CsaV3_3G020960 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G020960
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	THO complex subunit 4D
Location	chr3: 17389557 .. 17402833 (+)
RNA-Seq Expression	CsaV3_3G020960
Synteny	CsaV3_3G020960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACCCAAAACACATATTATAATATCATATACTATAACAATTGTACCCGAAACATAGACTATAATAATTTGCACTCGAAATATAGACTATTATAATACCTATACTATTATAATCTCCATCCTTGCTCCAAACGCTTCCTTACGAATTAAAATGACTAATTTAAAATAGGAGAGACAAAGAGTTGTTAGTTAAAATTCAGATACTTTTCCCTTATTTATGTTTGGGTTTATGCAAGAAAACTCTTCTAACATATACATATATGCATACATGATTGAAGGGCAATTATAAGGTATTATTTATAGGTAAAACATTTAAAATAGATTATATTTATAAAATCAGGAAAATAAGGTTAAATTTCAATAACTTATGAACAAAATGGACTATTTTTGTTTACGATGTAAGAACAAAAGGTTGCAATAACAAAAGGGAAGAACTCATCTTCTTAGTCCCGAAGGAAAAGTCTCTCTCAGGTCGCCGCCGCCGCCTCCCGCCGGAAGAATCTCAGCATCTCTCTTCGACGCCCTAAAATTCCAACACCCACGATCATTTTCCATCCTTGTCCCTTCGGAATCCTCTCTTTCATCCTGTTAAACTTTCTATCTTCGCTCTCTCGGAAGTCCTTCGACTTTTTCAAGGGATAATCTTCAGGTAACTTCTTCTCATCTCTTTCTTTCCTTTTTGCAAACTCTGGTTATCATGTGAATATGTTTTATCCTTATTCTGTTAGGTTATTTTATCAATCCGAGTTTTTAATGATATTTTTGTTTTGTTTTTTGAGAAGATGCGATCGCTATTATCTCTTTTGTTATACTTGTAAGAATATGGTTGTTATTCTGTGATTGTAGATCTTAAAGTGTTTTCGAAGTTGAAATTGAGCGAGGACGTTTGGCTCTTTTGCGTAATGAATTATTGTTGTTTTTTTGCATAAAATGTTCATTAAATATCTATCGTTCTATTTGTTTGTTTGTTTGTCTTTTCTTTTTAAACTTTCTTTCTAGTATCAGTTACATTCTTGTACATATATTTTTTCCTTATAACAACTGGTGGTAGGTGTAGATATCATTTTCAATCCTTGGATGCTTATTTTCTTTTTTCTCATGCGTATATTTCCTGCTTCTGGGTTTCTGATCTGAAAACTGACTATCTTGAGTGCCTTTATTGTAATCTCATTGACTTTGGAATCAAATATATTGTATATGGGCATGGATGCTGGAGTTGGAGCAGCCATGGACGTGCGTTTTCTTTTTTAAAAACTTTTATTTAAAAAATCTGCTTACGACTGTACTTTTTTTGATCGCATGACTTCCAGAGCCTAAGGTTTTGCGAGGTCGAGGATAATCTTAAACAACATAAGAAACTATAATTACATTTGTTTTATTCTTCAACTCGTTTATCATCAAAACTATATTGTTTTCTTTTAATTATAAAATCATCACTATGGTCCACGTAAAAGAATCTTTAAGGTCATGGTGGAGTTTATTTGGGAAAGGAAAAGACCTATAAGCTTAGGATGGGGTTGTTCGACGGAATAGTTTTATTTATTTATGGTCGTTTCGAAAGCTTCAGGTGAACCAAAGTGTAACAAACTTGGGGAAGAAAAAACAGTTGTTTATTTACTTTTATAAAATCAAGTTACATAAAATGTAAATCTTTGGTTAATGCATATGTATTTGATATCGCTAATCAATAATCATACAATGAGACGAAGAAAATAATGGATAACGTACAAAAGACAAACAGTGATTGAATAATTTAATTCTTTTAACTACAAGGAGCCCAAAATATCATAAAAACAATCTTCATATTACACTTTAGAGGTCCAAGAAATAACTAAATATGACTTTTTCTTTGTTTTACTCCATTAGTGTACCCATAGTCCCCTCTACTTTAGCCTATTTTCATAGTTGTGATCTGTAAATTAAGATGAAGTTTTATTTATTGTCTTTGATAATCATTATGCTATGTAATCATTTTTTGAAAAAATAAATTCAGGCTTGTACCTCACAATGTCTTGATGTTTATGCTGGTTTGCTATTACTTTTGCCTACACTGGTGTTATGAAGCACATTAGTTGGACTGTAGTGGGGACATGAGTTTGTGTATTGTTGAAAATGGATGTTGAATAGGATGGGTGGTAGGTCATTGTCAACCAATATTGGATATATATTACAGTTGAATACATCTAATAAAGTATTGGTTTACCAAGTTTCAAGGAATTCGTTATTGTAAAAAAAAAAAATCAAGTTTCCTGCAAGTATCACGATTAATGTTTTTCTTACCATTCTGCAGGACTTCTTTTCTATAATTCCTTGAAATCTGTTTCCTCCTACCACATCGATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGACAACCTGATATTCCTTGAAAATTCATGCTCATGGGGATCTCAAATAACAACACTATAGTAACTCTTAACAGAAGTGGATCAGTAAAATTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCCGAATTGTCTTCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATGCGTGTGGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGGGTGGAGAATTATATTCTTGTCGATTTATAAGCTGATATGTGTTTTCCCCATCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTAACCAAAGAAGATATAAAGGTACAACTCAAGCCATATATATTTGACTAAAGATGCTTTCTCTTCATTTTTTTTTTTTATTATTATTCACTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGTAAGTTTCGCCCCTGTCTCTATAAAATTATGCAGTAATGTGTTGCTCTTTGAATTTCTTTAGAATCAAGTATCAATATTGTTTTGGTAGCCACAACTGTGTTCATTGAATCAATATTTCCTTTTGGTGGATTTTAATTTATCTGTATTCAGTACTGAATCTTTGCTTTAGAAGTTGGATAGTGCTAGAAAAAACTATTATAAGGAACTTTTGACTAGAGTACATGTAACAACTTTGAGTTAATGATAAATTATATCTATTGCATGTTTTTATATAATCTCTCTAATGGTTTACTATTCTATTTCATGAAGAAAATTACACTCCAAGTCTCCAATGTAATTAATTGATTATTAGTAACATGTGGTGCAAAAGACTCCTATAAAGTATCAATGGATTAGAATAGACGCAATCTTATTTCGAGTGAAAAAATATGTTGTATTTTTTAGTTAACTAACTTATGCCAGCTAGGCTCAACAGGTTTCATTTTTAATAAGTTCGAATGTAACTAATTTAATACGTTCAGTTCATTTTAGTCTAGATATCTCAAAACTTGTTACTCCAATCCAATCTATTAAGGTTTTCAAGGTTGAGTTTTTTTTCTCCTTTTTTAAGGACTCAACCTATTTGCAAACCAATATATAAGCTTGTGATTTCACTTTTGTATGTGGTGGTATAGTCTCATTCTTTGGTGCCAATGGTTCCTTGACCATGTATTCCCTAATTCTCGCTCGTCTTCATTGCCTTTGCTTATCATTGTTATTCATATTTGGCTTCTTTAAGTTAGCATGAGATTTGTACGAAAATATGATAGTTATCGCATTTCTATTTTAGATATGTATATAAAGGTTAGCTCCCTTATCAAGCTTTAGTTGGCTGATAAACTTCCTATTATTTATTGAAGGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTATGTAGTATTCTAGTTACTTTTTCTCTTTCATTTTGCCCCTTTTCGTATTTAATTTTAACATCTTTATAGGTAATTATTGTGTGCTGGAAGTAGAAAGTTTCTGCACATTATTCTATTTCATGGTCATTTTGGGGTGTTTAGGGGCCTCAACTTCAAGTTGGTGGAGTGGGTTATTATAATCCACACCATGTGTGGGGCTCCAATTATAATAGTTGGTATTTTGAACTATAACCTATAATTGTCAATATTACTTTTTCAAATCTTTTTTTACTACAATGTTTACTGTGTTTACCTTTCCAAAGGTGAGTGGTGCTGCGAGTGGGGTTAGTGCGCCTGTTGTGCTGTCTAGGTGCCTCTTCAAAGAGGTGATTGACCAGCGACACCTTGTTGCACCTTCGTTGATGAAGAAGGCTAGTGCCTCTTCCAATATCTGTGTTTTCTTTCTTTTTTTATTTAATTGATCAACAACCCATGAAATCGATTACTCAACCTTTTGAATTTGGCCGCTTCCTTCTACTTCGCTTTGGTTTCTTCCTTTTAAACTCTTTGATATCATATTCTTTCCTGAATGACAACCCAACTCTCTCTACTCCTTCACGATTTTGCTTATTCTCTTTGAAAGGCGCCACTTGCAAAAAATTTCATTGTTTCCTTGAGGTTTGAAGTTCCTCATCAATCCTGTCATCTTGCTTTTTATGATTGCTCCTTGTGGGTTTTGATTTTGGGTTTCAATTGTGGGTTTCGATTGATTCAAGTTCTGCGTTTTATGTAAAGGTATATTAATATTATATGTTGTATAATATTATATTTTTTCTGTTGATTTCTTTAACCTTGAGCAAAATTTTAAATAAAATACCAGACAGTTAGTGAGGTTGGATTATGAATTCTTGAGCCATAAAATCTGTATTATGTTATTATTGTTTTACTATATATTTTTATATTCATTTTTAGTGGGTGGGTTGAAATATTTCTTTTGGCGCCTTGCATTGTTTTCTAATAATAAGTCATAATTATCTTAATATTTGCATGTTACAATCTTAAATATTTAGCAGAGTGAGGTGTGAAATATTATCTTAATTTTCTTTTCAACAAGTTGATCTTATAATTTATATGTGATTATATAAAATTTGATTCTTTACAATTTATTATTAGTTATTAATAGAAGATGTAACGAGACTTATATTTGCCTCATCCCCAAAAAGAAAGAGGCAGGTCGTGTCAGTGACTTCAGACCAATTAGCTTGATTACCTCCTTGTATAAAATTATCTCCAAAGTGCTTGCTTCAAGGCTTAAAAAAGTTCTTCCATCGATAATTAATGACTCTCAAATGGCTTTTGTGGAGGGAAGGCAAATCCTTGATGCTATTTTAACTGCTTCTGAGGCTGTTGACGAATGGTCTTTAAGAGGCAGAAAAGGCGTGCTTTTGAAGCTCGACCTGGAGAAAGCTTATGATAAGGTGGATTGGTCTTTTCTTGATATGATCATGAAACTTAAAGGCTTTGGTCAGAGATGGAGGAAATGGATTTGGAGATGCTTGTCGACAACTAATTCTCCATCATTATCAACGGGAGGCCTAGAGGGAAGATTATTGCTAAAAGGGGCATTCGACAAGGTGATCCTCTTGCTCCTTTTCTTTTTACGATTGTGGGAGATGCTCTAAGCTGCCTTATCCACTACTGTAATGAGAAAAGGAGTTTTAAAAGGCTTTCATTTTGAGAACCTGTCAGAGGAGTTAACTCATCTTCAGTACGCAGACGACACGCTTCTTTTTTCTTCCTGGGAGGATGGAAATCTGGAGAACTGGTGGAAGGTGGTTAATATCTTCCTTATGGGAGCCGGTCTTTCCCTCAATAGAGCTAAAACCTCCCTGATCGGTATTAACCTTAGCAATGATGACTTAGCTCCTTTTAGTGAATCTACGGGATGCTCGGTTGAGAATCTTCCCTTTAAATATTTGGGCTTCTCTATTGGAAGGGGTCATAATAGAAAAGAGATGTGGAACAATCTTGAAGAGAGATTCAGACACAAACTTGATAGGTGGAGGAATGTATCCCTCTCCAAAGGGGGTAGACTAACTCTGGTGCAATCAGTTCTCAATAGCCTCCCTTGTTATCTCTTCTCCCTTGCTCAAGCTCCAGTTGGTGTTATTAATAGATTGGAACAGATGATCAGGAAGTTTGTTTGGACAGGTGGATCTACGAATCCAATTGCTCATCTCGTCAATTGGGAATGCACTTCCACCCCAACTTGTTATGGTGGTCTTGGGATTGGCTCTTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTTGGAGGCTTAGTAAGGAAGAAGCCTCATTATGGAGGCGATTAATTGTGGCTATCTATGGTTTAGAGGAGAATGGGTGGTCTACCAAAGATCCAAACAGGGGAAAATCTCATAGATTATGGGCTGGTATTTTAAAGCATAAGGAGATATTCTTTAATTTTTCAGCTTTTGTTTTGGGAGAAGGAACAAAAATCAAGTTTTGGAAGGATAAATGGTGTGTTGCGGAAACACTTGCAGAAAAATTCCCTAACTTATTCTCTTTGGCGCTGAATAAGGATGCTTATGTGGCTGAATGCTGGTGTACTGCTACTCATTCTTGGAATTTGGGCCCTAGAAGAAATATGCTCGACAACGAGATTGCCAATGCAGCCTCAGCTTTAGAAATTCTTCATTCTTGGGCCCCCAATGAAAGGAATGATAGTCTTAAATGGACTTCTAACATGAATGGCAACTTCACTACAAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGCTGTTCCCTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGAGAAACTACAAAAAAAAATTCAGAACACATTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACCTTGGATCATTTATTTCTACATTGTCCCTTCACAAAAAAAGCTTGGAACACTCTGTTTGGTATTTTTGACTTGGAGCTTTGCCTTCCTAGCAAGATTGATAGCTGGATGATTGAAGGTCTTAACATTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGTGCGACGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACATAGCCTCATAGCCTCTTGGTGGAGTACGAATTACACCAAACACTTTTGTAATTATAGCCTTTCTATGATTTTAAACAACTGGATGGCCATTATGTCTTAGTTTCCTAGCTTCTTCCGGGGAGGGCCCTCTTGTCCCTCGCCCTTAGCATGTTCTGTTTTGTTATATGAATATACTTGTCTCTTATCAAAAAAAAAAAAAAAAAATCTTTGAGGCTTTTACATATGAATATAAACGTATGTTTTACATATATCATTTATTTATTGTGCTTGCTACGCTCATGCGTCGCTTTTTTGTCACCTTGAGGCGATCAAAGGACTTGTCACCCTGAGTTGCACCTTACGCTTTGAAAACACCGATAAAAACACCCATTTAGATATTCATTTCCCAAGTATTTTTCTTGAGTCTTGCAAAAAGGAAGCTTCTGTTGCTGATTGCTGGGATGGAAAATCAGACTTGGACCTTGGGCTTGAGAAAAGGCCTTTCTGATAGAGAATTAACCTGCAAGGTGACTCTTGTTGCGATGTTTTGTTTAGTAGGGGGAAGTCTCTTCAGTAGCATTATTTGGTCTCTTGAAAAGTCTGTTCTTACTCGTTTAAGTCTGCCTTTGTGAACCTTGATTACATGCGCAGTAGTACAAACTCAGCTTTGATCAGCCTATCTGGAAACTTAGCAAGCTGTAGAAAGTAGAAGTTTTCCTTTGGTCTTCAGCATATAGAAGGATAAAAAAGCTTTTTTTGCTTGGATAGGAAGGCCACTAGAAGAATTTTTTATAAACTAATAGAAGTTGAAAAATTTGTAGTGAAGGTGCTCACACTATCAACGGGCCTCTAAAATTTTAAAACTTCTCAAATGCACTTATATAAACTACTTAGTTTAATTAACAGTACCATCAGAAAAACCCAACATGTTGGACCTCTTTTGGTAACTAACCCCCATAACAATCCAACATGTTTTGAGGATGTATTGAGTTTGAACATGAATTGTCAGAAGTTGGAATTCTTGGGATCGAACTTGATCCGTATGTTTGCTTCATTAGTGATGAATTTGGATTGCAAGTTTGGTGATTGGCCACTTAATGGTGAGTGTAAATCCTTGTCATTTTTTCGTTTCCATCATTTAAAAAATTTAGGAAAGCCTCTTCTCATGCATCTCTAACGGTGGTTGATAGATTCTCATTCAAGCTACATCGTTCTAACCTTCCCATCAACTTTGTGGATGAGCAACAATTAAAGGGGTTGGTTGCAATCTTAGATGGATGAGGTAAGTTAACTTCTGAAGGAGTTTTTAAGTATTGTTAACCTAAAATGGAATAATTTAGCCAGCATTCTCATTCAAGGAACATTGTTCCGACCTTCCCATCAACTTTGTGGATAAGCAACAACTAAAGGGGTTCTTAATCTTAGATGGGGATGAAGTAAGTTAACTTTGGAAGGAGGTTTACGGATTGTTAACCTAAAATGGAATAATTTATCCTTGCTGGCTAAATGGATTTGGAGATTTTATAAAGAGAAATCCACCCTGTTCAGGCAAGTTATTGATTCAGTCATCACTTGCAAAGTTGGTGATGTTATTATTGTTATTTTTTTTATGTTCGTAAGTGTCCAGGTCAGCTTACGTGCACCTTGACTAATTTCAAGACAATCTGCCTGATCCTCAAGGTCGGTAATGTTAAGACACTCCTGATTTATGGATTTGTATTGAGGCTCTGAAATATATCTTTCCTTGCTTACTATTACACAGGGTTGATTGTCTTGTAGCTGAAATGTGGAATGAACCTTTGGCATTTTGGGATTTCTTACCTAGGAGAGATTTGACGTAAGGAGAAACTGGGATTGGGCCAGCCTTCATAAGCTCTCGTCAGTTGGTGTGAATCTCACAATGAATCCTTTGACATATGGTGCTGGAATTTAGAGATGGATCGGTTTCTTTTTTTCCTTCTCAAAATCTCTTTCCAAGTTGTTAGCTTTGATTAGACAATTGGGCCGTAAAGATCTATCTAAGCATTTAGAAAGAATTATACCACCAAAGGATGAAGTTCTTTATAGGAAAGTCAAGTCACTCATGTTTTAATATTTACAACAACCTTCAAATGCAATCTCCTTGGATATCCATCTCTTCTAACTGCTGCATTTTGTGCAAAGTCGTAGGGGATTTGTTTAGTCATCTCTTATTTTGGTGCAAACAAGCCAAAATCTTTCGAACTTCATTTGTCAAAAGTTTACGTGGCAGATTTCCTTTTATTTTGACGTTGGGACATTCTCCCTCTTGTTAGACTTCTTCAAGAAAGAGAAGAAGATTCTTTGTCTAAACGTTGTTTGAGATCTCTTGTGATCTGGTTGGAGTGCAATTCTAGTACCTTCATAGATAGGGAACAAGACCTCCCATCTTTTTTAACATCTTTTAAGTACTTATCCTTTAATAGGTGTAAATTGATCCCAAATTTGACTATTTGTAAATATAGTTTATCAAATCTCATGATTGGAGATGTTTCTTTGGTAATCTATTGGATATGATCTCACCTTTTGTAATTTCATCTAGTCAATGCTATTGTTTCCGTTCAAATGAAAACCAACATGTTTTGAAATACCAATAGAAGAACTTAAATCAACCGCTCTTGGGGGAAGAGCATCCAACTTTGAGTGGTTTTCTGTCTTTAGAGTTTTGATAATGGGGAAAGGCCTCATTGAGATCACCTTGGAGATAATACTAACCGTTGACAGAAAACAGTATTTGGGAGTATTCCAAATAGTGTTAGTTAAAGACAAAATAGTTTAGTAATTTTTGAGTTTTGACCATTTGTAATATGATCTCTACCGATCATCATGGGTTGACCTAGTGGTTAAAATGGAGACGAGACGGTCTCTATAAATGGATAAGAGGTCATGGGTTCAATCCGTACCTAGGCATTAATATCTTATGAGTTTACTTGACACCAAAATGTTGTAATGTGTTTTGTGAGATTATTCGAAGTGCTCGTATATTGACCTAGACATTCATGGATATAAAAAGAAATGTATTTTTAGTTTAATGTTTAACACTTCAAAAATATGTAATAAACACCTCTTTTCTTCTAGATTGTACTTTTACTTCCATGATATGTAAAATCCCTGCAAAGAAGTTTCATTGCGAGTATCTTTCTAATACCCACTTCCAATGTAATGTAACTATACTAGACGCACAAATTCTTGCTACTGCCCTAAACTAGCATTTGCTGATTGCAGTTAGTTACTTCTTAAAATACATTTTCTGAAGATTTATTTTAGTTCCCAAAATGCATTGGACAGCTTTTCTTGCTTTTAACTTGGAGTGAACTTTCTCTACCTCTTCGTAGCTATTAGATGCAACTACAGCATACCAATCCTCATGTCACATTGGAGGAAATTCTTGTAGTTACAGTCACATATAAGAATTCTCTTGTAACCTACTTCATCAATCAATGAACAGAATTCTTGGGGACGTGAGGTTTAATGTTTCAGTTATTAGGGTATCAGTTGCAAGACCATTTTGTAATTATGATATCAAACTATTTCTTTTGGACTGGAGTCCCTTCTATAGTTAATGTTGAGCTCTTGTCTTCTGGGCCGTATGTTTGTTTGCCCTTGTACTCTTTCATTTTTTCAATGGAAATTGGTCTTAAAAGAAAAAGGAAGAAAAAAGGAACAAAGGGAAAAAGTTACATATTGTTTAGATTTGTTAAAATTTTCATGCTGTCCTTTGGAAATTGTACTTCTAACATGTTTGATGAAAAGAAACATAATCTGCTTTGATTAGTAATATTAAGATTTGTTGGGTATATGCAGGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGGTAAGTTCTAACTAGACATTGCTTTTGGCATGAGATTTTTATATTCAATAGCAGAGTAGCTGGGTTTTATTATTACTATTATTATTTTGTTCTGGGATTGTTTTACTGCCTGATAGTTGGATTGGTTTTGAAGTCATTTGTTCTTGGTTACTCATATCTTTGATTTTCATAGGGGTGTTAGAATTGGGAGTTATATTTTCTCTACCTGTTTGGAAGTGTGGGAAACAAGCTACTGAAATATTACCACCTTTTTGCTTTCCTTTTCTAATTTTTTTTTATGATTGAAAATTATTTGGTATGATAATATTTAATACATTTTTTAGAATAAGAAAATAGAACTGATAACAAATGTTTCGCAATACTTTTGTGTTTGTTTCCTAAATTTTTATGAATCAACTCTTTAAATATGCCCCAATTATTTTTGAAAATTAATATGAGGAAAAGATATGAAAATTAAAAAACAGAACTTTTCTTCTAGTTTTCTGTAAGGTCAAATTTACGTTCAGTCTTAACTTTTTTGTTTTTGTTACTAAATTTTAAAAAGTGTCTCATAAGTCTTTTTTATTATTATTTTTCTATTAATGAGAAACAAGAACGTAACCTATAGGCCTATGGGATGAGAGGTCCCTAAGCCTTAATTGTTCTCTAATGTGTATTTTAAGAAGAATTGTGCAAAGTTCTCCACGTGGAGGCCATAAGTTGTACGTTTTCATCAAGTGTCAGTAAGTCCTTATCTTTCAACTATTGTGTATAATAAGTTGTTGACTTATTCAATATTTTCTTTAAAATTCATGGATCTACTAGAATACAAAATTGAAGGTTTTGGGTTCAAATTCAACTTTATATCTAATTGAACATAAACTTTCTTCAAAAATTGATTATTCTAGGCACTTGTTTGACATAAAATTGTTGGAAGTTCAAAGAAAGCAATCAGTGTGTAGGATATTCGATCTCTTGGAACTGGATGAGTTTGAGGCCATTCTTGATAGTAGTCACTGAAAGTATCCTTTGAAAGGTTTTGAAAAGTGTAGGTTAAGTGGGAAATGAAGTGAGATGAATCAACTTTGGTTGTTCTTATTACTGTATGGGTTTATTGAAACTTTTGTGTTTTGTATAGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGAGGAGAGGAACCTTGGTCGAATGTGCAAAAGTTGAAGTATGATCCGATTAACTTGTGTTAGTAACAATATATATTGCATTCTCGGGTGATTATTTTGTTATTATTAGTTTACATGTTTATTTTATTTTATTTTTTTTTACTTCGGTAGACTAGATATGTATTTTGCCTGTTAAATGTTAATGGAGATGATAATACTGTTCGACCCTCTATTATCAAAACTATCTTTTTGGTTGATCCTGAATGAATCGAGCTTGGGATCATCAATCTCTCGAATAGGTAAAAAATTTCTTTATGTATAAAAGGATTAAGTTGTTTCTTTTGAACTTCCCCTTCTCTTTTATTTCCTTCTTGTCTCCTATCGAACAAAGATGTTGCAAACTTCTTAATCAGGTTCATATATTTTTGGCTGATTGAAGTTTATATTTTGCTTTATTGCTGGACTGCAATTTGATCAGTTGAATTGATTGTTTCATTTGAACTATTGACATTGTGGTATCAACTTTATCAAAATTTTACCAATATATGGAGGATGTTTGTCTTAGTGTAAACTTAGGAAACACTAATTCGATGC

