CsaV3_3G023330 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G023330
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Integrase catalytic domain-containing protein
Location	chr3: 20899213 .. 20899424 (-)
RNA-Seq Expression	CsaV3_3G023330
Synteny	CsaV3_3G023330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTATGTGTCAAAGTGGAATGAAGCAATCTTTTATGCGAAGAATGATGCGGTTACAGTAATCAAGTTTTTGAAAAGAAACATCTTCACGCAATTTGGGACCCCTAGAGCCCTTATCAGCAATGAAGGATTTCAATTCATTAATCACATCATGGCCAATTTACTCGTGAAGTACAATATCACCCATAAAATTACCACCATCTACGACCCTTAG

mRNA sequence

TATGTGTCAAAGTGGAATGAAGCAATCTTTTATGCGAAGAATGATGCGGTTACAGTAATCAAGTTTTTGAAAAGAAACATCTTCACGCAATTTGGGACCCCTAGAGCCCTTATCAGCAATGAAGGATTTCAATTCATTAATCACATCATGGCCAATTTACTCGTGAAGTACAATATCACCCATAAAATTACCACCATCTACGACCCTTAG

Coding sequence (CDS)

TATGTGTCAAAGTGGAATGAAGCAATCTTTTATGCGAAGAATGATGCGGTTACAGTAATCAAGTTTTTGAAAAGAAACATCTTCACGCAATTTGGGACCCCTAGAGCCCTTATCAGCAATGAAGGATTTCAATTCATTAATCACATCATGGCCAATTTACTCGTGAAGTACAATATCACCCATAAAATTACCACCATCTACGACCCTTAG

Protein sequence

YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNITHKITTIYDP*

Homology

[Close]

BLAST of CsaV3_3G023330 vs. NCBI nr
Match: KAE8650709.1 (hypothetical protein Csa_023704, partial [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
          YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT
Sbjct: 1  YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60

Query: 61 HKITTIYDP 70
          HKITTIYDP
Sbjct: 61 HKITTIYDP 69

[Close]

BLAST of CsaV3_3G023330 vs. NCBI nr
Match: XP_038902507.1 (uncharacterized protein LOC120089165 [Benincasa hispida])

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW EA+  A+NDA TV KFL RNIFT+FGTPRALIS+EG  FINHI++ LL KYN+ 
Sbjct: 185 YVSKWVEAVACARNDASTVSKFLTRNIFTRFGTPRALISDEGTHFINHIISKLLAKYNVR 244

Query: 61  HKITTIYDP 70
           HKI T Y P
Sbjct: 245 HKIATAYHP 253

[Close]

BLAST of CsaV3_3G023330 vs. NCBI nr
Match: KAA0037873.1 (uncharacterized protein E6C27_scaffold36G00370 [Cucumis melo var. makuwa] >TYJ98011.1 uncharacterized protein E5676_scaffold487G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW EAIFY KND +TV KFLKRNIFT+F TPRALI  EG  FIN ++A LL KYNI 
Sbjct: 38  YVSKWVEAIFYVKNDVITVSKFLKRNIFTRFETPRALIKGEGSHFINRMIAKLLSKYNII 97

Query: 61  HKITTIYDP 70
           HK+  +Y P
Sbjct: 98  HKVAIVYHP 106

[Close]

BLAST of CsaV3_3G023330 vs. NCBI nr
Match: XP_038885788.1 (uncharacterized protein LOC120076080 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 43/69 (62.32%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
          YVSKW EAI  AKNDA T++KFLK+NIFT++GTPRALI++EG  FI+ I+ NLL+K+N++
Sbjct: 19 YVSKWVEAIACAKNDAATMVKFLKKNIFTRYGTPRALINDEGTYFIDRIITNLLIKFNVS 78

Query: 61 HKITTIYDP 70
          H++ T Y P
Sbjct: 79 HRVATAYHP 87

[Close]

BLAST of CsaV3_3G023330 vs. NCBI nr
Match: XP_038902449.1 (uncharacterized protein LOC120089096 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 6.6e-17
Identity = 46/69 (66.67%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW EA+  AKNDA TV KFL RNIFT +GTPR LIS+EG  FIN I++ LL KYN+ 
Sbjct: 38  YVSKWVEAVACAKNDASTVSKFLTRNIFTHYGTPRTLISDEGTHFINRIISKLLAKYNVR 97

Query: 61  HKITTIYDP 70
           HKI T Y P
Sbjct: 98  HKIATAYHP 106

[Close]

