CsaV3_3G022190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G022190
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr3: 19452438 .. 19452616 (+)
RNA-Seq ExpressionCsaV3_3G022190
SyntenyCsaV3_3G022190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTCTGATCACCGGATCCACAAATGAAATAAGTGACTTGGCAAAGGATCTTTTGAAATTAGGGTTCAAGCTAAAAGAGCTTCACCACGCAAAATATTTCCTCGGCCTTGAACTTTCAAGATCCACATTTGGAATATACATATTCCAGAGGAAATTATTGCCTACAAATCATTGA

mRNA sequence

GATATTCTGATCACCGGATCCACAAATGAAATAAGTGACTTGGCAAAGGATCTTTTGAAATTAGGGTTCAAGCTAAAAGAGCTTCACCACGCAAAATATTTCCTCGGCCTTGAACTTTCAAGATCCACATTTGGAATATACATATTCCAGAGGAAATTATTGCCTACAAATCATTG

Coding sequence (CDS)

GATATTCTGATCACCGGATCCACAAATGAAATAAGTGACTTGGCAAAGGATCTTTTGAAATTAGGGTTCAAGCTAAAAGAGCTTCACCACGCAAAATATTTCCTCGGCCTTGAACTTTCAAGATCCACATTTGGAATATACATATTCCAGAGGAAATTATTGCCTACAAATCATTG

Protein sequence

DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRKLLPTNHX
Homology
BLAST of CsaV3_3G022190 vs. NCBI nr
Match: KAE8650653.1 (hypothetical protein Csa_023709, partial [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRKLLPTNH 59
          DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRKLLPTNH
Sbjct: 1  DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRKLLPTNH 58

BLAST of CsaV3_3G022190 vs. NCBI nr
Match: XP_038896371.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 7.5e-06
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1   DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRK 53
           DIL+TG + +I    K++LK  FKLK+L +AKYFLGLELSRS  GI I QRK
Sbjct: 77  DILLTGPSPQIISSVKEVLKGHFKLKDLGYAKYFLGLELSRSQQGIMISQRK 128

BLAST of CsaV3_3G022190 vs. NCBI nr
Match: KAA0037194.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13878.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1   DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRK 53
           DIL+T S+ +I +  K++LK  FKLK+L  AKYFLGLELSRS  GI I QRK
Sbjct: 513 DILLTRSSLQIINSVKEVLKGHFKLKDLGQAKYFLGLELSRSQQGIMISQRK 564

BLAST of CsaV3_3G022190 vs. NCBI nr
Match: XP_038879273.1 (uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida])

HSP 1 Score: 57.0 bits (136), Expect = 6.4e-05
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 1   DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRK 53
           DIL+TG + +I    K++LK  FKLK+L HAK FLGL+LSRS  GI I QRK
Sbjct: 185 DILLTGPSPQIISSVKEVLKGHFKLKDLGHAKDFLGLKLSRSQQGIMISQRK 236

BLAST of CsaV3_3G022190 vs. NCBI nr
Match: PHU19981.1 (hypothetical protein BC332_11132 [Capsicum chinense])

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 1  DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRKLL 55
          D+LITGS +++ D AK  L   FKLK+L   KYFLG+E+ RS+ G+ + QRK +
Sbjct: 41 DLLITGSNDQLIDAAKQTLHQKFKLKDLGQLKYFLGIEVLRSSAGVILNQRKYI 94

BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A5A7T140 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00650 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 1   DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRK 53
           DIL+T S+ +I +  K++LK  FKLK+L  AKYFLGLELSRS  GI I QRK
Sbjct: 513 DILLTRSSLQIINSVKEVLKGHFKLKDLGQAKYFLGLELSRSQQGIMISQRK 564

BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A3Q7GVD8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.3e-05
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 1   DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRK 53
           D+LITGS  ++    KD L+L FK+K+L + KYFLG+EL+R+  GI + QRK
Sbjct: 189 DLLITGSDGDLIRATKDHLQLSFKIKDLGNLKYFLGIELARNRDGILMHQRK 240

BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A5D3BDH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G001210 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.9e-05
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0

Query: 1   DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRK 53
           D+L+TG +  + +  K+ LK  FKLK+L  AKYFLGLELSRS  G+ + QRK
Sbjct: 368 DLLLTGPSPSVINSVKNTLKAHFKLKDLGKAKYFLGLELSRSQQGLMLSQRK 419

BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A2G3CMM5 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_11132 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.9e-05
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 1  DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRKLL 55
          D+LITGS +++ D AK  L   FKLK+L   KYFLG+E+ RS+ G+ + QRK +
Sbjct: 41 DLLITGSNDQLIDAAKQTLHQKFKLKDLGQLKYFLGIEVLRSSAGVILNQRKYI 94

BLAST of CsaV3_3G022190 vs. ExPASy TrEMBL
Match: A0A3Q7G6D1 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 1   DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRK 53
           D+LITGS+  + D AK +LK  FK+K+L   +YFLG+E +R++ GI + QRK
Sbjct: 171 DLLITGSSKRLIDNAKQVLKDNFKIKDLGDLRYFLGIEFARNSQGILMHQRK 222

BLAST of CsaV3_3G022190 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 47.8 bits (112), Expect = 3.6e-06
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0

Query: 1   DILITGSTNEISDLAKDLLKLGFKLKELHHAKYFLGLELSRSTFGIYIFQRK 53
           DI+I  + +   D  K  LK  FKL++L   KYFLGLE++RS  GI I QRK
Sbjct: 286 DIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650653.12.3e-23100.00hypothetical protein Csa_023709, partial [Cucumis sativus][more]
XP_038896371.17.5e-0661.54uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida][more]
KAA0037194.12.9e-0561.54Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_038879273.16.4e-0559.62uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida][more]
PHU19981.11.4e-0450.00hypothetical protein BC332_11132 [Capsicum chinense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T1401.4e-0561.54Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A3Q7GVD85.3e-0551.92Reverse transcriptase Ty1/copia-type domain-containing protein OS=Solanum lycope... [more]
A0A5D3BDH66.9e-0553.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A2G3CMM56.9e-0550.00Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_11132 PE=4 SV=1[more]
A0A3Q7G6D11.2e-0450.00Reverse transcriptase Ty1/copia-type domain-containing protein OS=Solanum lycope... [more]
Match NameE-valueIdentityDescription
AT4G23160.13.6e-0650.00cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G022190.1CsaV3_3G022190.1mRNA