61LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus][more]
KAE8637338.11.5e-3189.61hypothetical protein CSA_000009, partial [Cucumis sativus][more]
XP_031745331.11.5e-3189.61LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumi... [more]
XP_031745859.11.8e-2989.04LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-A [Cucumis sativus][more]
BLAST of CsaV3_3G026500 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G026500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB043.9e-5498.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G529590 PE=4 SV=1[more]
A0A1S4DV571.4e-2285.00DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A1S4DV591.4e-2285.00DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A5D3BRP81.4e-2285.00DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7U8G51.4e-2285.00DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=... [more]
BLAST of CsaV3_3G026500 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G77320.12.2e-1766.67transcription coactivators [more]
AT1G77320.26.1e-1568.09transcription coactivators [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G026500.1CsaV3_3G026500.1mRNA