Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCATCCTGTATTTTTCTTCTTCATGACAACAATAATGGAACTTGAAGAGTTGGAGAAGAGAATGGAAGAACTGAAAGCTATGAGCGAGAAGCAAGAAGCCACAGCAAATTACTACGACACCAAGTTGCACACTATAATTGCCGCCTATTTCATTTGGGAACGCGCTTTCTGCTTCGCCATCTCCAACAAAACTAATTCTCCTAATTATTTCTCCTCCCTCATCTGCCATGCCAACTGGCGCCTCATTCTTGCTCTAAGCTCTTTGTACAGCCTTGTTTACATTCTGCTTTATCTCGATGCTGCGTTGATGCTCTACCGGTCAGAACTAAAGCAAAATTTGATTCTCAACAAACATGCTCAACTTTATCATCAAATTTCGAAAATCAAACAAGAATTTAACTCCATTGATTCTTCATCCATGGAGGCTGAAGAGGATTTAATACTCTTGATAAACTCAAGTTCAACCTTTAGGAGGAGTGAGGAGAGAATATTTTATATGTCCACCATTTTCTGTGCTTTGGTTTGTGTTGCTTCTCTAGAATTATATGCTTGCAAGTCTATTCTTTGTTCATAATTAAGTTGCACTGGTCTTTTTGCAGTTCATATAATAGTTTTATTTAAGTATTAAGGTTTGTTAAGAGTTGGAGGTGTGGCACCTTAGGATGTAACAAATGTTTCCTTTAATTTTATATAATATGTG
mRNA sequence
ATGACAACAATAATGGAACTTGAAGAGTTGGAGAAGAGAATGGAAGAACTGAAAGCTATGAGCGAGAAGCAAGAAGCCACAGCAAATTACTACGACACCAAGTTGCACACTATAATTGCCGCCTATTTCATTTGGGAACGCGCTTTCTGCTTCGCCATCTCCAACAAAACTAATTCTCCTAATTATTTCTCCTCCCTCATCTGCCATGCCAACTGGCGCCTCATTCTTGCTCTAAGCTCTTTGTACAGCCTTGTTTACATTCTGCTTTATCTCGATGCTGCGTTGATGCTCTACCGGTCAGAACTAAAGCAAAATTTGATTCTCAACAAACATGCTCAACTTTATCATCAAATTTCGAAAATCAAACAAGAATTTAACTCCATTGATTCTTCATCCATGGAGGCTGAAGAGGATTTAATACTCTTGATAAACTCAAGTTCAACCTTTAGGAGGAGTGAGGAGAGAATATTTTATATGTCCACCATTTTCTGTGCTTTGGTTTGTGTTGCTTCTCTAGAATTATATGCTTGCAAGTCTATTCTTTGTTCATAA
Coding sequence (CDS)
ATGACAACAATAATGGAACTTGAAGAGTTGGAGAAGAGAATGGAAGAACTGAAAGCTATGAGCGAGAAGCAAGAAGCCACAGCAAATTACTACGACACCAAGTTGCACACTATAATTGCCGCCTATTTCATTTGGGAACGCGCTTTCTGCTTCGCCATCTCCAACAAAACTAATTCTCCTAATTATTTCTCCTCCCTCATCTGCCATGCCAACTGGCGCCTCATTCTTGCTCTAAGCTCTTTGTACAGCCTTGTTTACATTCTGCTTTATCTCGATGCTGCGTTGATGCTCTACCGGTCAGAACTAAAGCAAAATTTGATTCTCAACAAACATGCTCAACTTTATCATCAAATTTCGAAAATCAAACAAGAATTTAACTCCATTGATTCTTCATCCATGGAGGCTGAAGAGGATTTAATACTCTTGATAAACTCAAGTTCAACCTTTAGGAGGAGTGAGGAGAGAATATTTTATATGTCCACCATTTTCTGTGCTTTGGTTTGTGTTGCTTCTCTAGAATTATATGCTTGCAAGTCTATTCTTTGTTCATAA
Protein sequence
MTTIMELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFSSLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQEFNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILCS*
Homology
BLAST of CsaV3_3G024990 vs. NCBI nr
Match:
KAE8650729.1 (hypothetical protein Csa_023412 [Cucumis sativus])
HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query: 1 MTTIMELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSP 60
MTTIMELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSP
Sbjct: 1 MTTIMELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSP 60
Query: 61 NYFSSLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISK 120
NYFSSLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISK
Sbjct: 61 NYFSSLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISK 120
Query: 121 IKQEFNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSI 180
IKQEFNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSI
Sbjct: 121 IKQEFNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSI 180
Query: 181 LCS 184
LCS
Sbjct: 181 LCS 183
BLAST of CsaV3_3G024990 vs. NCBI nr
Match:
KAG6579352.1 (hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 171.0 bits (432), Expect = 9.5e-39
Identity = 105/189 (55.56%), Postives = 130/189 (68.78%), Query Frame = 0
Query: 5 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 64
ME+EEL+K MEE++ M EK EA NYYDTKLHTII AYF+WER F F IS KT P+ S
Sbjct: 1 MEVEELKKMMEEVQGMGEKVEAKVNYYDTKLHTIIVAYFVWERVFFFGISKKT-FPSTIS 60
Query: 65 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 124
+L C+ NW +ILALS S VY+LL+ DAALMLYR E + +LIL KHAQL + IK+E
Sbjct: 61 TLSCNGNWWVILALSCSCSFVYVLLFFDAALMLYRHENQLHLILQKHAQLCRHLLAIKEE 120
Query: 125 FNSIDSSSMEAE---------EDLILLINSSSTFRRSE--ERIFYMSTIFCALVCVASLE 183
+S MEA E+ ++LINS+S FRR ER ++ TIFCA + VASLE
Sbjct: 121 QADTKASLMEAGDQASHGLSLEEELMLINSTSPFRRRRPWERKVHVYTIFCAFIGVASLE 180
