CsaV3_3G020930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020930
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 17315617 .. 17315964 (+)
RNA-Seq ExpressionCsaV3_3G020930
SyntenyCsaV3_3G020930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGAGAGAAAGCAGTTGAGAAATCTGAGAAGAGTGAACTGGAAGTGGTCCGCTCAGACGGTCGTATGTCGGAGCAAGCCCAACCCAGTTTCGTCCAAACCCTACCCAGTTCAAGTGATATTTTTGGTGCAGAGGGCTTCAATCCCTTCAATTTCCAGGGTAGAGAAATATCAATGACAGCGGAGAATTTAGAAATTATGTTGGGTTTGTTTTTGGAAGAAAATAAGAGAAGAGAAAAATTGAGAGAAACTTATGGAGGCGAAAAAGAAAGTAGGGGAGGAAGAAAAAGGAAAAAGAAAGGAAATAGAGGAGATAAGCAAGGGGGAAGAACAAGCAAGTTCTGA

mRNA sequence

ATGGCCGGAGAGAAAGCAGTTGAGAAATCTGAGAAGAGTGAACTGGAAGTGGTCCGCTCAGACGGTCGTATGTCGGAGCAAGCCCAACCCAGTTTCGTCCAAACCCTACCCAGTTCAAGTGATATTTTTGGTGCAGAGGGCTTCAATCCCTTCAATTTCCAGGGTAGAGAAATATCAATGACAGCGGAGAATTTAGAAATTATGTTGGGTTTGTTTTTGGAAGAAAATAAGAGAAGAGAAAAATTGAGAGAAACTTATGGAGGCGAAAAAGAAAGTAGGGGAGGAAGAAAAAGGAAAAAGAAAGGAAATAGAGGAGATAAGCAAGGGGGAAGAACAAGCAAGTTCTGA

Coding sequence (CDS)

ATGGCCGGAGAGAAAGCAGTTGAGAAATCTGAGAAGAGTGAACTGGAAGTGGTCCGCTCAGACGGTCGTATGTCGGAGCAAGCCCAACCCAGTTTCGTCCAAACCCTACCCAGTTCAAGTGATATTTTTGGTGCAGAGGGCTTCAATCCCTTCAATTTCCAGGGTAGAGAAATATCAATGACAGCGGAGAATTTAGAAATTATGTTGGGTTTGTTTTTGGAAGAAAATAAGAGAAGAGAAAAATTGAGAGAAACTTATGGAGGCGAAAAAGAAAGTAGGGGAGGAAGAAAAAGGAAAAAGAAAGGAAATAGAGGAGATAAGCAAGGGGGAAGAACAAGCAAGTTCTGA

Protein sequence

MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDKQGGRTSKF*
Homology
BLAST of CsaV3_3G020930 vs. NCBI nr
Match: KGN57782.1 (hypothetical protein Csa_010186 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 6.1e-52
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query: 1   MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM 60
           MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM
Sbjct: 1   MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM 60

Query: 61  TAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDKQGGRTSKF 116
           TAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDKQGGRTSKF
Sbjct: 61  TAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDKQGGRTSKF 115

BLAST of CsaV3_3G020930 vs. NCBI nr
Match: KGN58057.2 (hypothetical protein Csa_011332 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 0

Query: 1   MAGEKAVEKSEKSELEVVRS----DGRMSEQAQPSFV-----QTLPSSSDIFGAEGFNPF 60
           M  EK+ ++S K E+  + S    DG +SEQAQ + +      TL  SS+IFG EGFN F
Sbjct: 1   MVEEKSSKQSNKQEVRNMGSSSERDGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSF 60

Query: 61  NFQGREISMTAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKK 102
           NF GREI +T +++E+MLGLFLEEN+RRE+L E    EK  +   K+ +K
Sbjct: 61  NFNGREIPITTDDIEVMLGLFLEENQRRERLMEE--AEKRQKEDDKKARK 108

BLAST of CsaV3_3G020930 vs. NCBI nr
Match: TYK11051.1 (hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-07
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0

Query: 1  MAGEKAVEKSEKSE-----------LEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAE 60
          M  +KA E+SEK E           +++VRSDG +SEQ Q    S  + LPSSS +FG E
Sbjct: 1  MIEKKASEQSEKKEASNTADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTE 60

Query: 61 GFNPFNFQGREISMTAENLEIMLGLFL 74
          G+NPFNF+G+ I M  +N+ +ML L L
Sbjct: 61 GWNPFNFKGKVIPMIDDNIAMMLKLLL 87

BLAST of CsaV3_3G020930 vs. NCBI nr
Match: KAA0062631.1 (hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-06
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 12  KSELEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIM 71
           K + EVV S G +SEQAQ    S  + LPSS ++FG +G+NPF+F+ +E+ MT EN++ +
Sbjct: 49  KRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSKEVLMTNENIDFI 108

Query: 72  LGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDK 108
             L +EE+ +R + +E    +++    + RK+K    ++
Sbjct: 109 TNLLMEESNKRAETKEEVEKKRKEDEEKARKEKAEEEER 147

BLAST of CsaV3_3G020930 vs. ExPASy TrEMBL
Match: A0A0A0LAT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.0e-52
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0

Query: 1   MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM 60
           MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM
Sbjct: 1   MAGEKAVEKSEKSELEVVRSDGRMSEQAQPSFVQTLPSSSDIFGAEGFNPFNFQGREISM 60

Query: 61  TAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDKQGGRTSKF 116
           TAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDKQGGRTSKF
Sbjct: 61  TAENLEIMLGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDKQGGRTSKF 115

BLAST of CsaV3_3G020930 vs. ExPASy TrEMBL
Match: A0A0A0LBL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G427420 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.8e-10
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 21  DGRMSEQAQPSFV-----QTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIMLGLFLEE 80
           DG +SEQAQ + +      TL  SS+IFG EGFN FNF GREI +T +++E+MLGLFLEE
Sbjct: 8   DGHVSEQAQVNPLPYNEGATLSCSSEIFGIEGFNSFNFNGREIPITTDDIEVMLGLFLEE 67

Query: 81  NKRREKLRETYGGEKESRGGRKRKKK 102
           N+RRE+L E    EK  +   K+ +K
Sbjct: 68  NQRRERLMEE--AEKRQKEDDKKARK 91

BLAST of CsaV3_3G020930 vs. ExPASy TrEMBL
Match: A0A5D3CGX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00340 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0

Query: 1  MAGEKAVEKSEKSE-----------LEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAE 60
          M  +KA E+SEK E           +++VRSDG +SEQ Q    S  + LPSSS +FG E
Sbjct: 1  MIEKKASEQSEKKEASNTADQFAMDIKIVRSDGPVSEQRQLGCTSHNKALPSSSSVFGTE 60

Query: 61 GFNPFNFQGREISMTAENLEIMLGLFL 74
          G+NPFNF+G+ I M  +N+ +ML L L
Sbjct: 61 GWNPFNFKGKVIPMIDDNIAMMLKLLL 87

BLAST of CsaV3_3G020930 vs. ExPASy TrEMBL
Match: A0A5A7VAE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001420 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.5e-06
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 12  KSELEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAEGFNPFNFQGREISMTAENLEIM 71
           K + EVV S G +SEQAQ    S  + LPSS ++FG +G+NPF+F+ +E+ MT EN++ +
Sbjct: 49  KRDTEVVHSHGPVSEQAQLASSSLNKALPSSREVFGTKGWNPFSFKSKEVLMTNENIDFI 108

Query: 72  LGLFLEENKRREKLRETYGGEKESRGGRKRKKKGNRGDK 108
             L +EE+ +R + +E    +++    + RK+K    ++
Sbjct: 109 TNLLMEESNKRAETKEEVEKKRKEDEEKARKEKAEEEER 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN57782.16.1e-52100.00hypothetical protein Csa_010186 [Cucumis sativus][more]
KGN58057.21.5e-1047.27hypothetical protein Csa_011332 [Cucumis sativus][more]
TYK11051.14.6e-0745.98hypothetical protein E5676_scaffold73G00340 [Cucumis melo var. makuwa][more]
KAA0062631.15.1e-0636.36hypothetical protein E6C27_scaffold79G001420 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LAT23.0e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1[more]
A0A0A0LBL24.8e-1052.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G427420 PE=4 SV=1[more]
A0A5D3CGX22.2e-0745.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VAE22.5e-0636.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020930.1CsaV3_3G020930.1mRNA