mRNA sequence

ATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTAACCAAAGAAGATATAAAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Coding sequence (CDS)

ATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTAACCAAAGAAGATATAAAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Protein sequence

MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARASAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT*

Homology

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_004145851.1 (THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_011773 [Cucumis sativus])

HSP 1 Score: 547.4 bits (1409), Expect = 7.6e-152
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240
           SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG
Sbjct: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240

Query: 241 LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 286

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_008457020.1 (PREDICTED: THO complex subunit 4D [Cucumis melo])

HSP 1 Score: 532.3 bits (1370), Expect = 2.5e-147
Identity = 279/286 (97.55%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240
           SARINVTGTNGRNRRTVVLT ESGRNAT NVVN FPGPSHRGGLRNARGRGRGAW+RGVG
Sbjct: 181 SARINVTGTNGRNRRTVVLTPESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGVG 240

Query: 241 LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           L GGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 L-GGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_038896761.1 (THO complex subunit 4D-like [Benincasa hispida])

HSP 1 Score: 508.4 bits (1308), Expect = 3.9e-140
Identity = 265/286 (92.66%), Postives = 276/286 (96.50%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKK+NREKLRARGRARRGRGAGGSFNGGRGVV+GSVRRGPLGINARAS
Sbjct: 1   MATPLDMSLEDVIKKSNREKLRARGRARRGRGAGGSFNGGRGVVVGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGV+KEDI+ELFSEI
Sbjct: 61  AYSIRKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVSKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDG+PMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGRPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240
           SARINVTG NGR+RRTVVLT ESGR A+SNVVN FPGPSHRGGLRN RGRGRG W+RG G
Sbjct: 181 SARINVTGVNGRSRRTVVLTPESGRTASSNVVNPFPGPSHRGGLRNGRGRGRGGWNRGQG 240

