CsaV3_3G023490 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr3: 21183322 .. 21183531 (+)
RNA-Seq Expression	CsaV3_3G023490
Synteny	CsaV3_3G023490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGAATAGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACAATGGATTACAAG

mRNA sequence

TTTGGAATAGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACAATGGATTACAAG

Coding sequence (CDS)

TTTGGAATAGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACAATGGATTACAAG

Protein sequence

FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYMERPTTMDYK

Homology

[Close]

BLAST of CsaV3_3G023490 vs. NCBI nr
Match: KGN58082.2 (hypothetical protein Csa_010211, partial [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 1.7e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
          FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY
Sbjct: 1  FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60

Query: 61 MERPTTMDYK 71
          MERPTTMDYK
Sbjct: 61 MERPTTMDYK 70

[Close]

BLAST of CsaV3_3G023490 vs. NCBI nr
Match: XP_031742485.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
           FG+ADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY
Sbjct: 42  FGMADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 101

Query: 61  MERPTTMDYK 71
           MERPTTM YK
Sbjct: 102 MERPTTMHYK 111

[Close]

BLAST of CsaV3_3G023490 vs. NCBI nr
Match: XP_031742070.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
           FG+ADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY
Sbjct: 37  FGMADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 96

Query: 61  MERPTTMDYK 71
           MERPTTM YK
Sbjct: 97  MERPTTMHYK 106

[Close]

BLAST of CsaV3_3G023490 vs. NCBI nr
Match: KAE8648201.1 (hypothetical protein Csa_018467, partial [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 7.3e-32
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
          FG+ADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSY VGMASRY
Sbjct: 1  FGMADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRY 60

Query: 61 MERPTTMDYK 71
          MERPTTM YK
Sbjct: 61 MERPTTMHYK 70

[Close]

BLAST of CsaV3_3G023490 vs. NCBI nr
Match: XP_031741734.1 (uncharacterized protein LOC116403928 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 6.2e-31
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
           FG+ADCNATKYPMEPKAQLHK+T+GAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY
Sbjct: 142 FGMADCNATKYPMEPKAQLHKETKGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 201

Query: 61  MERPTTMDYK 71
           +ERPTTM YK
Sbjct: 202 IERPTTMHYK 211

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-08
Identity = 33/58 (56.90%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 8    ATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYMERPT 66
            AT     PK  LH  T+  P D TEYR IVG L+YL  TRPDLSYAV   S+YM  PT
Sbjct: 1205 ATPMATSPKLTLHSGTK-LP-DPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPT 1260

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.9e-08
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 2   GIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYM 61
           G+ DC     P+  K      T   P D +++RSIVG L+YL  TRPD+SYAV +  + M
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 62  ERPTTMDY 70
             PT  D+
Sbjct: 130 HEPTLADF 136

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.9e-07
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 12   PMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYMERPT 66
            PM P  +L   +     D TEYR IVG L+YL  TRPD+SYAV   S++M  PT
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPT 1277

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 44.3 bits (103), Expect = 6.7e-04
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 1    FGIADCNATKYPMEPKAQ---LHKDTEGAPIDATEYRSIVGCLRY-LLNTRPDLSYAVGM 60
            F + +CNA   P+  K     L+ D +      T  RS++GCL Y +L TRPDL+ AV +
Sbjct: 1150 FNMENCNAVSTPLPSKINYELLNSDED----CNTPCRSLIGCLMYIMLCTRPDLTTAVNI 1209

Query: 61   ASRYMER 64
             SRY  +
Sbjct: 1210 LSRYSSK 1212

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy TrEMBL
Match: A0A0A9FJ50 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 51/70 (72.86%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1   FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
           FG+ D N TKYPME KAQ+HKD++G P+DATEYR +VGCLRYLL+TRPDLS+AVG+ASR+
Sbjct: 79  FGMEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRRVVGCLRYLLHTRPDLSHAVGVASRH 138

Query: 61  MERPTTMDYK 71
           MERPT M  K
Sbjct: 139 MERPTVMHQK 148

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-23
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1    FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
            FG+  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TRPDLSYAVG+ASR+
Sbjct: 1171 FGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRF 1230

Query: 61   MERPTTMDYK 71
            MERPTTM  K
Sbjct: 1231 MERPTTMHLK 1240

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-23
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1    FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
            FG+  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TRPDLSYAVG+ASR+
Sbjct: 1171 FGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRF 1230

Query: 61   MERPTTMDYK 71
            MERPTTM  K
Sbjct: 1231 MERPTTMHLK 1240

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy TrEMBL
Match: A0A0P0XB91 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-23
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1    FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
            FG+  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TRPDLSYAVG+ASR+
Sbjct: 1171 FGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRF 1230

Query: 61   MERPTTMDYK 71
            MERPTTM  K
Sbjct: 1231 MERPTTMHLK 1240

[Close]

BLAST of CsaV3_3G023490 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   FGIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 60
           FG+ DCN TK PMEP++QL+KD EG P+DATEYR  +GCLRYL++TRPDL YAVG+ASR+
Sbjct: 200 FGMFDCNPTKIPMEPRSQLNKDPEGQPVDATEYRRFIGCLRYLVHTRPDLLYAVGVASRF 259

Query: 61  MERPTTMDYK 71
           MERPT M +K
Sbjct: 260 MERPTVMHHK 269

[Close]

BLAST of CsaV3_3G023490 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 7.1e-09
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 2   GIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYM 61
           G+ DC     P+  K      T   P D +++RSIVG L+YL  TRPD+SYAV +  + M
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 62  ERPTTMDY 70
             PT  D+
Sbjct: 130 HEPTLADF 136

[Close]

BLAST of CsaV3_3G023490 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 23/63 (36.51%), Postives = 34/63 (53.97%), Query Frame = 0


Query: 2   GIADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYM 61
           G+  C  +  PM+P       + G  +DA  YR ++G L YL  TR D+S+AV   S++ 
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

Query: 62  ERP 65
           E P
Sbjct: 407 EAP 409

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58082.2	1.7e-33	100.00	hypothetical protein Csa_010211, partial [Cucumis sativus]	[more]
XP_031742485.1	2.5e-32	97.14	secreted RxLR effector protein 161-like [Cucumis sativus]	[more]
XP_031742070.1	2.5e-32	97.14	secreted RxLR effector protein 161-like [Cucumis sativus]	[more]
KAE8648201.1	7.3e-32	95.71	hypothetical protein Csa_018467, partial [Cucumis sativus]	[more]
XP_031741734.1	6.2e-31	92.86	uncharacterized protein LOC116403928 [Cucumis sativus]	[more]

BLAST of CsaV3_3G023490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.5e-08	56.90	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	9.9e-08	41.18	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	4.9e-07	50.00	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	6.7e-04	38.81	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of CsaV3_3G023490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9FJ50	6.7e-23	72.86	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax O...	[more]
Q0J8A6	8.7e-23	71.43	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
B8BDZ6	8.7e-23	71.43	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4...	[more]
A0A0P0XB91	8.7e-23	71.43	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
A0A5K0VEQ6	1.1e-22	70.00	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nym...	[more]

BLAST of CsaV3_3G023490 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	7.1e-09	41.18	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	3.0e-07	36.51	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023490.1	CsaV3_3G023490.1	mRNA