BLAST of CsaV3_3G024990 vs. NCBI nr
Match:
KAG6579345.1 (hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 169.9 bits (429), Expect = 2.1e-38
Identity = 106/193 (54.92%), Postives = 129/193 (66.84%), Query Frame = 0
Query: 1 MTTIMELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSP 60
MT + EEL+K MEE++ M E EA NYYDTKLH II AYF+WER F F IS KT P
Sbjct: 1 MTKMEVEEELKKMMEEVQGMGENVEAKVNYYDTKLHNIIVAYFVWERVFFFGISKKTFPP 60
Query: 61 NYFSSLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISK 120
S+L C+ NW +ILALSS S VY+LL+ D ALMLYR E + +LIL KHAQL +
Sbjct: 61 T-ISTLSCNGNWWVILALSSSCSFVYVLLFFDTALMLYRHENQLHLILQKHAQLCRHLLA 120
Query: 121 IKQEFNSIDSSSMEAE---------EDLILLINSSSTFRRSE--ERIFYMSTIFCALVCV 180
IK+E I +S MEA E+ ++LINS+S FRR ER Y+ TIFCAL+ V
Sbjct: 121 IKEEQADIKASLMEAGDEASHGLSLEEELMLINSTSPFRRRRPWERKVYVYTIFCALIGV 180
Query: 181 ASLELYACKSILC 183
ASLELYACK++LC
Sbjct: 181 ASLELYACKAVLC 192
BLAST of CsaV3_3G024990 vs. NCBI nr
Match:
KAG6579344.1 (hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 153.7 bits (387), Expect = 1.6e-33
Identity = 98/188 (52.13%), Postives = 125/188 (66.49%), Query Frame = 0
Query: 5 MELEE-LEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERA-----FCFAISNKTN 64
ME+EE +EKRMEE+K M EK E NYYDTKLH II AY +WER F F +SN TN
Sbjct: 1 MEIEEQMEKRMEEVKGMWEKVEGRVNYYDTKLHAIIVAYLVWERVFFFFFFFFGVSN-TN 60
Query: 65 SPNYFSSLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQI 124
+ S+L C+ W +I+ALS L S VY+LL++DAALMLY + + NLIL H QLY Q+
Sbjct: 61 FASNISTLSCNGKWWVIVALSCLCSFVYMLLFVDAALMLYPHQNQLNLILQTHHQLYRQL 120
Query: 125 SKIK---QEFNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELY 184
IK E S + EE+L+L+ ++++ RR R FY+ TIFCAL+ VASLELY
Sbjct: 121 LAIKDSLMEAGDEASHGLSLEEELMLINSNAAYRRRPWGRKFYVYTIFCALIDVASLELY 180
BLAST of CsaV3_3G024990 vs. NCBI nr
Match:
KGN51471.1 (hypothetical protein Csa_009166 [Cucumis sativus])
HSP 1 Score: 84.0 bits (206), Expect = 1.5e-12
Identity = 60/179 (33.52%), Postives = 103/179 (57.54%), Query Frame = 0
Query: 7 LEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFSSL 66
+EE++K +EEL AM++ Q+ Y+T L I A+ +W R F F++S SPN SSL
Sbjct: 6 IEEMQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQ--TSPN--SSL 65
Query: 67 ICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQEFN 126
+ +W L+ AL+ + +YILL++ +LML R+E + ++I + QL+ QI ++ +
Sbjct: 66 LHCKHWWLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQ-- 125
Query: 127 SIDSSSMEAEEDLIL--LINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILCS 184
+ E +I+ +IN + ER Y++ I C + + +LELYA +S+LC+
Sbjct: 126 ----ELPQMIEPIIMDHIINGEMGRTSTFERKLYINCILCGFIGIVALELYASRSLLCN 174
BLAST of CsaV3_3G024990 vs. ExPASy TrEMBL
Match:
A0A0A0L822 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1)
HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
Query: 5 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 64
MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS
Sbjct: 1 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 60
Query: 65 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 124
SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE
Sbjct: 61 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 120
Query: 125 FNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILCS 184
FNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILCS
Sbjct: 121 FNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILCS 179
BLAST of CsaV3_3G024990 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 7.4e-13
Identity = 67/189 (35.45%), Postives = 107/189 (56.61%), Query Frame = 0
Query: 5 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 64
M L ELE++ EELK ++EKQE+ YY+TK+ I+ Y I+ R F F IS ++S N
Sbjct: 1 MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFN--- 60