Query: 241 LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           +GGG GGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 VGGG-GGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 483.4 bits (1243), Expect = 1.3e-132
Identity = 260/295 (88.14%), Postives = 270/295 (91.53%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           A+SI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRN--ARGRGRGAWSRG 240
           SARINVTG NGR+RRTVVLTSESGR  +SN VN FPGPSHRGGLR+   RGRGRG WSRG
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGRGGWSRG 240

Query: 241 VGLGGG---SGGGRGRGR----GRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           +G GGG    GGGRGRGR    GRGRGQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 241 LGGGGGRGLGGGGRGRGRGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_022982649.1 (THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subunit 4D-like [Cucurbita maxima] >XP_022982651.1 THO complex subunit 4D-like [Cucurbita maxima])

HSP 1 Score: 483.4 bits (1243), Expect = 1.3e-132
Identity = 260/305 (85.25%), Postives = 270/305 (88.52%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           A+SI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240
           SARINVTG NGR+RRTVVLTSESGR  +SN VN FPGPSHRGGLR+ RGRGRG WSRG+G
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGGWSRGLG 240

Query: 241 LGGGSG---------GGRGRGR----------GRGRGQGRKKPVEKSSDELDKELENYHA 287
            GGG G         GGRGRGR          GRGRGQGRKKPVEKSS ELDKELENYHA
Sbjct: 241 GGGGRGLGGGGGRGLGGRGRGRGRGSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHA 300

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 4.4e-70
Identity = 159/295 (53.90%), Postives = 206/295 (69.83%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSE 120
           S+++I KP  R++++ WQ  LFED LRA+G SG+++GT+L+V+NLD GVT EDI+ELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+V+R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 MPVSAR--INVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGP----SHRGGLRNARGRG 240
            P+S R  +NVTG NGR +RTVV+    G            GP    S R  + N +G G
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

Query: 241 RGAWSRGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
                 G    G   GGRGRG GRG G   KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 241 MRGGRGGFRARGRGNGGRGRGGGRGNG---KKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 4.3e-65
Identity = 159/312 (50.96%), Postives = 212/312 (67.95%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKPPHRMKNVQW--QHDLFEDSLRASGISGIQIGTKLYVSNLDYGV 120
           PL +N R +S++SI K   R +++ W  Q+DL+E++LRA G+SG+++GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDI+EL++EIG++KR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-MPVSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNA 240
           +E+LG N E  PV+AR+NVTG NGR +R+V                 F G   RGG R  
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSV-----------------FIGQGVRGG-RVG 240

Query: 241 RGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGQGR-------KKPVEKSSDEL 285
           RGRG G   R +        G+  G GG RGRGRG G G+G        KKPVEKS+ +L
Sbjct: 241 RGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADL 292

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.5e-46
Identity = 139/308 (45.13%), Postives = 181/308 (58.77%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+  LDMSL+D+I K+NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF--EDSLRAS----------GISGIQIGTKLYVSNLDYGV 120
            YS      +  +  WQ+D+F  + S+ A+          G S I+ GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDIKELFSE+GD+KR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 IEMLGDNAE---MPVSARINVT-GTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGL 240
           IE++G N     +P+ A   +   TNG       +      N   N   +F G       
Sbjct: 181 IEIVGTNLSAPALPILATAQIPFPTNG-------ILGNFNENFNGNFNGNFNG------- 240

Query: 241 RNARGRGRGAW---SRGVGLGGGS-GGGRG-RGRGRGRGQ-GRKKPVEKSSDELDKELEN 287
            N RGRGRG +    RG G GGG+  GGRG RGRG GRG  GR +    S+++LD EL+ 
Sbjct: 241 -NFRGRGRGGFMGRPRGGGFGGGNFRGGRGARGRG-GRGSGGRGRDENVSAEDLDAELDK 291

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.8e-42
Identity = 123/291 (42.27%), Postives = 163/291 (56.01%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+T LDMSL+D+I KN     ++RG A   RG G     G      + R  P   + R++
Sbjct: 1   MSTGLDMSLDDMIAKNR----KSRGGAGPARGTGSGSGPG-----PTRRNNPNRKSTRSA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF----EDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKEL 120
            Y   K P       W HD+F    ED       +GI+ GTKLY+SNLDYGV  EDIKEL
Sbjct: 61  PYQSAKAPES----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKEL 120

Query: 121 FSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 180
           F+E+G++KR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N 
Sbjct: 121 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL 180

Query: 181 EMPVSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWS 240
           +                       + SGR A  N      G   RG      G+GRG   
Sbjct: 181 Q--------------------TAAAPSGRPANGN----SNGAPWRG------GQGRGGQQ 240

Query: 241 RGVGLGGGSGGGRGRGRGRGRGQGRKKPVEK-SSDELDKELENYHAEAMQT 287
           RG G GGG  GG GRGR  G+G     P EK S+++LD +L+ YH+  M+T
Sbjct: 241 RGGGRGGGGRGGGGRGRRPGKG-----PAEKISAEDLDADLDKYHSGDMET 243

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.1e-32
Identity = 111/290 (38.28%), Postives = 160/290 (55.17%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGG----RGVVIGSVRRGPL--- 60
           M   +DMSL+D+IK N  ++  +RG  R GRG GG+  GG     GV  G    GP+   
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRG-GRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNR 60

Query: 61  GINARASAYSIRKPPHRMKNV--QWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKE 120
            + AR    +   P  R K +  +WQHDLF+    A   +G++ G KL VSNLD+GV+  
Sbjct: 61  PVMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAG--AGVETGGKLLVSNLDFGVSDA 120

Query: 121 DIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM 180
           DI+ELF+E G +K+ A+HYD++GR  G+A+V + R++DA  A+K+YN V LDG+PM I++
Sbjct: 121 DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 180

Query: 181 LGDNAEMPVSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRG 240
                   V+++I+   T  R  ++V                      +RGG+     R 
Sbjct: 181 --------VTSQID---TQRRPAQSV----------------------NRGGMT----RN 240

Query: 241 RGAWSRGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHA 282
           RG    G G GG   G RG  RGRGRG GR    + S++ELD +L+ Y+A
Sbjct: 241 RGVLG-GFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEELDAQLDAYNA 249

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy TrEMBL
Match: A0A1S3C452 (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.2e-147
Identity = 279/286 (97.55%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240
           SARINVTGTNGRNRRTVVLT ESGRNAT NVVN FPGPSHRGGLRNARGRGRGAW+RGVG
Sbjct: 181 SARINVTGTNGRNRRTVVLTPESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGVG 240

Query: 241 LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           L GGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 L-GGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy TrEMBL
Match: A0A6J1J564 (THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 6.5e-133
Identity = 260/305 (85.25%), Postives = 270/305 (88.52%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           A+SI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240
           SARINVTG NGR+RRTVVLTSESGR  +SN VN FPGPSHRGGLR+ RGRGRG WSRG+G
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGRGRGRGGWSRGLG 240

Query: 241 LGGGSG---------GGRGRGR----------GRGRGQGRKKPVEKSSDELDKELENYHA 287
            GGG G         GGRGRGR          GRGRGQGRKKPVEKSS ELDKELENYHA
Sbjct: 241 GGGGRGLGGGGGRGLGGRGRGRGRGSGSGSGSGRGRGQGRKKPVEKSSAELDKELENYHA 300

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy TrEMBL
Match: A0A6J1FAB9 (THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 2.5e-132
Identity = 259/295 (87.80%), Postives = 270/295 (91.53%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGS+NGGR VVIGSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           A+SI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRN--ARGRGRGAWSRG 240
           SARINVTG NGR+RRTVVLTSESGR  +S+ VN FPGPSHRGGLR+   RGRGRG WSRG
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSHAVNPFPGPSHRGGLRSGRGRGRGRGGWSRG 240

Query: 241 VGLGGG---SGGGRGRGR----GRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           +G GGG    GGGRGRGR    GRGRGQGRKKPVEKSS ELDKELENYHAEAMQT
Sbjct: 241 LGGGGGRGLGGGGRGRGRGSGSGRGRGQGRKKPVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy TrEMBL
Match: A0A6J1CP51 (THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 3.1e-127
Identity = 251/286 (87.76%), Postives = 262/286 (91.61%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLED+IKKNNREKLRARGRARRGRGAGGSFNGGR VVIGS+RRGPL IN R S
Sbjct: 1   MATPLDMSLEDMIKKNNREKLRARGRARRGRGAGGSFNGGR-VVIGSIRRGPLSINTRPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           A+SI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE+LGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEILGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240
           SARINVTG NGR+RRTVVLTSESGR  +S VVN FPGPS+RG LR  RGRGRG WSRG  
Sbjct: 181 SARINVTGLNGRSRRTVVLTSESGRTDSSTVVNHFPGPSNRGALR-GRGRGRGGWSRG-- 240

Query: 241 LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
             G  GGGRGRGRGRGRG GRKK VEKSSDELDK+LENYHAEAMQT
Sbjct: 241 -QGQVGGGRGRGRGRGRGLGRKKTVEKSSDELDKDLENYHAEAMQT 281

[Close]

BLAST of CsaV3_3G020960 vs. ExPASy TrEMBL
Match: A0A0A0L717 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 6.8e-106
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLT 201
           SARINVTGTNGRNRRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of CsaV3_3G020960 vs. TAIR 10
Match: AT5G37720.2 (ALWAYS EARLY 4 )

HSP 1 Score: 269.2 bits (687), Expect = 3.7e-72
Identity = 159/291 (54.64%), Postives = 206/291 (70.79%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSE 120
           S+++I KP  R++++ WQ  LFED LRA+G SG+++GT+L+V+NLD GVT EDI+ELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+V+R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 MPVSAR--INVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAW 240
            P+S R  +NVTG NGR +RTVV+    GR          P  S R  + N +G G    
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQVRGGRGGRGPA----PTVSRRLPIHNQQGGGMRGG 240

Query: 241 SRGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
             G    G   GGRGRG GRG G   KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 241 RGGFRARGRGNGGRGRGGGRGNG---KKPVEKSAADLDKDLESYHADAMNT 279

[Close]

BLAST of CsaV3_3G020960 vs. TAIR 10
Match: AT5G37720.1 (ALWAYS EARLY 4 )

HSP 1 Score: 266.2 bits (679), Expect = 3.1e-71
Identity = 159/295 (53.90%), Postives = 206/295 (69.83%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSE 120
           S+++I KP  R++++ WQ  LFED LRA+G SG+++GT+L+V+NLD GVT EDI+ELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+V+R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 MPVSAR--INVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGP----SHRGGLRNARGRG 240
            P+S R  +NVTG NGR +RTVV+    G            GP    S R  + N +G G
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