BLAST of CsaV3_3G023330 vs. ExPASy TrEMBL
Match: A0A5A7T4G3 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00340 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 47/69 (68.12%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW EAIFY KND +TV KFLKRNIFT+F TPRALI  EG  FIN ++A LL KYNI 
Sbjct: 38  YVSKWVEAIFYVKNDVITVSKFLKRNIFTRFETPRALIKGEGSHFINRMIAKLLSKYNII 97

Query: 61  HKITTIYDP 70
           HK+  +Y P
Sbjct: 98  HKVAIVYHP 106

[Close]

BLAST of CsaV3_3G023330 vs. ExPASy TrEMBL
Match: A0A5D3CLK1 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00010 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.5e-17
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
          YVSKW +AIF AKND +TV +FLK+NIF++FG PRA+IS EG  FIN I+A LL KYNI 
Sbjct: 26 YVSKWIKAIFRAKNDVMTVGRFLKKNIFSRFGAPRAIISYEGSHFINRIIAKLLAKYNIN 85

Query: 61 HKITTIYDP 70
          H+++T Y P
Sbjct: 86 HRVSTAYHP 94

[Close]

BLAST of CsaV3_3G023330 vs. ExPASy TrEMBL
Match: A0A5A7VAB1 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00800 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.5e-17
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YVSKW +AIF AKND +TV +FLK+NIF++FG PRA+IS EG  FIN I+A LL KYNI 
Sbjct: 98  YVSKWIKAIFRAKNDVMTVGRFLKKNIFSRFGAPRAIISYEGSHFINRIIAKLLAKYNIN 157

Query: 61  HKITTIYDP 70
           H+++T Y P
Sbjct: 158 HRVSTAYHP 166

[Close]

BLAST of CsaV3_3G023330 vs. ExPASy TrEMBL
Match: A0A5D3BTP4 (Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00690 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           Y+SKW EA+ Y K+DA+TV  FLK+ IFT+FGTP+ALIS+EG  FIN IMA LL KYNIT
Sbjct: 44  YISKWIEAVSYMKSDAITVHNFLKKIIFTRFGTPQALISDEGSHFINCIMAKLLAKYNIT 103

Query: 61  HKITT 66
           H++TT
Sbjct: 104 HEVTT 108

[Close]

BLAST of CsaV3_3G023330 vs. ExPASy TrEMBL
Match: A0A2K3NGQ1 (Integrase catalytic domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g025512 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.6e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   YVSKWNEAIFYAKNDAVTVIKFLKRNIFTQFGTPRALISNEGFQFINHIMANLLVKYNIT 60
           YV+KW EA+    NDA TV+KFLK+N+FT+FG PR LIS+ G  FINH +ANLL KYN+ 
Sbjct: 212 YVTKWVEAMACQANDAATVVKFLKKNVFTRFGVPRVLISDGGKHFINHHLANLLKKYNVK 271

Query: 61  HKITTIYDP 70
           HK+ T Y P
Sbjct: 272 HKVATPYHP 280

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650709.1	2.8e-31	100.00	hypothetical protein Csa_023704, partial [Cucumis sativus]	[more]
XP_038902507.1	2.1e-18	69.57	uncharacterized protein LOC120089165 [Benincasa hispida]	[more]
KAA0037873.1	2.7e-18	68.12	uncharacterized protein E6C27_scaffold36G00370 [Cucumis melo var. makuwa] >TYJ98...	[more]
XP_038885788.1	1.3e-17	62.32	uncharacterized protein LOC120076080 [Benincasa hispida]	[more]
XP_038902449.1	6.6e-17	66.67	uncharacterized protein LOC120089096 [Benincasa hispida]	[more]

BLAST of CsaV3_3G023330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G023330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T4G3	1.3e-18	68.12	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CLK1	5.5e-17	63.77	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G000...	[more]
A0A5A7VAB1	5.5e-17	63.77	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0080...	[more]
A0A5D3BTP4	2.1e-16	67.69	Retrovirus-related Pol polyprotein from transposon 412 family OS=Cucumis melo va...	[more]
A0A2K3NGQ1	4.6e-16	60.87	Integrase catalytic domain-containing protein OS=Trifolium pratense OX=57577 GN=...	[more]

BLAST of CsaV3_3G023330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..69 e-value: 9.8E-14 score: 53.4
None	No IPR available	PANTHER	PTHR46148:SF31	PROTEIN NYNRIN-LIKE	coord: 1..67
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..67
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..69 score: 8.889731
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023330.1	CsaV3_3G023330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding