CsaV3_3G022190 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATATTCTGATCACCGGATCCACAAATGAAATAAGTGACTTGGCAAAGGATCTTTTGAAATTAGGGTTCAAGCTAAAAGAGCTTCACCACGCAAAATATTTCCTCGGCCTTGAACTTTCAAGATCCACATTTGGAATATACATATTCCAGAGGAAATTATTGCCTACAAATCATTGA GATATTCTGATCACCGGATCCACAAATGAAATAAGTGACTTGGCAAAGGATCTTTTGAAATTAGGGTTCAAGCTAAAAGAGCTTCACCACGCAAAATATTTCCTCGGCCTTGAACTTTCAAGATCCACATTTGGAATATACATATTCCAGAGGAAATTATTGCCTACAAATCATTG GATATTCTGATCACCGGATCCACAAATGAAATAAGTGACTTGGCAAAGGATCTTTTGAAATTAGGGTTCAAGCTAAAAGAGCTTCACCACGCAAAATATTTCCTCGGCCTTGAACTTTCAAGATCCACATTTGGAATATACATATTCCAGAGGAAATTATTGCCTACAAATCATTG DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRKLLPTNHX Homology
BLAST of CsaV3_3G022190 vs. NCBI nr
Match: KAE8650653.1 (hypothetical protein Csa_023709, partial [Cucumis sativus]) HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. NCBI nr
Match: XP_038896371.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]) HSP 1 Score: 60.1 bits (144), Expect = 7.5e-06 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. NCBI nr
Match: KAA0037194.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13878.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. NCBI nr
Match: XP_038879273.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]) HSP 1 Score: 57.0 bits (136), Expect = 6.4e-05 Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. NCBI nr
Match: PHU19981.1 (hypothetical protein BC332_11132 [Capsicum chinense]) HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04 Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A5A7T140 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00650 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05 Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A3Q7GVD8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.3e-05 Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A5D3BDH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001210 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 6.9e-05 Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A2G3CMM5 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_11132 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 6.9e-05 Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A3Q7G6D1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04 Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of CsaV3_3G022190 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 47.8 bits (112), Expect = 3.6e-06 Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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