Query: 65 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 124
C +W +ILALS L S +Y LL+LDA ML+R++ + ++I + +L+ QI K +
Sbjct: 61 ---C-KDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQ 120
Query: 125 FNSIDSSSMEAEE----------DLILLINSSSTFRRSEERIFYMSTIFCALVCVASLEL 184
+ SME E + +L+++ FR +++ T+ AL+ V ++EL
Sbjct: 121 DDV--GLSMETGESSGGFEFGFHEKMLMLDH---FRIVGRKVYIYFTV-SALLAVTAIEL 176
BLAST of CsaV3_3G024990 vs. ExPASy TrEMBL
Match:
A0A0A0KUT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G562290 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 7.4e-13
Identity = 60/179 (33.52%), Postives = 103/179 (57.54%), Query Frame = 0
Query: 7 LEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFSSL 66
+EE++K +EEL AM++ Q+ Y+T L I A+ +W R F F++S SPN SSL
Sbjct: 6 IEEMQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQ--TSPN--SSL 65
Query: 67 ICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQEFN 126
+ +W L+ AL+ + +YILL++ +LML R+E + ++I + QL+ QI ++ +
Sbjct: 66 LHCKHWWLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQ-- 125
Query: 127 SIDSSSMEAEEDLIL--LINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILCS 184
+ E +I+ +IN + ER Y++ I C + + +LELYA +S+LC+
Sbjct: 126 ----ELPQMIEPIIMDHIINGEMGRTSTFERKLYINCILCGFIGIVALELYASRSLLCN 174
BLAST of CsaV3_3G024990 vs. ExPASy TrEMBL
Match:
A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 2.8e-12
Identity = 64/183 (34.97%), Postives = 104/183 (56.83%), Query Frame = 0
Query: 5 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 64
M+L L++ EELK ++EKQE +Y+++ I Y IWER F FA+S +T+SP
Sbjct: 1 MKLRVLKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALS-QTSSP---- 60
Query: 65 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 124
L C +WR++L LS + S VY LL+L+A MLYR++ + ++I + + + QI +
Sbjct: 61 -LKC-IDWRVVLGLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQ 120
Query: 125 FNSIDSSSMEAEE-----------DLILLINSSSTFRRSEERIFYMSTIFCALVCVASLE 177
+ S+MEA + + +N +FR ++++ Y+S I +LV V +LE
Sbjct: 121 DDG--GSAMEAGDLSDGVAFNFSFHMRTTLNYDYSFRIFQKKV-YISAIISSLVAVTALE 173
BLAST of CsaV3_3G024990 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 2.8e-12
Identity = 64/191 (33.51%), Postives = 99/191 (51.83%), Query Frame = 0
Query: 5 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 64
ME EL++ E LK + EKQE+ Y++++ I AY IW R F FAIS + S
Sbjct: 1 MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTS------S 60
Query: 65 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 124
SL+ +W ++L LS + VY L +L+A MLYR + + ++I + A++ QI + +
Sbjct: 61 SLLKCIDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQ 120
Query: 125 FNSIDSSSMEAEEDLILLINSSSTFR-------------RSEERIFYMSTIFCALVCVAS 183
+ +D +MEA + SS F+ R ER FY+ AL+ V +
Sbjct: 121 LDDVD-LAMEAGD-------SSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTA 177
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8650729.1 | 1.8e-90 | 100.00 | hypothetical protein Csa_023412 [Cucumis sativus] | [more] |
KAG6579352.1 | 9.5e-39 | 55.56 | hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579345.1 | 2.1e-38 | 54.92 | hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579344.1 | 1.6e-33 | 52.13 | hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN51471.1 | 1.5e-12 | 33.52 | hypothetical protein Csa_009166 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L822 | 1.4e-88 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1 | [more] |
A0A6J1DSQ0 | 7.4e-13 | 35.45 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A0A0KUT0 | 7.4e-13 | 33.52 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G562290 PE=4 SV=1 | [more] |
A0A6J1DTV6 | 2.8e-12 | 34.97 | uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DS87 | 2.8e-12 | 33.51 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
Match Name | E-value | Identity | Description | |