CsaV3_3G021070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021070
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 17616354 .. 17616753 (+)
RNA-Seq ExpressionCsaV3_3G021070
SyntenyCsaV3_3G021070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAATGCATAACCCTAATCCTCATCATCGGTGAAGACAGAAACTCGAAATCCAACCACTTACCTCCAACCATACCTTGCTCGAACATCCCAAATGCAGTGGGTGATAGTATCCGTAGTGTAGAATGTGTCCAAATCGGAGGGAAAAAAATTACCCGATCGGCAAGTGGGAGTCCAAGCGACAAGGTCTTCTGGAAGGGGAAAACTGAGTCGGATTGCATGTTCACCAATAACAGTGGTGAACATGCAAGCGCAAAGGTTTCAGAGGCAAAATGTAAAACACAGCCATTCAACGAAACCGACAGAAGACCCATTTGTTTCGGAGGCAACACGGTGAGCGAAGCCTTCAACGAAAATTGGAAGGACGAAGAGTGGGAGAGAAAGGAATTTAGAGGAAGATAG

mRNA sequence

CAATGCATAACCCTAATCCTCATCATCGGTGAAGACAGAAACTCGAAATCCAACCACTTACCTCCAACCATACCTTGCTCGAACATCCCAAATGCAGTGGGTGATAGTATCCGTAGTGTAGAATGTGTCCAAATCGGAGGGAAAAAAATTACCCGATCGGCAAGTGGGAGTCCAAGCGACAAGGTCTTCTGGAAGGGGAAAACTGAGTCGGATTGCATGTTCACCAATAACAGTGGTGAACATGCAAGCGCAAAGGTTTCAGAGGCAAAATGTAAAACACAGCCATTCAACGAAACCGACAGAAGACCCATTTGTTTCGGAGGCAACACGGTGAGCGAAGCCTTCAACGAAAATTGGAAGGACGAAGAGTGGGAGAGAAAGGAATTTAGAGGAAGATA

Coding sequence (CDS)

CAATGCATAACCCTAATCCTCATCATCGGTGAAGACAGAAACTCGAAATCCAACCACTTACCTCCAACCATACCTTGCTCGAACATCCCAAATGCAGTGGGTGATAGTATCCGTAGTGTAGAATGTGTCCAAATCGGAGGGAAAAAAATTACCCGATCGGCAAGTGGGAGTCCAAGCGACAAGGTCTTCTGGAAGGGGAAAACTGAGTCGGATTGCATGTTCACCAATAACAGTGGTGAACATGCAAGCGCAAAGGTTTCAGAGGCAAAATGTAAAACACAGCCATTCAACGAAACCGACAGAAGACCCATTTGTTTCGGAGGCAACACGGTGAGCGAAGCCTTCAACGAAAATTGGAAGGACGAAGAGTGGGAGAGAAAGGAATTTAGAGGAAGATA

Protein sequence

QCITLILIIGEDRNSKSNHLPPTIPCSNIPNAVGDSIRSVECVQIGGKKITRSASGSPSDKVFWKGKTESDCMFTNNSGEHASAKVSEAKCKTQPFNETDRRPICFGGNTVSEAFNENWKDEEWERKEFRGRX
Homology
[Close]
BLAST of CsaV3_3G021070 vs. NCBI nr
Match: KAE8650599.1 (hypothetical protein Csa_023711, partial [Cucumis sativus])

HSP 1 Score: 277.7 bits (709), Expect = 5.2e-71
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   QCITLILIIGEDRNSKSNHLPPTIPCSNIPNAVGDSIRSVECVQIGGKKITRSASGSPSD 60
           QCITLILIIGEDRNSKSNHLPPTIPCSNIPNAVGDSIRSVECVQIGGKKITRSASGSPSD
Sbjct: 1   QCITLILIIGEDRNSKSNHLPPTIPCSNIPNAVGDSIRSVECVQIGGKKITRSASGSPSD 60

Query: 61  KVFWKGKTESDCMFTNNSGEHASAKVSEAKCKTQPFNETDRRPICFGGNTVSEAFNENWK 120
           KVFWKGKTESDCMFTNNSGEHASAKVSEAKCKTQPFNETDRRPICFGGNTVSEAFNENWK
Sbjct: 61  KVFWKGKTESDCMFTNNSGEHASAKVSEAKCKTQPFNETDRRPICFGGNTVSEAFNENWK 120

Query: 121 DEEWERKEFRGR 133
           DEEWERKEFRGR
Sbjct: 121 DEEWERKEFRGR 132

[Close]
BLAST of CsaV3_3G021070 vs. NCBI nr
Match: KAE8649434.1 (hypothetical protein Csa_021639 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-23
Identity = 55/71 (77.46%), Postives = 59/71 (83.10%), Query Frame = 0 

Query: 47  GKKITRSASGSPSDKVFWKGKTESDCMFTNNSGEHASAKVSEAKCKTQPFNETDRRPICF 106
           GKK+     G  +DKVFWKGKTESDCMFTNNSGEHASAKVSEAKCKTQPFNETDRRPICF
Sbjct: 6   GKKLPDRQVGVQADKVFWKGKTESDCMFTNNSGEHASAKVSEAKCKTQPFNETDRRPICF 65

Query: 107 GGNTVSEAFNE 118
           GGNT    + +
Sbjct: 66  GGNTFQSTYGK 76

[Close]
BLAST of CsaV3_3G021070 vs. NCBI nr
Match: KAE8647066.1 (hypothetical protein Csa_022948, partial [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 5.5e-12
Identity = 44/64 (68.75%), Postives = 47/64 (73.44%), Query Frame = 0 

Query: 51  TRSASGSPSDKVFWKGKTESDCMFTNNSGEHASAKVSEAKCKTQPFNETDRRPICFGGNT 110
           TRSASGSPS KV WKGKTESDCMFTNN  EHASAKVSEAKCKT+    T+   +      
Sbjct: 10  TRSASGSPSGKVLWKGKTESDCMFTNNV-EHASAKVSEAKCKTRSTKSTENSFVSDENPF 69

Query: 111 VSEA 115
           VSEA
Sbjct: 70  VSEA 72

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650599.15.2e-71100.00hypothetical protein Csa_023711, partial [Cucumis sativus][more]
KAE8649434.11.4e-2377.46hypothetical protein Csa_021639 [Cucumis sativus][more]
KAE8647066.15.5e-1268.75hypothetical protein Csa_022948, partial [Cucumis sativus][more]
BLAST of CsaV3_3G021070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G021070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021070.1CsaV3_3G021070.1mRNA