CsaV3_3G021650 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G021650
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Olfactory receptor 4C13 like
Location	chr3: 18761899 .. 18762638 (+)
RNA-Seq Expression	CsaV3_3G021650
Synteny	CsaV3_3G021650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCGAATCGCTGGGGATAAATTGAGTGGGAGCAAAAAAACCTCTACAACACACACCTTCCCAATTCGCTTCACACAAGATCACCATTTTTCTCTCTTCTTCTTCCCTCCGCCCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAATCTGATTCTTCTTTTTCTCCTGCGCTCTTTCTAATTCTTCAAATAATCTGACTTTAAATAACCCTGAAAACGTACAAACATCAATAGAAATGTTTACATCAAAATTTAGTACTATGAACATATGTAATTTAGTATAAATATACGCATGCTAGGGATTTTTTTCACAAAA

mRNA sequence

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA

Coding sequence (CDS)

ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAATAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA

Protein sequence

MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK*

Homology

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BLAST of CsaV3_3G021650 vs. NCBI nr
Match: KGN57848.1 (hypothetical protein Csa_010872 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: TYK22452.1 (hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 130/151 (86.09%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSH  HLLFFSTHFSF ILSTS ILSIFALLIFLCTSS KSNKSQQG+  
Sbjct: 1   MARPFPTISNLSHHPHLLFFSTHFSFPILSTSTILSIFALLIFLCTSSTKSNKSQQGKTT 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           FVSKMNSNISSRAISMAK+ISWRKVEAA   +E EEERGSG CD  + ++EEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKIISWRKVEAA---DELEEERGSGSCD--ELEDEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 146

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: KAG7036703.1 (hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-38
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKS-QQGRN 60
           MA+PFP+ SN  H  HL F S      ++++  +LSIFAL+IFLCTSSRKS K     + 
Sbjct: 1   MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPILLQQR 60

Query: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTI 120
           NFV+K+NSNISSRAIS+AKMISWRKVEAA   +E+E   G GG D    D ++EVWRKTI
Sbjct: 61  NFVAKVNSNISSRAISIAKMISWRKVEAA---DEDEGGGGGGGFDLSGDDYDDEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           IRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 143

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: KAG6607004.1 (hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKS-QQGRN 60
           MA+PFP+ SN  H  HL F S      ++++  +LSIFAL+IFLCTSSRKS K     + 
Sbjct: 1   MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPILLQQR 60

Query: 61  NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTI 120
           NFV+K+NSNISSRAIS+AKMISWRKVEAA +E+E     G GG D    D ++EVWRKTI
Sbjct: 61  NFVAKVNSNISSRAISIAKMISWRKVEAA-DEDEGGGGGGGGGFDLSGDDYDDEVWRKTI 120

Query: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           IRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 145

[Close]

BLAST of CsaV3_3G021650 vs. NCBI nr
Match: XP_038906595.1 (uncharacterized protein LOC120092546 [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35
Identity = 102/138 (73.91%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLH---LLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQG 60
           MAR FP+ISN SH  H   L F ST+FSFLI S+  +LSIFAL++FLCTSSRKSNKSQQ 
Sbjct: 1   MARLFPSISNPSHHHHHHLLPFSSTNFSFLI-SSIAVLSIFALVVFLCTSSRKSNKSQQ- 60

Query: 61  RNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDE-EEEVWR 120
           R NFVSKMNSNISSRAISMAKMISWRKVEAA +EE+EEE RGS      D++E EEEVWR
Sbjct: 61  RRNFVSKMNSNISSRAISMAKMISWRKVEAA-DEEDEEERRGSCNLSGDDEEEDEEEVWR 120

Query: 121 KTIIRGERCRPLEFSGKI 135
           KTIIRGERCRPLEFS  +
Sbjct: 121 KTIIRGERCRPLEFSDSV 135

[Close]

BLAST of CsaV3_3G021650 vs. ExPASy TrEMBL
Match: A0A0A0L7R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.3e-75
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151

[Close]

BLAST of CsaV3_3G021650 vs. ExPASy TrEMBL
Match: A0A5D3DFS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold712G00010 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.6e-59
Identity = 130/151 (86.09%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
           MARPFPTISNLSH  HLLFFSTHFSF ILSTS ILSIFALLIFLCTSS KSNKSQQG+  
Sbjct: 1   MARPFPTISNLSHHPHLLFFSTHFSFPILSTSTILSIFALLIFLCTSSTKSNKSQQGKTT 60

Query: 61  FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
           FVSKMNSNISSRAISMAK+ISWRKVEAA   +E EEERGSG CD  + ++EEEVWRKTII
Sbjct: 61  FVSKMNSNISSRAISMAKIISWRKVEAA---DELEEERGSGSCD--ELEDEEEVWRKTII 120

Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 146

[Close]

BLAST of CsaV3_3G021650 vs. ExPASy TrEMBL
Match: A0A5A7V4T5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00580 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.2e-30
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 65  MNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGER 124
           MNSNISSRAISMAK+ISWRKVEAA   +E EEERGSG CD  + ++EEEVWRKTIIRGER
Sbjct: 1   MNSNISSRAISMAKIISWRKVEAA---DELEEERGSGSCD--ELEDEEEVWRKTIIRGER 60

Query: 125 CRPLEFSGKIDYDSDGNLLCDSNRDFK 152
           CRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 61  CRPLEFSGKIDYDSDGNLLCDSNRDFK 82

[Close]

BLAST of CsaV3_3G021650 vs. ExPASy TrEMBL
Match: A0A5E4G755 (PREDICTED: LOC100277003 OS=Prunus dulcis OX=3755 GN=ALMOND_2B003044 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 0


Query: 1   MARPF-PTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN 60
           MARP  P+ S  SH  HL    +HF F ++   V  S+F+L+IFLC +SRKS KS + + 
Sbjct: 1   MARPLAPSFSMASH--HLFQHQSHFLFALI---VFFSMFSLVIFLC-ASRKSKKSHKKKE 60

Query: 61  -----------NFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDK 120
                       F++K+NS ISS+A++MAKM+SWRK+EA EE+++++++         D 
Sbjct: 61  EAITNSESKDAKFIAKLNSKISSKALAMAKMVSWRKMEAGEEDQKDDDD---------DD 120

Query: 121 DEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 147
             +E VWRK+II GERC PL FSGKIDYDSDGNL  +S
Sbjct: 121 HSDEAVWRKSIIMGERCAPLNFSGKIDYDSDGNLQPES 143

[Close]

BLAST of CsaV3_3G021650 vs. ExPASy TrEMBL
Match: A0A6J5WQZ0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21513 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.5e-22
Identity = 79/177 (44.63%), Postives = 107/177 (60.45%), Query Frame = 0


Query: 1   MARPF-PTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTS--SRKSNK---- 60
           MARP  P+ S  SH  HL    +HF F   +  VI S+F+LLIFLC S  S+KSN+    
Sbjct: 1   MARPLAPSFSMASH--HLFQHPSHFLF---APIVIFSMFSLLIFLCASHKSKKSNEKKEE 60

Query: 61  ----SQQGRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERG---------- 120
               S+     F++K+NS ISS+A++MAKM+SWRK+EA EE+++++++            
Sbjct: 61  AITNSESKDAKFIAKLNSKISSKALAMAKMVSWRKMEAGEEDQKDDDDDDHSDEAVWRKS 120

Query: 121 ----------SGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 147
                     +   D  D D +E VWRK+II GERC PL FSGKIDYDS+GNLL +S
Sbjct: 121 IIMGERCTPLNDDDDDDDDDRDEAVWRKSIIMGERCAPLNFSGKIDYDSEGNLLPES 172

[Close]

BLAST of CsaV3_3G021650 vs. TAIR 10
Match: AT1G49000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 7.9e-05
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 109 DEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLL 144
           +EE  +W++ I+ G +C PL+FSG I YDS+G LL
Sbjct: 102 EEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLL 136

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021650 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57848.1	1.5e-74	100.00	hypothetical protein Csa_010872 [Cucumis sativus]	[more]
TYK22452.1	1.2e-58	86.09	hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa]	[more]
KAG7036703.1	3.0e-38	65.13	hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607004.1	1.1e-37	65.13	hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038906595.1	1.1e-35	73.91	uncharacterized protein LOC120092546 [Benincasa hispida]	[more]

BLAST of CsaV3_3G021650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R8	7.3e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1	[more]
A0A5D3DFS8	5.6e-59	86.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V4T5	7.2e-30	85.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5E4G755	1.9e-22	47.47	PREDICTED: LOC100277003 OS=Prunus dulcis OX=3755 GN=ALMOND_2B003044 PE=4 SV=1	[more]
A0A6J5WQZ0	5.5e-22	44.63	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21513 PE=...	[more]

BLAST of CsaV3_3G021650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49000.1	7.9e-05	51.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..105
None	No IPR available	PANTHER	PTHR33237	F2P16.13 PROTEIN-RELATED	coord: 1..146
None	No IPR available	PANTHER	PTHR33237:SF31	PROTEIN, PUTATIVE-RELATED	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G021650.1	CsaV3_3G021650.1	mRNA