Query: 241 RGAWSRGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
                 G    G   GGRGRG GRG G   KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 241 MRGGRGGFRARGRGNGGRGRGGGRGNG---KKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of CsaV3_3G020960 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.6 bits (636), Expect = 3.0e-66
Identity = 159/312 (50.96%), Postives = 212/312 (67.95%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKPPHRMKNVQW--QHDLFEDSLRASGISGIQIGTKLYVSNLDYGV 120
           PL +N R +S++SI K   R +++ W  Q+DL+E++LRA G+SG+++GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDI+EL++EIG++KR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-MPVSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNA 240
           +E+LG N E  PV+AR+NVTG NGR +R+V                 F G   RGG R  
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSV-----------------FIGQGVRGG-RVG 240

Query: 241 RGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGQGR-------KKPVEKSSDEL 285
           RGRG G   R +        G+  G GG RGRGRG G G+G        KKPVEKS+ +L
Sbjct: 241 RGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADL 292

[Close]

BLAST of CsaV3_3G020960 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.6 bits (636), Expect = 3.0e-66
Identity = 159/312 (50.96%), Postives = 212/312 (67.95%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKPPHRMKNVQW--QHDLFEDSLRASGISGIQIGTKLYVSNLDYGV 120
           PL +N R +S++SI K   R +++ W  Q+DL+E++LRA G+SG+++GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDI+EL++EIG++KR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-MPVSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNA 240
           +E+LG N E  PV+AR+NVTG NGR +R+V                 F G   RGG R  
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSV-----------------FIGQGVRGG-RVG 240

Query: 241 RGRGRGAWSRGV--------GLGGGSGGGRGRGRGRGRGQGR-------KKPVEKSSDEL 285
           RGRG G   R +        G+  G GG RGRGRG G G+G        KKPVEKS+ +L
Sbjct: 241 RGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADL 292

[Close]

BLAST of CsaV3_3G020960 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 186.4 bits (472), Expect = 3.2e-47
Identity = 139/308 (45.13%), Postives = 181/308 (58.77%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+  LDMSL+D+I K+NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF--EDSLRAS----------GISGIQIGTKLYVSNLDYGV 120
            YS      +  +  WQ+D+F  + S+ A+          G S I+ GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDIKELFSE+GD+KR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 IEMLGDNAE---MPVSARINVT-GTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGL 240
           IE++G N     +P+ A   +   TNG       +      N   N   +F G       
Sbjct: 181 IEIVGTNLSAPALPILATAQIPFPTNG-------ILGNFNENFNGNFNGNFNG------- 240

Query: 241 RNARGRGRGAW---SRGVGLGGGS-GGGRG-RGRGRGRGQ-GRKKPVEKSSDELDKELEN 287
            N RGRGRG +    RG G GGG+  GGRG RGRG GRG  GR +    S+++LD EL+ 
Sbjct: 241 -NFRGRGRGGFMGRPRGGGFGGGNFRGGRGARGRG-GRGSGGRGRDENVSAEDLDAELDK 291

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145851.1	7.6e-152	100.00	THO complex subunit 4D [Cucumis sativus] >KAE8650594.1 hypothetical protein Csa_...	[more]
XP_008457020.1	2.5e-147	97.55	PREDICTED: THO complex subunit 4D [Cucumis melo]	[more]
XP_038896761.1	3.9e-140	92.66	THO complex subunit 4D-like [Benincasa hispida]	[more]
XP_023527122.1	1.3e-132	88.14	THO complex subunit 4D [Cucurbita pepo subsp. pepo]	[more]
XP_022982649.1	1.3e-132	85.25	THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subun...	[more]

BLAST of CsaV3_3G020960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ72	4.4e-70	53.90	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
Q94EH8	4.3e-65	50.96	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
Q8L719	4.5e-46	45.13	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q8L773	1.8e-42	42.27	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
B5FXN8	2.1e-32	38.28	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]

BLAST of CsaV3_3G020960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C452	1.2e-147	97.55	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]
A0A6J1J564	6.5e-133	85.25	THO complex subunit 4D-like OS=Cucurbita maxima OX=3661 GN=LOC111481464 PE=4 SV=...	[more]
A0A6J1FAB9	2.5e-132	87.80	THO complex subunit 4D-like OS=Cucurbita moschata OX=3662 GN=LOC111442248 PE=4 S...	[more]
A0A6J1CP51	3.1e-127	87.76	THO complex subunit 4D-like OS=Momordica charantia OX=3673 GN=LOC111013262 PE=4 ...	[more]
A0A0A0L717	6.8e-106	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV...	[more]

BLAST of CsaV3_3G020960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37720.2	3.7e-72	54.64	ALWAYS EARLY 4	[more]
AT5G37720.1	3.1e-71	53.90	ALWAYS EARLY 4	[more]
AT1G66260.1	3.0e-66	50.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	3.0e-66	50.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	3.2e-47	45.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 269..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..35
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4C	coord: 1..286
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..286
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 97..171 e-value: 3.33253E-42 score: 137.771
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 221..286 e-value: 4.2E-11 score: 52.9
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 223..281 e-value: 1.3E-6 score: 28.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..170 e-value: 2.6E-19 score: 80.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..167 e-value: 1.4E-15 score: 56.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 97..174 score: 15.391531
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 94..173 e-value: 4.0E-22 score: 80.2
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 52..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020960.1	CsaV3_3G020960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding